Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03309 and BL02736
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_03309___yprA.1.5803.seq
# -bsequence dna-align/BL02736___yprB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03309___yprA-BL02736___yprB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03309___yprA-BL02736___yprB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03309___yprA
# 2: BL02736___yprB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2421
# Identity: 1561/2421 (64.5%)
# Similarity: 1561/2421 (64.5%)
# Gaps: 324/2421 (13.4%)
# Score: 4602.0
#
#
#=======================================
BSNT_03309___ 1 ----ATGAAAAA-GAAATCACTGACTGAACTCAT-----TTCTGATTTAA 40
.|.||||| ||||| .||||.||..|.|| ||||||...||
BL02736___ypr 1 TTGTTTCAAAAACGAAAT--TTGACAGATATGATTCAGCTTCTGAAAGAA 48
BSNT_03309___ 41 AAGGAA---------ATGAAAACGTTGTGAATTGGCATGAAATTGAGCCT 81
.|..|| |.|.||| ||||..||||||||..|||.||
BL02736___ypr 49 GACCAAGCTTTCAGCAGGCAAA--TTGTTCATTGGCATACAATCGA---- 92
BSNT_03309___ 82 CGGGAAGCAAAAACAAG---------GC-CTATGCCCGAAAGTATAGACG 121
||| ||||.||| || .|.|.||.|||.||.||||..
BL02736___ypr 93 -GGG-----AAAAGAAGCGGATTACCGCGATTTTCCTGAAGGTTTAGATA 136
BSNT_03309___ 122 AGAGAATC-----------AAAGCGGCCCTTTCGAAAAGGGGCATTGATG 160
|||||||| |.||| ||||.||.||.||..
BL02736___ypr 137 AGAGAATCGTGCATGCTTTACAGC-----------AAAGAGGGATAGAAA 175
BSNT_03309___ 161 AACTATATACTCA-----CCAATATTCCGCTTTTCAATATG--------- 196
|.||.|||.|.|| ||.| |||.|||| ||
BL02736___ypr 176 AGCTGTATTCCCATCAGGCCGA-----CGCATTTC----TGCACAGCGCC 216
BSNT_03309___ 197 ---TGCAAAAAGGAGAAAGCATTGTTACCGTAACGCCAACAGCATCAGGA 243
.|||||||.|.| |.||.| ||.|||||.||.|||||.||.
BL02736___ypr 217 GCCGGCAAAAACGTG-ACGCTT-------GTGACGCCGACGGCATCTGGG 258
BSNT_03309___ 244 AAAACGTTATGCTACAACCTCCCAGTCCTGCAGTCCATC------GCCCA 287
||.|||.|.||||||||.||.||.|||.|.|||...||| |.|||
BL02736___ypr 259 AAGACGCTTTGCTACAATCTGCCCGTCATTCAGAGGATCACAGAAGACCA 308
BSNT_03309___ 288 AGATGAAACAAACCGGGC--GTTATATTTATTTCCGACTAAAGCGCTGGC 335
||||| ||.|| .|||||..|.|||||.||||||||..||.|
BL02736___ypr 309 AGATG--------CGCGCAGCTTATACCTTTTTCCTACTAAAGCATTGTC 350
BSNT_03309___ 336 ACAAGACCAAAAGAGCGAGCTAAATGAAATTATTGATGAAAT--GGGCAT 383
.||.||||||||.|||||.||.||||||.|.||.|||||||| |.||.|
BL02736___ypr 351 GCAGGACCAAAAAAGCGAACTGAATGAATTAATCGATGAAATCGGTGCGT 400
BSNT_03309___ 384 TGATATTAAAAGCTTTACATATGATGGGGATACGTCTCCGGCAATCAGAC 433
.| ||.||..|.|.|||||||||.||.||||||||.||..|.|||||.|
BL02736___ypr 401 CG--ATCAACTGTTATACATATGACGGAGATACGTCGCCTTCGATCAGGC 448
BSNT_03309___ 434 AAAAGGTGAGAAAAGCAGGTCATATTGTCATTACAAACCCCGATATGCTG 483
|.||.||.||||||||.||.|||||.||.||||||||.||.|||||||||
BL02736___ypr 449 AGAAAGTCAGAAAAGCGGGCCATATCGTGATTACAAATCCAGATATGCTG 498
BSNT_03309___ 484 CATTCTGCCATTCTACCGCATCATACGAAATGGGTCAGT--TTGTTTGAA 531
|||||.||.||..|.||.||.|||||.|||||||| || |||||||||
BL02736___ypr 499 CATTCGGCGATCTTGCCTCACCATACAAAATGGGT--GTCATTGTTTGAA 546
BSNT_03309___ 532 AACCTTAAGTATATCGTCATCGATGAGCTTCATACGTAT--CGAGGTGTG 579
||.||.||.||.||||||||||||||||||| |||||| .|.||.||.
BL02736___ypr 547 AATCTGAAATACATCGTCATCGATGAGCTTC--ACGTATACAGGGGAGTC 594
BSNT_03309___ 580 TTCGGCAGCCATGTGGCAAATGTGATCCGGCGGCTAAAGCGGATCTGCCG 629
||.|||||||||||.||.|||||.|||.|.|||||.|.|||||| |||.|
BL02736___ypr 595 TTTGGCAGCCATGTAGCCAATGTCATCAGACGGCTGATGCGGAT-TGCTG 643
BSNT_03309___ 630 -GTTTTATGGAAGTGATCCGGTTTTTATTTGTACTTCCGCAACAATTGCC 678
.|||||||||||..|.|||...|||||.|||||.|||||.||.||.|||
BL02736___ypr 644 AATTTTATGGAAGCAAGCCGCAGTTTATCTGTACATCCGCGACGATCGCC 693
BSNT_03309___ 679 AACCCAAAGGAATTGGGAGAGCAGCTGACAGGCAAACCGATGCGGCTG-- 726
||.|||..|||..|.|..|||..|||.||.||..|.|||||||..|||
BL02736___ypr 694 AATCCATTGGAGCTCGCTGAGACGCTCACGGGGCAGCCGATGCACCTGAT 743
BSNT_03309___ 727 GTCGATGACAACGGCGCACCGAGCGGACGCAAGCATTTTGTGTTTTACAA 776
.||.| ||||||||||.|||...|||.|.|||||.||..|.||||||||
BL02736___ypr 744 TTCAA--ACAACGGCGCCCCGTCGGGAAGAAAGCACTTCTTATTTTACAA 791
BSNT_03309___ 777 TCCGCCAATTGTGAACAAACCG----CTCAATATTAGAAGGAGCGCAACC 822
.|||||.||.|| .||||| ||.||.||.||||..|||||.|||
BL02736___ypr 792 CCCGCCGATGGT----CAACCGTTCCCTTAACATCAGAAAAAGCGCGACC 837
BSNT_03309___ 823 GCAGAAGTGAATGAA--CTGG----CGAAAGAGTTCCTTAAAAACAAAGT 866
...||||||| ||| ||.| |||| ||.||.||||||....|
BL02736___ypr 838 CTTGAAGTGA--GAAAGCTCGCATCCGAA----TTTCTAAAAAACGGCAT 881
BSNT_03309___ 867 GCAGACCATTGTTTTTGCCAGAAGCAGAGTTCGGGTGGAAATTATTTTAA 916
.|||||.|||||.|||||.||||||||||||||||||||||||||.||
BL02736___ypr 882 TCAGACGATTGTGTTTGCAAGAAGCAGAGTTCGGGTGGAAATTATATT-- 929
BSNT_03309___ 917 GCCATA--TTCAGGAGCTTGTGAAAAAAGAGATT---GGAACAAAATC-A 960
|.|||| |.||||| .||||..||...|||| ||..|..|.|| |
BL02736___ypr 930 GACATACTTGCAGGA---AGTGATGAAGCCGATTGTCGGCCCGCATTCGA 976
BSNT_03309___ 961 ATCAGAGGCTATCGGGGAGGCTATCTGCCGAAAGAGCGAAGAGAAATCGA 1010
.|||| ||.||..||||.||||||||||||||.|||||..|.|..||.||
BL02736___ypr 977 TTCAG-GGGTACAGGGGCGGCTATCTGCCGAACGAGCGGCGCGTCATTGA 1025
BSNT_03309___ 1011 AAGAGGCCTGAG-AGAAGGCGACATTTTAGGAGTGGTCAGTACGAATGCC 1059
||.||||||..| || .||.|||||...|||.||.|||||.||||||||.
BL02736___ypr 1026 AAAAGGCCTTCGCAG-CGGGGACATCAAAGGCGTTGTCAGCACGAATGCA 1074
BSNT_03309___ 1060 TTAGAGCTTGGTGTTGATATCGGCCAGCTGCAAGTGTGTGTAATGACTGG 1109
.|.||.||.||.|||||.|||||.||||||||....||..|.|||||.||
BL02736___ypr 1075 CTCGAACTGGGCGTTGACATCGGACAGCTGCAGACATGCATCATGACCGG 1124
BSNT_03309___ 1110 GTATCCCGGAAGTGTTGCAAGTGCTTGGCAGCAGGCCGGACGAGCCGGCA 1159
.|||||.||||...|..||||.||.||||||||||||||.||.|||||.|
BL02736___ypr 1125 TTATCCTGGAACGATCTCAAGCGCCTGGCAGCAGGCCGGCCGCGCCGGAA 1174
BSNT_03309___ 1160 GAAGACACGGTGAATCTTTGATTATTTTGGTAGCCAATTCAACACCGATT 1209
||||.|||...|||.|..|||||.|..||||.||.|.|||..|.|||.|.
BL02736___ypr 1175 GAAGGCACAACGAAGCGCTGATTGTCATGGTGGCAAGTTCCGCCCCGCTC 1224
BSNT_03309___ 1210 GACCAATATATTGTGCGGCATCCTGAATATTTCTTT------AATCGTTC 1253
||.||.||.||.||.|.|.||||.||.||||||||| ||||
BL02736___ypr 1225 GATCAGTACATCGTACAGAATCCGGACTATTTCTTTAAACAAAATC---- 1270
BSNT_03309___ 1254 GCCG-GAATCTGCAAGAATCAATCCGGAGAATTTGATTATTTTAGTAGAC 1302
||| || ||||....||.||.|||||.||..||.|.|||.|.||.||.
BL02736___ypr 1271 -CCGAGA--CTGCCGTCATTAACCCGGACAACCTGGTCATTCTCGTCGAT 1317
BSNT_03309___ 1303 CACTTAAAGTGTGCGGCTTATGAGCTTCCTTTTAGAGCTGATGAAGA--- 1349
||..|.||.||.|||||.|.|||.||.||.||.| .||||
BL02736___ypr 1318 CATATCAAATGCGCGGCCTTTGAACTGCCATTCA--------AAAGAACG 1359
BSNT_03309___ 1350 -----ATTTGGAGCCAT-GGAAGTCAGTGATATTCTTGAGTATCTT--CA 1391
|||.||.|..|| |.||.|.|| |||||||||||.|| ||| ||
BL02736___ypr 1360 GACACATTCGGCGGTATCGAAATTGAG-GATATTCTTGACTA-CTTGGCA 1407
BSNT_03309___ 1392 GGAAG--AGGCTGTTCTTCACCGCAACGGCGA--ACGGTACCATTGGGCA 1437
|||| ||| ||.||.|| |..|||.|.|| || ||||||.|||...
BL02736___ypr 1408 -GAAGAAAGG--GTCCTCCA-CTTAACCGGGAATAC-GTACCACTGGATG 1452
BSNT_03309___ 1438 AGTGAGTCGTTTCCTGCTTCA-AACATCAGTTTGCGTTCCGCCTCCCAGG 1486
|.|||..|.|||||.|| .|| ..||||||.||..|.||.||.||.||||
BL02736___ypr 1453 AATGACGCTTTTCCCGC-GCACGGCATCAGCTTAAGATCGGCTTCTCAGG 1501
BSNT_03309___ 1487 AAAATGTCGTTATAGTTGATCAGTC------GGATATTGCAAATGTAAGG 1530
|||||||.||.||..|||||||||| .||.|..||.||.|||
BL02736___ypr 1502 AAAATGTTGTGATTATTGATCAGTCAAGACGCGAGAAGGCGAAAGTA--- 1548
BSNT_03309___ 1531 ATTATCGGTGAAATGGACCGTTTTAGTGCGATGACGCTTTTACATGATGA 1580
|||||.|||||||||.|.||.||.||.|||||||||.|.||.|||||
BL02736___ypr 1549 ---ATCGGGGAAATGGACAGGTTCAGCGCCATGACGCTTCTTCACGATGA 1595
BSNT_03309___ 1581 AGCAATTTATTTGCATGAAGGCGTTCAGTATCAAGTTGAGAAGCTCGATT 1630
|||.||||||||||||.|||||.|.||.||.||.||.||.|||||.||.|
BL02736___ypr 1596 AGCCATTTATTTGCATCAAGGCATCCAATACCAGGTGGAAAAGCTTGACT 1645
BSNT_03309___ 1631 GGGACCATAAAAAGGCGTATGTCAGAAAAGTCGATGTCGAATATTATACG 1680
||||..|.||||||||||.||||.|..|.||..|.||.||.||.|||||.
BL02736___ypr 1646 GGGAGGAGAAAAAGGCGTTTGTCCGCGAGGTTCAAGTTGATTACTATACC 1695
BSNT_03309___ 1681 GATGCAAACCTGGCAGTTCAGCTGAAGGTATTAGAAATCGATAA----AA 1726
|||||.||.||.||.||...|||||..||..|.||..|.||.|| ||
BL02736___ypr 1696 GATGCCAATCTTGCCGTCTTGCTGAGAGTTCTCGAGGTTGACAAGGAGAA 1745
BSNT_03309___ 1727 CGAAAGA---AAAAAGC--CGTACGTCATTGCACTACGGAGACGTCACTG 1771
||||| |||..|| |||.||...|| ||.||.||.||.|
BL02736___ypr 1746 --AAAGACGGAAACCGCAGCGTTCGGTTTT-------GGGGATGTGACCG 1786
BSNT_03309___ 1772 TCAATGCCCTGCCGACCATTTTTAAAAAAATAAAAAT---GAC-CACTTT 1817
|..|.||.....||||.||||||||.|||||||||.| ||| ||
BL02736___ypr 1787 TTCAGGCAAAAGCGACGATTTTTAAGAAAATAAAATTTGAGACGCA---- 1832
BSNT_03309___ 1818 TGAAAATATTGGGTCTGGACCTATTCATTTGCCGGAAGAAGAACTGCATA 1867
|||||||||.||.||.|||||.||||||.||||.|||||.||.|||||||
BL02736___ypr 1833 TGAAAATATCGGTTCAGGACCGATTCATCTGCCTGAAGAGGAGCTGCATA 1882
BSNT_03309___ 1868 CAAGTGCAGCTTGGCT---------CGAAA-------TCAAAACAGCGGA 1901
|.|.|||.||||||.| |||.| .|||||..|
BL02736___ypr 1883 CCAATGCGGCTTGGGTGCAGGTGAACGATAGTGAGCGGCAAAATTG---- 1928
BSNT_03309___ 1902 TGAA-GACATCGGGGAAAAGACACTGGAACAGCTGCTT--CTTGGCATCT 1948
||| |||||| |.|.|||||.|| |||| |||||.| ||
BL02736___ypr 1929 -GAATGACATC---------AAATTGGAAGAG--GCTTTGCTTGGGA-CT 1965
BSNT_03309___ 1949 -CGAATGTGCTGCAGCATATTGTC-CCTGTGTATA--TCATGTGTGATCG 1994
|.||.||.||...||||.|.|.| ||| ||.| |.|||||.||||.
BL02736___ypr 1966 GCAAACGTTCTTGGGCATGTAGCCGCCT---TAAAAGTGATGTGCGATCC 2012
BSNT_03309___ 1995 AAATGATGTTCATGTTGTTTCTCAAATTAAAGCAGCCCATACCGGATTGC 2044
|..||||.|.||||||.||.|.|||||.|||||.|..||||.||.|..||
BL02736___ypr 2013 ATCTGATCTGCATGTTTTTCCGCAAATCAAAGCCGTTCATAACGAAAAGC 2062
BSNT_03309___ 2045 CAACCATATTTTTATATGATCATTATCCGGGCGGTATCGGTTTGGCGGAG 2094
|.||.||.|||||.|||||||..|||||.|||||..|.|||.|..|..|.
BL02736___ypr 2063 CGACGATCTTTTTGTATGATCGCTATCCCGGCGGAGTGGGTCTTTCACAA 2112
BSNT_03309___ 2095 GAAGTCTTTAAACGTTTTTCAGA---CATTAATGAAGCGGCGAAACAACT 2141
.||||.|.|.|||...|..|.|| |||.|.|||| |||.|.|..||
BL02736___ypr 2113 AAAGTGTATGAACAAATGCCCGAGATCATCAGTGAA---GCGCATCGGCT 2159
BSNT_03309___ 2142 GATTACACATTGTCCTTGTCATGAC-GGCTGTCCGTCTTGTATAGGTACA 2190
||||.||...|||||.|||.| |.| ||.||.||.||.||.||||| |
BL02736___ypr 2160 GATTTCAAGATGTCCGTGTGA-GTCAGGATGCCCTTCCTGCATAGG---A 2205
BSNT_03309___ 2191 GAAATAGAAGG-GATAAAAGCAAAGGAAAGAAT--TTTGCAGCTGTTGGA 2237
|..|..|..|| |||.|.| |||| |||.||| |.|||..||.||
BL02736___ypr 2206 GTGAGCGGCGGCGATCAGA-CAAA--AAACAATGCTCTGCGCCTTTT--- 2249
BSNT_03309___ 2238 TCAAATGTC-GTAA------- 2250
|||.|.| |.||
BL02736___ypr 2250 --AAAAGGCTGGAAAGGTTGA 2268
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