Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00319 and BL02717
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:59
# Commandline: needle
# -asequence dna-align/BSNT_00319___ybbE.1.5803.seq
# -bsequence dna-align/BL02717___ybbE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00319___ybbE-BL02717___ybbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00319___ybbE-BL02717___ybbE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00319___ybbE
# 2: BL02717___ybbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1454
# Identity: 903/1454 (62.1%)
# Similarity: 903/1454 (62.1%)
# Gaps: 235/1454 (16.2%)
# Score: 2681.0
#
#
#=======================================
BSNT_00319___ 1 GTGAAAACAAAGACACTGTTCATATTCAGTGC-----CATTTTAACCCTA 45
||..||||||| |.| |||||
BL02717___ybb 1 ---------------------ATGATCAGTGCGGCCGCGT-----CCCTA 24
BSNT_00319___ 46 TCGATATTCGCGCCAAATGAAA---------------CCTTC----GCAC 76
|.|.| || |||.| ||.|| ||||
BL02717___ybb 25 TTGCT------GC----TGACATGCTTTTTTCCGCTTCCGTCCACAGCAC 64
BSNT_00319___ 77 AAACAGC-----------AGACAA-----------------CTTGGTTGA 98
|.||.|| |||||| |.||.||.|
BL02717___ybb 65 AGACTGCCATCGGGAACGAGACAAAACAGCGGCTGACATATCCTGTTTTA 114
BSNT_00319___ 99 GCCGAAAACCATAAATGCAGAAACTGCACAA------TTCTCGACGAAGA 142
.|||||.|.| |||.|| |||.|.|| ||.||..||||.|
BL02717___ybb 115 -ACGAAAGCGA-AAACGC-----CTGAAGAAGCCGGTTTTTCTTCGAAAA 157
BSNT_00319___ 143 AGCTAAAGAAG--GTAGATCAGATGATAGAACGGGATATTGCAGCAGGAT 190
||||.| ||| ||.||.|...||||.||||.||||.|...|||.||.|
BL02717___ybb 158 AGCTTA--AAGCTGTGGACCGTCTGATCGAACAGGATGTCAAAGCGGGCT 205
BSNT_00319___ 191 TTCCAGGCGCCGTTCTTGTGGTGGTGAAGGATGGACGCATCATAAAAAAA 240
||||.|||||.|..|||.|..||.|.||.||.|||...|||||.||||||
BL02717___ybb 206 TTCCCGGCGCTGCCCTTATTTTGATTAAAGACGGAAAAATCATCAAAAAA 255
BSNT_00319___ 241 GAAGCATACGGCTAC-AGTAAAAAGTACGAAGGG--TCAGAACTGCTGCG 287
||||..||||||||| ||.|.||| ||| ||.|| |||.| |||
BL02717___ybb 256 GAAGTCTACGGCTACAAGCAGAAA-TAC-AACGGCCTCATA------GCG 297
BSNT_00319___ 288 C-----CGTCCGGCCAAAATGAAAACCCGCACGATGTTTGACTTAGCCTC 332
| |.|||....|||||||||.|...|||||||||.|||.|||||||
BL02717___ybb 298 CTCAAACATCCAAAAAAAATGAAAGCAAACACGATGTTCGACCTAGCCTC 347
BSNT_00319___ 333 AAATACAAAAATGTACGCAACAAATTTTGTATTGCAGCGCTTAGTCAGCC 382
.||||||||||||||.||....|||||||..|||||||..|||||.|||.
BL02717___ybb 348 CAATACAAAAATGTATGCCGTCAATTTTGCCTTGCAGCATTTAGTGAGCA 397
BSNT_00319___ 383 AAGGAAAACTTGACGTCTATGAAAAAGTTTCTGCATATTTGCCGGGTTTC 432
..|||||.||||||.|..|..||||..|||||..||||.|.||.|.||||
BL02717___ybb 398 CCGGAAAGCTTGACTTGAACAAAAACATTTCTCAATATCTCCCTGATTTC 447
BSNT_00319___ 433 AAGGATCAGCCGGGTGACCTCATAAAAGGAAAAGACAAGATACGTGTCAT 482
||.|||||.||||..|||....||||.||||||.||..|.|.||.||.||
BL02717___ybb 448 AAAGATCACCCGGAAGACGATGTAAAGGGAAAAAACCGGCTCCGCGTGAT 497
BSNT_00319___ 483 TGATGTCCTCCAGCACCAATCAGGGCTCCCATCAAGCTTTTACTTTTAC- 531
||||.|.||.||.||..|..||||..||||..||||||...|.|.||||
BL02717___ybb 498 TGATTTGCTTCATCATAACGCAGGCTTCCCTGCAAGCTGGAATTATTACG 547
BSNT_00319___ 532 ACGCCGGAAAAAGCCGG-CAAGTACTATTCCCAAGAACGGGACAAAACGA 580
|| |||.||..|||||| ||..| |||.||.|||..||||..|||||||.
BL02717___ybb 548 AC-CCGAAATCAGCCGGACACCT-CTACTCTCAATCACGGAGCAAAACGC 595
BSNT_00319___ 581 TTGAATAT-TTGACGAAAATTCCGCTCGATTATCAAACCGGGACAAAACA 629
|||||||| ||| .|||||..||..|.|..|||.||.||||.|||||.||
BL02717___ybb 596 TTGAATATCTTG-TGAAAACCCCCTTGGCATATGAACCCGGCACAAAGCA 644
BSNT_00319___ 630 CGTATACAGTGACATTGGATATATGCTACTTGGG-TGTATTGTCGAAAAA 678
..|.|||||||||||.|..||||||||.||.||| || ||..|.||||||
BL02717___ybb 645 AATTTACAGTGACATCGACTATATGCTCCTCGGGCTG-ATCATTGAAAAA 693
BSNT_00319___ 679 CTCACTGGCAAAC---CGCTT-GATGTCT-------ACACGGAGCAAGAG 717
.||| ||||| ||.|| |||..|| |.||.| |
BL02717___ybb 694 ATCA----CAAACGAGCGTTTAGATACCTTTGTTGAAAACCG-------G 732
BSNT_00319___ 718 CTCTACAAACCGCTCAGGCTGAAGCATACCTTGTACAATCCGCTGCAAAA 767
.|.|||...||.|||.|..||..||||||.||||..||||||||.|||||
BL02717___ybb 733 TTTTACCGGCCTCTCGGATTGCGGCATACTTTGTTTAATCCGCTCCAAAA 782
BSNT_00319___ 768 GGGCTTTAAACCGAAACAGTTCGCAGCTACTGAACGAATGGGCAATACAC 817
|||||||||||.|...||.||.||||||||.||||||.||||.||.||..
BL02717___ybb 783 GGGCTTTAAACGGTCGCATTTTGCAGCTACGGAACGATTGGGAAACACCA 832
BSNT_00319___ 818 GTGACGGCGTTATTCAATTCCCTAACATCCGCACAAACACGCTGCAAGGA 867
|.||||||...|||...|||||.||||||.|.||..||||.||.||.||.
BL02717___ybb 833 GAGACGGCACCATTTCGTTCCCAAACATCAGAACTTACACACTTCAGGGG 882
BSNT_00319___ 868 GAGGTGCATGACGAAAAAGCGTTTTACTCAATGGATGGCGTGTCTGGGCA 917
||.||.||.||.||||||||.||.||.||||||||.|||||.||||||||
BL02717___ybb 883 GAAGTCCACGATGAAAAAGCATTCTATTCAATGGAAGGCGTTTCTGGGCA 932
BSNT_00319___ 918 TGCCGGATTGTTCTCAA---------ATGCAGATGATATGGCCA-TACTG 957
||||||..||||.||.| |.|||| || |.||.
BL02717___ybb 933 TGCCGGCCTGTTTTCCACCGTTGACGACGCAG----------CAGTGCTC 972
BSNT_00319___ 958 CTGCAAGTCATGTTAAACAAAGGTTCATACCGA---------------AA 992
||.|||||||||.|.|||...||....|||.|| |.
BL02717___ybb 973 CTTCAAGTCATGCTGAACGGCGGCGGTTACGGAAGACAGCATCTATTCAG 1022
BSNT_00319___ 993 CATTTCT-TTATTTGATCAGAAAACAGCCGACCTGTTTACAGCACCTTCA 1041
||.|||| |.||| |||.|| |||||||..||.|||
BL02717___ybb 1023 CAGTTCTGTCATT---TCACAA-------------TTTACAGAGCCGTCA 1056
BSNT_00319___ 1042 GCAACAGACCCGACATTCGCTCTTGGCTGGAGGCGGAACGGAAGTAAAAG 1091
..||||.|.||.||||..|..||.||.|||.|||..|||||.|.||
BL02717___ybb 1057 AAAACAAATCCCACATATGGACTAGGATGGCGGCTCAACGGCAATA---- 1102
BSNT_00319___ 1092 C----ATGGAATGGATGTTTGGCCCTCATGCCAG-TGAAAATGCTTACGG 1136
| |||||.||||||||.|||...||.||||| .|.||| ||.||.||
BL02717___ybb 1103 CCGATATGGAGTGGATGTTCGGCAAGCACGCCAGCAGCAAA-GCATATGG 1151
BSNT_00319___ 1137 GCATACCGGCTGGACAGGGACAGTTACAATTATTGATCCAGCATA-CAAT 1185
.||||||||||||||.||.||.|||||.||.||||||||.|..|| |||
BL02717___ybb 1152 CCATACCGGCTGGACGGGAACGGTTACTATCATTGATCCCGTGTATCAA- 1200
BSNT_00319___ 1186 TTAGGCATCGCATTGTTAACAAATAAAAAGCATACACCAGTTATTGATCC 1235
.|.|||||.|..||||||||.|||||||||||..|.||.|||||..|.||
BL02717___ybb 1201 ATCGGCATTGTGTTGTTAACCAATAAAAAGCACTCTCCTGTTATCAACCC 1250
BSNT_00319___ 1236 GGAAGAAAATCCAAACGTC--TTTGAGGGTGATCAATTTGCAACAGGCAG 1283
..|||||||.||.|| || ||.||.||||||.||||||||||.||.|.
BL02717___ybb 1251 TAAAGAAAACCCGAA--TCAATTCGAAGGTGATGAATTTGCAACCGGAAA 1298
BSNT_00319___ 1284 TTATGGAAGTGTCATAACCGCGATTTATGAAGCG-----------ATGGA 1322
.||.||.||.|||||.||.||..||||.||.||| ||.|
BL02717___ybb 1299 GTACGGCAGCGTCATTACAGCTGTTTACGAGGCGTTACATCACCAATAG- 1347
BSNT_00319___ 1323 GTGA 1326
BL02717___ybb 1347 ---- 1347
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