Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00345 and BL02702
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:00
# Commandline: needle
# -asequence dna-align/BSNT_00345___ybbR.1.5803.seq
# -bsequence dna-align/BL02702___ybbR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00345___ybbR-BL02702___ybbR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00345___ybbR-BL02702___ybbR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00345___ybbR
# 2: BL02702___ybbR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1517
# Identity: 930/1517 (61.3%)
# Similarity: 930/1517 (61.3%)
# Gaps: 262/1517 (17.3%)
# Score: 2774.5
#
#
#=======================================
BSNT_00345___ 1 ATGGATAAATTCTTAAACTACCGCTGGGCTGTGAAAATCATTGCTCTGCT 50
||||||||.|||||||||.|.|.|||||||||.|||.|..|.||..|..|
BL02702___ybb 1 ATGGATAAGTTCTTAAACAATCCCTGGGCTGTCAAAGTTGTCGCGTTATT 50
BSNT_00345___ 51 TTTCGCG-CTCTTGCTTTATGTGGCGGTTAACAGCAACCAAGCACCGACT 99
.|||||| .|||| |||||..|.|||||..|||||...||.||.||||||
BL02702___ybb 51 GTTCGCGTTTCTT-CTTTACTTTGCGGTCCACAGCGCTCAGGCGCCGACT 99
BSNT_00345___ 100 CCGAAAAAACCGGGTGAATCTTTCTTTCCGACATCAACAACTGATGAAGC 149
|||||.|||||.||||||||.||.||.||||||||.|||||.||.|||||
BL02702___ybb 100 CCGAAGAAACCAGGTGAATCGTTTTTCCCGACATCGACAACAGACGAAGC 149
BSNT_00345___ 150 AACTCTGACTGATATTCCGGTTAAAGCGTATTATGATGATGAAAATTACG 199
.||.||.||.|||||.|||||.|||.|||.|||||||||||||||.||||
BL02702___ybb 150 GACGCTCACCGATATACCGGTCAAATCGTTTTATGATGATGAAAACTACG 199
BSNT_00345___ 200 TCGTAACGGGTGTTCCGCAAACGGTTAATGTCACGATAAAAGGCTCGACA 249
|||||||.||.||.|||||.|||||.|||||||||||.||||||.||||.
BL02702___ybb 200 TCGTAACAGGCGTGCCGCAGACGGTGAATGTCACGATTAAAGGCCCGACC 249
BSNT_00345___ 250 AGCGCCGTGAAAAAGGCTCGGCAGACCAA---AA--ACTTTGAAATATAT 294
.|..||||.||.||| |.|||| ||| || |.|||||.||.|||
BL02702___ybb 250 GGAACCGTCAAGAAG----GTCAGA-CAAGTGAAGGATTTTGAGATTTAT 294
BSNT_00345___ 295 GCTGATATGGAACATTTGAAAACCGGCACACATAAGGTTGAGCTTAAGGC 344
||.||.|||.||.|..|||||||.||||..|||||.||.|||||.|||||
BL02702___ybb 295 GCCGACATGCAAAACCTGAAAACAGGCAGGCATAAAGTCGAGCTGAAGGC 344
BSNT_00345___ 345 CAAAAACGTGTCGGATGGGATGACAATCT--CAATTAATCCGTCTGTTAC 392
||.|||.||..|.||.||..| ||.||| |.||.|||||.||.||.||
BL02702___ybb 345 CAGAAATGTTGCCGACGGCCT--CACTCTGACCATCAATCCATCGGTGAC 392
BSNT_00345___ 393 GACAGTGACCATTCAGGAACGGACGACCAA--AAGTTTTCCC-GTAGAAG 439
.||.|||||.||..|.|||...|||||.|| || ||||| ||.||.|
BL02702___ybb 393 AACCGTGACGATCGAAGAAAAAACGACGAAGGAA---TTCCCGGTCGAGG 439
BSNT_00345___ 440 TGGAGTACTACAACAAAAGCAAGATGAAAAAAGGCTATTCTCCGGAGCAG 489
|.||.|..||.||.||||.|||.||||||.|.|||||..|.|||||||.|
BL02702___ybb 440 TTGATTTTTATAATAAAAACAAAATGAAAGACGGCTACACGCCGGAGCTG 489
BSNT_00345___ 490 CCGATTGTCAGTCCGAAAAATGTGCAG-ATTACCGGATCGAAAAATGTCA 538
|||||..|||..||||||||.|| ||| .|.|||||.||.|||...||.|
BL02702___ybb 490 CCGATCATCAACCCGAAAAACGT-CAGCGTCACCGGCTCAAAAGCCGTGA 538
BSNT_00345___ 539 TCGATAATATTTCTCTTG----TAAAAGCTTCAGTGAATTTGGAAAACGC 584
||||.|..| ||..| |.||.||..|..|.|||||.||...||.
BL02702___ybb 539 TCGACAGAA----TCCAGAACATCAAGGCGACGATCAATTTAGAGGGCGT 584
BSNT_00345___ 585 AGATGAAACGATTGAAAAGGAAGCGAAAGTGACTGTCTATGATAAAGACG 634
.||..|.|||.|||||||.|||||.||..|.||.||.||.||.||.||||
BL02702___ybb 585 CGACCAGACGGTTGAAAAAGAAGCCAAGCTTACAGTATACGACAAGGACG 634
BSNT_00345___ 635 GAAACGCGCTTCCTGTCGACGTGGAGCCC-TCGGTCATCAAGATTACCGT 683
||||.|..||.||.||.||.|| .||||| ||.|||.|.||.||.|||||
BL02702___ybb 635 GAAATGTCCTGCCGGTTGAAGT-CAGCCCTTCCGTCGTTAAAATCACCGT 683
BSNT_00345___ 684 TCCGGTGACAAGTCCGAGTAAAAAAGTGCCCTTTAAAATTGAACGGACAG 733
|||||||||.||.|||||.|||||..|.||..|.|||.||||.||||.||
BL02702___ybb 684 TCCGGTGACGAGCCCGAGCAAAAAGATTCCGGTCAAAGTTGACCGGAAAG 733
BSNT_00345___ 734 GAAGCCTTCCTGACGGTGTCAGCATAGCGAATATTGAATCCAGCCCC--- 780
|.||||||||.|||||..||||||| .|||||||.|
BL02702___ybb 734 GCAGCCTTCCGGACGGCATCAGCAT------------TTCCAGCCTCGAT 771
BSNT_00345___ 781 ---AGT------GAAGTAACGGTTTACGGCTCACAGGATGTGTTGGATTC 821
||| ||.||.||.||.|||||..|.||..||||..|.|||||
BL02702___ybb 772 ATAAGTCCGGGAGAGGTGACCGTCTACGGGCCGCAAAATGTTCTTGATTC 821
BSNT_00345___ 822 TCTTGAATTTATTGACGGCGTC-AGCCTAGATTTAAGTAAAATTAACAAG 870
..|.||||||.|.||.|.||.| || .|.||||||||||||||.||..|.
BL02702___ybb 822 GTTAGAATTTGTCGAGGCCGACGAG-ATTGATTTAAGTAAAATAAAGGAT 870
BSNT_00345___ 871 GATTCCGATATCGAGGCAGATATTCTGCTTCCTGACGGTGTCAAAAAAAT 920
|||.|.||..|.||.||.|..|||....|.||.|||||.|..|||||..|
BL02702___ybb 871 GATACTGAATTGGAAGCCGGCATTAAAGTGCCGGACGGCGCTAAAAAGGT 920
BSNT_00345___ 921 CTCACCGTCAAAGGTGACTTTGCATAT--AG----AAGTCGATAGTGAAG 964
.|||||...|||.|||| |.|| || ||||.||.|..||||
BL02702___ybb 921 GTCACCCGAAAAAGTGA------AAATCAAGGTGAAAGTTGACAAGGAAG 964
BSNT_00345___ 965 CGGATCAGAAGTTCGAGAATGTCCCTATCAAGACTGTAGGGCTGA---GC 1011
..||..|.||..|..|.||.||..|.||.||.||.|..||||||| .|
BL02702___ybb 965 AAGAGAAAAAACTGAAAAACGTTTCAATTAAAACCGCGGGGCTGAATGAC 1014
BSNT_00345___ 1012 AGC-----TCACAAAACATTGAATATCTTGATCCTGAA-TCA--CAAGC- 1052
||| || ||||||.|||.||||| ||| ||| |||||
BL02702___ybb 1015 AGCCGGGATC--------TTGAATTTCTCGATCC-GAAGTCAGGCAAGCT 1055
BSNT_00345___ 1053 -GATAGACGTAACGGCTAAAGGCT---CTCCCGCGAATATAAAAAAACTG 1098
|||| |.|||||.||.|||| |..||||| ||..|||||||.
BL02702___ybb 1056 GGATA----TCACGGCAAAGGGCTCGACAGCCGCG---ATCGAAAAACTC 1098
BSNT_00345___ 1099 AAAAAATCAGATATTGAATTGTATGTGAATGTTTCAGATTTAGAGGACGG 1148
.|....||.||..|.||..|.|||||.|||||..|.|||.|.||.|||||
BL02702___ybb 1099 CAGCCTTCCGACGTCGAGCTCTATGTCAATGTGGCGGATCTCGATGACGG 1148
BSNT_00345___ 1149 GGAGCATAGCGTGAAGCTTGAAGTGAACGGGCCACAGAATGTAACCTGGT 1198
.|||||.|..||.|||||.|||||.|||||.||.|||||..|.||.||||
BL02702___ybb 1149 CGAGCACAATGTAAAGCTGGAAGTAAACGGTCCGCAGAACATGACATGGT 1198
BSNT_00345___ 1199 CCTTGGGGCGGAAAAACGCCAAAATCAAGCTGACGTCTAAGAAAAGCAAT 1248
|..||..||| |.||||||.|
BL02702___ybb 1199 CGCTGCCGCG------------------------------GCAAAGCATT 1218
BSNT_00345___ 1249 ACATCAACGAATGATAACAGCAGCAATACATCAGGGAACCAGGATGACAC 1298
|||.||| |.|||
BL02702___ybb 1219 -------CGAGTGA-------------AAATC------------------ 1230
BSNT_00345___ 1299 AGATAAACAAACAAATGATCAAAAGAACAATCAGCAAGAAGATACAAAGA 1348
|.||| |||
BL02702___ybb 1231 ---------------TCATC----------TCA----------------- 1238
BSNT_00345___ 1349 ACACTGATAAAAACAACAACGATCAAAACCAAGACGAAAATAAAGATCAA 1398
|||||| ||||.|||||| ||
BL02702___ybb 1239 --------------AACAAC--------CCAAAACGAAA---------AA 1257
BSNT_00345___ 1399 AACCAAGATCAGGATGAGGA-----TGAATCCACTGCGA-----ATTCAC 1438
|||.|.|.|||||||||.|| .|||| ||.|..|| ||||||
BL02702___ybb 1258 AACAATGGTCAGGATGAAGAAGAAGAGAAT-CATTCTGAAAAGGATTCAC 1306
BSNT_00345___ 1439 AATCCTCATCGGAATAA 1455
||.|.|||| ||
BL02702___ybb 1307 AACCTTCAT--GA---- 1317
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