Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01959 and BL02678
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_01959___yjbX.1.5803.seq
# -bsequence dna-align/BL02678___cotO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01959___yjbX-BL02678___cotO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01959___yjbX-BL02678___cotO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01959___yjbX
# 2: BL02678___cotO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 715
# Identity: 358/715 (50.1%)
# Similarity: 358/715 (50.1%)
# Gaps: 272/715 (38.0%)
# Score: 1010.0
#
#
#=======================================
BSNT_01959___ 1 ATGTCTAATAAGAAAAGA-AACGCGGATAAAAAACCGCTCATGTATATTG 49
|||||| |..||||||.| .|.|||||..||||.||||||||||||||||
BL02678___cot 1 ATGTCT-AGCAGAAAACACGATGCGGAGCAAAAGCCGCTCATGTATATTG 49
BSNT_01959___ 50 TTCAGCCGGATTAT------GCAGA----AACTACAAGGTCATCCATGCA 89
|.||||||||.||| ||||| || ||||||
BL02678___cot 50 TGCAGCCGGACTATGATAAGGCAGAGGCGAA-------------CATGCA 86
BSNT_01959___ 90 GGAGATTGTCATCAAAAGAAAGGCCGACAAACCCGCTCCGCCAAAAGCTG 139
|||.|||.|.||.||||||||| |||
BL02678___cot 87 GGATATTCTGATTAAAAGAAAG----------------------AAG--- 111
BSNT_01959___ 140 AGGAAAAGCCGGCTTACCATGAGAAGGAGCAGGAGGAAGCTGTGGCACAG 189
|||||
BL02678___cot 112 ----AAAGC----------------------------------------- 116
BSNT_01959___ 190 GATGTCCTGCAAGAAGACCAAAAGCCTGCAG---CCGAACCAGTGAGTCA 236
||||||.|.|| ||||||
BL02678___cot 117 --------------------AAAGCCCGAAGCTTCCGAAC---------- 136
BSNT_01959___ 237 GCAAATACAAGAGGTGAGAGAGCCAGAGAACATAAAAAGCCAGGAGGAAC 286
|||||||..||.|||
BL02678___cot 137 ---------------------------------AAAAAGCGCGGCGGA-- 151
BSNT_01959___ 287 AGAAACAAGAGCCGCAGGCCGTAGAAGAAACCGTTGAACACGAGCCCCCA 336
||.|||| |||| ||.|||.||||
BL02678___cot 152 AGGAACA------GCAG------GATGAAGCCGT---------------- 173
BSNT_01959___ 337 AAAGCAGAAAAAAAGGAAGAGCCTGCACTTGAGGCCCG--GAAGCCTGAG 384
|| |||||| |||
BL02678___cot 174 ---------------------CC---------GGCCCGACGAA------- 186
BSNT_01959___ 385 AAAGAACCGGAAGCTGTCCATA----GTGCT----GATAAAGCGGA---- 422
||||| ||| ||||| | |||.| |||.|.|||.|
BL02678___cot 187 AAAGA--CGG-AGCTG-----AAGCGGTGTTTAACGATGAGGCGAATCGA 228
BSNT_01959___ 423 --GGAAAAAGCACCGCCGGCA---CGAAAAGTGAAAAAACCGATGAGCAA 467
.|||||||.| |.|| ||| |.|||||.|||.|.|||||
BL02678___cot 229 TCCGAAAAAGGA-----GTCAAACCGA----TTAAAAAGCCGCTCAGCAA 269
BSNT_01959___ 468 GATGACGATCCACGAAAAAATTGATTTTTTAACAAAGCTGCCTCATAACA 517
|||||||||...|||.|||||.||.|||||..|||..||.||....||.|
BL02678___cot 270 GATGACGATTGCCGAGAAAATCGACTTTTTGGCAAGCCTTCCCGGCAATA 319
BSNT_01959___ 518 TGCCGAGAGCGCTTTGTTTGATTGAAGC-CAATGGAAGAACGTACAGGGG 566
||||||.|.|.||||||.|.|||||||| .|..||||| ||.||||||||
BL02678___cot 320 TGCCGAAAACCCTTTGTCTCATTGAAGCAGACGGGAAG-ACATACAGGGG 368
BSNT_01959___ 567 CGTGATTGTCGGAAGAAGAA--ATGATTCCGTCCTGCTTCGAACAACCGG 614
...|||.|||||| ||||| ..|||||||||.|..|..||||..|..|
BL02678___cot 369 AACGATCGTCGGA--AAGAAGGGCGATTCCGTCTTTGTCAGAACGTCGAG 416
BSNT_01959___ 615 AAACGGAGCCCCAACCGAACTGGCAATCGATGA-TATTACCTCTTTGCAC 663
.||.||.||.||..|.||||||.|.||||| || .||||||||.||||||
BL02678___cot 417 CAAAGGGGCTCCGGCGGAACTGCCGATCGA-GAGCATTACCTCCTTGCAC 465
BSNT_01959___ 664 CCGCTCGGTTTTTAA 678
||||||||.||||||
BL02678___cot 466 CCGCTCGGCTTTTAA 480
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