Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01964 and BL02671
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:30
# Commandline: needle
# -asequence dna-align/BSNT_01964___cotX.1.5803.seq
# -bsequence dna-align/BL02671___cotX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01964___cotX-BL02671___cotX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01964___cotX-BL02671___cotX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01964___cotX
# 2: BL02671___cotX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 560
# Identity: 332/560 (59.3%)
# Similarity: 332/560 (59.3%)
# Gaps: 124/560 (22.1%)
# Score: 802.0
#
#
#=======================================
BSNT_01964___ 1 ATGGAATCAAGACCTTACTCATGGGTTGCCCTAGATAATTC-----ATGT 45
||||||.|||||||.||.||||||.||||.||.|| | |||.
BL02671___cot 1 ATGGAAACAAGACCATATTCATGGATTGCGCTTGA-----CCCGGAATGC 45
BSNT_01964___ 46 ACACACCCGGGTAGCGGCTATAA-------------AAGAGAAGCGGTT- 81
..|||.||.||.|.||..|||.| ||||.|| ..||
BL02671___cot 46 GAACATCCAGGCAACGATTATCACCCTAGTTATCCTAAGAAAA--AATTA 93
BSNT_01964___ 82 TGTCATGACGT----TTG---TTCTGG-AGGAGAAG------ATGCTAAC 117
|||.|.||| | ||| .|.||| |||| ||| |||
BL02671___cot 94 TGTGACGAC-TATACTTGCAACTGTGGTAGGA-AAGGGCAAAATG----- 136
BSNT_01964___ 118 GCATT-TCAAGATT------TTGATCAGCTAAGCCTTAACAAACAAACAT 160
||.|| || |||| |.|||||.||....|||||||||||....|
BL02671___cot 137 GCTTTATC--GATTCTGACCTAGATCAACTTCATCTTAACAAACAGCTCT 184
BSNT_01964___ 161 CTGAAGAAATGATTATCGTTAGAGATTCTTGCGACATTGATGTT-ACGTC 209
|.||.||||.|||.|||.|||.|||.||||| ||||||| |.|||
BL02671___cot 185 CAGATGAAACGATCATCATTAAAGACTCTTG------TGATGTTCAAGTC 228
BSNT_01964___ 210 T--ACT---GACACTCAA--GTTGCTGCATCCATTCA----AGCCGCCCT 248
| ||| |||||.||| |||| |||| ||.||| |||.||
BL02671___cot 229 TCAACTGAAGACACACAAACGTTG--GCAT-CAGTCATGACAGCTGC--- 272
BSNT_01964___ 249 CCAAAC---TGCTGTCATTACAATTGTAAAC-TTATCAATAGCAGACGGT 294
.||||| .|||||.|.||..|||.|...| |||||.|| ||...|
BL02671___cot 273 ACAAACACTAGCTGTTACTATTATTCTCGCCATTATCGAT----GATCCT 318
BSNT_01964___ 295 GATTTAGCAGATCAAGTCATCCAA--GACTTAGTGCAACAATCTGTTAAC 342
|||.||||.||.|..|||| ||| ||..|..||||...|.|||..||.
BL02671___cot 319 GATCTAGCCGAACTTGTCA--CAACTGATCTGTTGCAGGTAACTGCCAAT 366
BSNT_01964___ 343 AAGCAGTCAAACCGTCAAAAACTAGTGATTGAAAACTCTAGAAATGTTAA 392
||.||..|.|||.|.||||||.|.|||||.||.||.||.||||||||..|
BL02671___cot 367 AAACAAACGAACAGACAAAAATTGGTGATCGATAATTCCAGAAATGTACA 416
BSNT_01964___ 393 TGTCACAAC--AACCGATACAGATATTGCA-CTATCGATC-CAAACAC-- 436
||||||||| || ||||||||.| || ||||| ||| .||.|||
BL02671___cot 417 TGTCACAACCGAA--GATACAGACA---CAGCTATC-ATCGTAAGCACAT 460
BSNT_01964___ 437 -TGACACAGACACTTG------------CCGCTACAATTATCGCAGTTGG 473
|| ..||.||..||| ||| |..||||| ||.||
BL02671___cot 461 TTG-TTCAAACTGTTGTAATCACCATCACCG---CCCTTATC---GTCGG 503
BSNT_01964___ 474 AATCCTCTAA 483
..|.||.|||
BL02671___cot 504 CCTTCTATAA 513
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