Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03010 and BL02664

See Amino acid alignment / Visit BSNT_03010 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_03010___yngB.1.5803.seq
#    -bsequence dna-align/BL02664___yngB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03010___yngB-BL02664___yngB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03010___yngB-BL02664___yngB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03010___yngB
# 2: BL02664___yngB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity:     636/933 (68.2%)
# Similarity:   636/933 (68.2%)
# Gaps:          81/933 ( 8.7%)
# Score: 2039.5
# 
#
#=======================================

BSNT_03010___      1 ATGAGAAAAAAAGTGAGAAAAGCAGTTATTCCCGCAGCGGGTTTAGGAAC     50
                     |||      |||||.|.|||||||||.||.||.|||||.||.|||||.||
BL02664___yng      1 ATG------AAAGTAAAAAAAGCAGTCATCCCAGCAGCCGGATTAGGTAC     44

BSNT_03010___     51 GAGATTTCTGCCGGCGACAAAGGCGCAGCCTAAAGAAATGCTCCCAATCG    100
                     |||||||.|||||||.|||||.||||||||.|||||||||||.||.||.|
BL02664___yng     45 GAGATTTTTGCCGGCAACAAAAGCGCAGCCGAAAGAAATGCTGCCGATTG     94

BSNT_03010___    101 TCGACAAACCAGCAATCCAATATATTGTAGAAGAGGCCGCAGAGTCAGGA    150
                     ||||.|||||.||.||.||||||||.||.|||||.||.|...|.|||||.
BL02664___yng     95 TCGATAAACCGGCCATACAATATATCGTGGAAGAAGCTGTCCAATCAGGC    144

BSNT_03010___    151 ATTGAAGATATACTGATTATTACAGGGAGAAACAAACGCTCGATTGAAGA    200
                     ||||||||.||.||.||.||||||||.|||||.||.||.|||||||||||
BL02664___yng    145 ATTGAAGACATCCTTATCATTACAGGAAGAAATAAGCGTTCGATTGAAGA    194

BSNT_03010___    201 TCATTTTGATCGGTCGGCGGAATTGGAATTCAATCTCCGGGAAAAAGGCA    250
                     .||||||||.||.||.|.||||.|.||....||.||.|.||..|||||.|
BL02664___yng    195 CCATTTTGACCGCTCTGTGGAACTTGAGCAAAACCTGCTGGCCAAAGGAA    244

BSNT_03010___    251 AGACGGAGACAC-------TTAAGGAAATGCAGC-AGATTGCCGATTTGG    292
                     |       |.||       |.||.||.||.| || ||||.||||||.|||
BL02664___yng    245 A-------AAACGATGTGTTAAAAGAGATAC-GCGAGATCGCCGATATGG    286

BSNT_03010___    293 CCAACATTCATTACATCCGCCAGAAAGAACCGCTCGGATTAGGCCATGCG    342
                     |.||.||||||||.|||||.||.||.||.||..||||..|.||.|||||.
BL02664___yng    287 CGAATATTCATTATATCCGGCAAAAGGAGCCCATCGGCCTCGGACATGCA    336

BSNT_03010___    343 GTGCTGTGTGCGGAGCATTTTATCGGAGATGAGCCTTTTGCTGTTCTCTT    392
                     |||.|.|..||..|||||||.|||||.||||||||.|||||.||.|||.|
BL02664___yng    337 GTGTTATCGGCCAAGCATTTCATCGGTGATGAGCCGTTTGCCGTCCTCCT    386

BSNT_03010___    393 AGGTGATGATATTATGGTGTCTGAAACACCGGCTCTTCGGCAATTAATGG    442
                     .||.||.|||||.||||||||.|||||||||||.|||.||||..|..|.|
BL02664___yng    387 CGGCGACGATATCATGGTGTCAGAAACACCGGCGCTTAGGCAGCTGCTCG    436

BSNT_03010___    443 ATGTATATGACGTTTATGGCACAGAGGTTGTCGGTGTACAGTCAGTTCTC    492
                     |.||||||||.|..|||...||.||.||..||||.||.|||.|.||....
BL02664___yng    437 AAGTATATGAAGAATATCAGACCGAAGTGATCGGCGTTCAGCCCGTCGAT    486

BSNT_03010___    493 CCTGAGGATGTCAGCAAATATGGTATTATAAATACATCAGGGTCTCAAGG    542
                     ||.|.|||.||.||||||||.||.||.||..|.|||||.|.| |..|||.
BL02664___yng    487 CCAGCGGACGTGAGCAAATACGGCATCATTCAGACATCCGCG-CAAAAGA    535

BSNT_03010___    543 GCA---TGTATACGAAGTGAACGATTTAGTGGAAAAGCCTTC--TCCTGA    587
                     .||   |||||  .||.|..|||||.|.||.||||||||..|  ||  .|
BL02664___yng    536 ACAAAGTGTAT--CAAATCGACGATCTTGTAGAAAAGCCGACCGTC--AA    581

BSNT_03010___    588 AGAAGCACCTTCGGAAATCGCAGTAATGGGACGTTATGTGCTGAATTCTT    637
                     |||.||.|||||..|.|||||.||.|||||.||.||||||||||...|||
BL02664___yng    582 AGATGCGCCTTCAAATATCGCGGTCATGGGCCGCTATGTGCTGAGGCCTT    631

BSNT_03010___    638 CGATCTTCTCCGT-TTTGAAGACAATTG--GCAGAGGCGCGGGCAACGAA    684
                     ||||.|||.|.|| .|.||  ||||..|  || |.||||||||.||.|||
BL02664___yng    632 CGATTTTCCCTGTGCTCGA--ACAAACGAAGC-GCGGCGCGGGAAATGAA    678

BSNT_03010___    685 ATTCAGCTGACAGATGCGCTTCGTGAGGTTTGCCGTAAGG-----AGCCG    729
                     |||||||||||.||.||.||..|.||..|.|||||   ||     |||  
BL02664___yng    679 ATTCAGCTGACTGACGCACTAAGGGAAATCTGCCG---GGAACAAAGC--    723

BSNT_03010___    730 ATCCACGCCCGGCTGC----TGGAAGGAAATCGATATGACATTGGCGATA    775
                     ||..|.||.|    ||    ||.||||||..||.|.|||.||.|||||.|
BL02664___yng    724 ATGTATGCGC----GCAAATTGAAAGGAAGCCGCTTTGATATCGGCGACA    769

BSNT_03010___    776 AACTAGGCTGTTTTAAAGCGAGCACCGAAATCGGCTTAATGCGTTCCGAA    825
                     |.||.|||.|.|||||||||||.||.|||||||.|.|.|||||...|||.
BL02664___yng    770 AGCTGGGCAGCTTTAAAGCGAGTACGGAAATCGCCCTCATGCGGGACGAG    819

BSNT_03010___    826 ATGAGATCTCAGCTTTTGGCCTATTTAGAAGATGTGA-----TCAAACGG    870
                     |||.|..|..|.||..|.|||||..|.||      ||     |.|||   
BL02664___yng    820 ATGCGGCCAAAACTGCTCGCCTACCTGGA------GAGCGTCTTAAA---    860

BSNT_03010___    871 GAAACGAA----AGAAATGCTGC--GGTAA---    894
                      |||.|||    ||||| |..||  ||.||   
BL02664___yng    861 -AAAAGAAGCGCAGAAA-GGAGCATGGCAATGA    891


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03010 and BL02664

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
