Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01986 and BL02654
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:31
# Commandline: needle
# -asequence dna-align/BSNT_01986___yjcL.1.5803.seq
# -bsequence dna-align/BL02654___yjcL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01986___yjcL-BL02654___yjcL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01986___yjcL-BL02654___yjcL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01986___yjcL
# 2: BL02654___yjcL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1255
# Identity: 858/1255 (68.4%)
# Similarity: 858/1255 (68.4%)
# Gaps: 128/1255 (10.2%)
# Score: 2741.5
#
#
#=======================================
BSNT_01986___ 1 TTGCATTCT---TTGATTTCTTCTGATGACGCATGGGTATTGTGGGGGTT 47
.||.||||| ||||||||..|.|||||||..|||||..|.|||||.||
BL02654___yjc 1 ATGAATTCTTCATTGATTTCACCGGATGACGTGTGGGTGCTTTGGGGATT 50
BSNT_01986___ 48 TATTGCGGTGTGGGCGGCAGTGAGCATCGGGCTGGAGCAGCGCTTTAAGT 97
|||.|||||||||||.||.|||||.||.....|.||||||||.|||...|
BL02654___yjc 51 TATCGCGGTGTGGGCTGCTGTGAGTATTTATTTAGAGCAGCGGTTTCGCT 100
BSNT_01986___ 98 GGGCGTCCGCTGTGTCGGGTGC--TATTATCGCGCTGGCAGGTGCTATGG 145
||||..|||||||.|||||.|| ||| |.||.||||..||..|.|||.
BL02654___yjc 101 GGGCTGCCGCTGTATCGGGGGCCGTAT--TGGCACTGGGCGGATCGATGC 148
BSNT_01986___ 146 TGTTTACAAATGTAGGAGTGCTTCCTGTTGAGTCGCCTGTGTATGATACT 195
|||||||.||||.|||..|.|||||.|..||||||||..|.||||||.|.
BL02654___yjc 149 TGTTTACTAATGCAGGGATTCTTCCGGCCGAGTCGCCCTTCTATGATGCG 198
BSNT_01986___ 196 GTGTGGTCTTATGTGGTGCCGCTGGCGATACCACTTTTATTG---TTTCA 242
||||||||.|||||.||.|||||.|||||.|| |||..|| |||||
BL02654___yjc 199 GTGTGGTCCTATGTTGTTCCGCTTGCGATTCC---TTTGCTGCTTTTTCA 245
BSNT_01986___ 243 GATCAATGTTCGGCAAATTTTTAAGGAAA---GCAGGCGTTTGCTGTTTA 289
.||||||||.|||.|.||..|.||.|||| ||||.|.||||.|| |
BL02654___yjc 246 AATCAATGTGCGGAAGATCCTGAAAGAAAGCGGCAGACTTTTGATG---A 292
BSNT_01986___ 290 TTTTTCTG-ATTAGCTCCGCT-GGCACT--GTCCTTGGGAGCATTCTAGC 335
|.||| || ||.||| .|||| |||||| |.|| ||.|||.|..|.||
BL02654___yjc 293 TGTTT-TGCATCAGC-GCGCTGGGCACTGCGGCC--GGAAGCGTCATTGC 338
BSNT_01986___ 336 TTTTTTTCTTCTCAAACAGCATATTCCTTATCTCGATAAAATCGGCGGGA 385
|||||||||..|.||..|.||.|||||..|.||.||||||||||||||.|
BL02654___yjc 339 TTTTTTTCTGTTTAAGGATCAGATTCCGCACCTTGATAAAATCGGCGGCA 388
BSNT_01986___ 386 TGATCAGCGCCTCTTATATCGGCGGCGGGGTCAACTTTGCGGCGATGGCG 435
||||||||||||||||||||||.||.||.||.||.|||||.||||||||.
BL02654___yjc 389 TGATCAGCGCCTCTTATATCGGGGGAGGCGTGAATTTTGCAGCGATGGCC 438
BSNT_01986___ 436 GCAAAATT-TGAGACGCCTGGTGAATATGTGTCGGCTACCGTTGTGGCTG 484
||.||.|| |.| ||.||.|||||.|||||.||..|.||.||.||.||.|
BL02654___yjc 439 GCCAAGTTCTCA-ACTCCCGGTGAGTATGTATCATCGACGGTGGTTGCGG 487
BSNT_01986___ 485 ATAATTTTATGATGGCGCTTTTGTTTTTT--ATTTTAATCAGCATTCCTG 532
|||||||||||||| ||||||.|||||| ||||||||..|.||.||.|
BL02654___yjc 488 ATAATTTTATGATG--GCTTTTCTTTTTTTCATTTTAATGGGGATACCGG 535
BSNT_01986___ 533 CACTCAAATGGTTTCAGCGGCATTATGCCATGCCGTT--TGAAGAGAAGG 580
|.||.|.||||||||| |..|.||...|.|||| .||||.|..||
BL02654___yjc 536 CGCTAACATGGTTTCA-----AAAACGCTTCGGCGTTCAGGAAGTGGCGG 580
BSNT_01986___ 581 TAAAAGCCGATGAAAACAGCGGAAA-CAGTGCTGAAAGCTATTGGAAACG 629
||.| |.|||.||| ||| ||.|||..|||||||||..|
BL02654___yjc 581 -----GCGG-------CCGCGAAAATCAG-GCGGAAGCCTATTGGAAGAG 617
BSNT_01986___ 630 GAAGGATATTTCCTTAAAGGATATCGCTTTTAATGCCGGTGCCGCTTTCG 679
.||.||.||.|||||..||||.||||||||.||...|||..||||.||.|
BL02654___yjc 618 AAAAGACATCTCCTTGCAGGACATCGCTTTAAACATCGGAACCGCCTTTG 667
BSNT_01986___ 680 CACTTGTTGCGGTTAGTATG---AAGGTTTC--CGGTTATTTTAAA--AG 722
|..|.|||||.|| ||.|| ||| | |||.|.||||.|| |.
BL02654___yjc 668 CGATCGTTGCTGT--GTCTGTAAAAG----CAGCGGCTTTTTTCAAGGAA 711
BSNT_01986___ 723 CATTTTTTCTCATCCCCTGCTGAC--CGG------------------TAC 752
|.||||| ||.||||| ||| ||.
BL02654___yjc 712 CGTTTTT---------CTTCTGACGGCGGATTTCAGTTTCTTGCCTTTAT 752
BSNT_01986___ 753 GCTTGGCGATCAGTACCTGGTGCTTACGTCTTTAACTGTTCTTATCATTT 802
.||.|||||.||||.||||.||||.|||.| .||.|..||||
BL02654___yjc 753 TCTGGGCGACCAGTTCCTGCTGCTGACGAC---------GCTGACAATTT 793
BSNT_01986___ 803 TTCT----------TTTCCCGCGTTTTTTTGAAAGGCTCAATGGATCTCA 842
|.|| |||||| ||.|.|||||||.||||....||.||.||
BL02654___yjc 794 TGCTGACGGTAGTGTTTCCC-CGCTATTTTGAACGGCTGCGCGGCTCACA 842
BSNT_01986___ 843 GGAGCTTGGAACCTTTTTGATTTATTTGTTTTTTGTGGTGATCGGCATTC 892
||||.|.||.||.|.|||||||||.||.||.|||||.|||||.|||||||
BL02654___yjc 843 GGAGATCGGGACTTATTTGATTTACTTATTCTTTGTCGTGATTGGCATTC 892
BSNT_01986___ 893 CTGCAGATCTCCGCTTAATCGTCACGAATGCGCCTCTTATTCTATTATTC 942
|.||.|||.|.||..|.|||.|||.|||.||.||.||..|.||...|||.
BL02654___yjc 893 CGGCGGATTTGCGGATCATCCTCATGAACGCCCCGCTCCTCCTGGCATTT 942
BSNT_01986___ 943 GTGTTTATCATTGCGATTAGCAATTTAGC-GGTTTC---CTTAGCTGCCG 988
||.|||.|.|||||.||...|||..| || .||.|| ||| ||| ||
BL02654___yjc 943 GTCTTTGTGATTGCCATGTCCAACCT-GCTCGTATCGCTCTT--CTG-CG 988
BSNT_01986___ 989 GAAAATTGTTCCGTGTGCGGCTTGAAGAAATTCTGCTCGCCGT-CAATGC 1037
||||..||||.|||.|.|||||.||.|||||||| ||.|.|.| |||.||
BL02654___yjc 989 GAAAGCTGTTTCGTTTTCGGCTCGATGAAATTCT-CTTGGCTTGCAACGC 1037
BSNT_01986___ 1038 TACTGTCGGGGGACCGACGACTGCGGCTGCGATGGCAATTGCCAAGGGAT 1087
..|||||||.|||||||||||.|||||.||||||||.||||||||.||.|
BL02654___yjc 1038 ATCTGTCGGCGGACCGACGACAGCGGCGGCGATGGCGATTGCCAAAGGCT 1087
BSNT_01986___ 1088 GGCGGGATCTTGTCGC-CCCGATCATGCTTGTCGGTACGCTCGGCTACTT 1136
||||||..||.||.|| |||| |.|||||.|||||.|||.||||.||..|
BL02654___yjc 1088 GGCGGGGCCTCGTTGCTCCCG-TAATGCTGGTCGGGACGTTCGGATATCT 1136
BSNT_01986___ 1137 AATCGGCAACTATGTTGGCACTTTTATGGGAAATTGGTTTTCTTCCTTCT 1186
.||||||||.|||||.|||||.||..||||.|..||||||||..||.|.|
BL02654___yjc 1137 GATCGGCAATTATGTCGGCACCTTCTTGGGCACATGGTTTTCCACCCTGT 1186
BSNT_01986___ 1187 TATAA 1191
|||||
BL02654___yjc 1187 TATAA 1191
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