Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02223 and BL02651
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:44
# Commandline: needle
# -asequence dna-align/BSNT_02223___ykoC.1.5803.seq
# -bsequence dna-align/BL02651___ykoC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02223___ykoC-BL02651___ykoC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02223___ykoC-BL02651___ykoC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02223___ykoC
# 2: BL02651___ykoC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 891
# Identity: 454/891 (51.0%)
# Similarity: 454/891 (51.0%)
# Gaps: 282/891 (31.6%)
# Score: 917.5
#
#
#=======================================
BSNT_02223___ 1 ATG--AAGCAGCCGTT-ACATCTCATTAATGCGACTGTGAA----AGCGG 43
||| |||||...||| ||.||| |.||.|..|||| ||||.
BL02651___yko 1 ATGAAAAGCAATGGTTCACTTCT------TTCGGCATTGAACCCGAGCGC 44
BSNT_02223___ 44 C-GGCGGTTTT---------TTGT--TGTGTCGTCATGCTGTCGTTTATT 81
| .||..|||| |.|| |||| |||.||...||||.||
BL02651___yko 45 CAAGCTCTTTTCCCACCTCCTGGTCATGTG----CATTCTCATGTTTGTT 90
BSNT_02223___ 82 TACAACCCTTACACCCCGGCATGTTTTTATATCA---------------T 116
|..||.|| .|..|||.| ||||| ||| |
BL02651___yko 91 TCAAATCC---GAAACCGAC---TTTTT---TCATTTGGCTGTTTGCGGT 131
BSNT_02223___ 117 CATCATCGCGGGCGTTTTACTGGCGGCCGGA----ATCCCATTGAA-AAA 161
..|||| ||||..||||...||.||..||| .||..|||.|| .||
BL02651___yko 132 TGTCAT--CGGGATTTTTTTCGGGGGATGGACTTTGTCTTATTTAAGTAA 179
BSNT_02223___ 162 ATGGTTGTTG-------TTTACGATTCCGTTTTTGATTTTAGCA-TTCGG 203
|.||.||.|| || ||| |||||.|||.|.|.| ||.||
BL02651___yko 180 ACGGCTGCTGCCTTATCTT----ATT---TTTTTTATTCTCGTATTTTGG 222
BSNT_02223___ 204 GTGCGTGTGGACAGCCGCAGTTTTTGGAAAGGTGCCGACAACACCGGAT- 252
.| ||..||||| ||||.||||||| |||..|.|| |||
BL02651___yko 223 AT-------GATGGCCGC--TTTTGGGAAAGG---CGAGGAAAC--GATT 258
BSNT_02223___ 253 ----AATTTTTTGTTTCAAGCAGGCCCTATCTCCATTAACAGCGAT---- 294
||| ||.|||...||| |||.|
BL02651___yko 259 TGGGAAT---------------GGGCCTGGTTCC-------GCGTTACCG 286
BSNT_02223___ 295 ---AATGTGTCTG---TCGGC-----ATCTCCCT-CGGGTTTCGTATTTT 332
||.|.|||.| |.||| |||.|.|| |||
BL02651___yko 287 AGGAAAGCGTCGGCAATGGGCTGACAATCGCGCTGCGG------------ 324
BSNT_02223___ 333 ATGCTTTTCCGCCTTATC-GATGATGTTTGTT-TTTA---CAACCGATCC 377
|||| ||.||.||.|| .||...||.|.|| |||| |||| |.||
BL02651___yko 325 ATGC---TCGGCTTTGTCACATACGGTCTCTTGTTTACGTCAAC--AACC 369
BSNT_02223___ 378 GATTTTA-----TTTATGCTGAGCCTTGTCCAGCAGTGCAGGCTCTCACC 422
|||||.| |||||..|||||||..|.||.||.|||||..|.||.||
BL02651___yko 370 GATTTGACGCAGTTTATTATGAGCCTGATTCATCAATGCAGATTGTCGCC 419
BSNT_02223___ 423 AAA----GCTCGCGTACGGTGTCATCGCAGGCTTTCGCTTTCTTCCGCTG 468
.|| ||| ||.||..|..|.||.|||||.||.|||.|.|||||.
BL02651___yko 420 TAAATGGGCT----TATGGCTTGCTGGCCGGCTTCCGTTTTGTCCCGCTT 465
BSNT_02223___ 469 TTAAAGGATGAGGTC-CAGCTGATTCAGCA---------GGCTCATAAAA 508
||..| ||| .|||| ||| ||| |||.||.||||
BL02651___yko 466 TTTCA-------GTCGGAGCT--TTC-GCAAATGAAGGCGGCGCACAAAA 505
BSNT_02223___ 509 TCAGAGG--AGGAGCGGCGGAGAGCGGCATCATTAATAAAATCGGT---- 552
||||.|| |..||| ||.||||..|.|
BL02651___yko 506 TCAGGGGCTATAAGC-------------------AAAAAAACAGCTGGAA 536
BSNT_02223___ 553 -GCGTTAAAACGATATACCATACCGCTATTGGTAAGC--GCCATCAGAAA 599
|||||.|..||.|||.|..|.|||.|.|| |..|| |.||||.|.||
BL02651___yko 537 GGCGTTTATTCGCTATGCGCTGCCGTTGTT--TTCGCAAGGCATCCGCAA 584
BSNT_02223___ 600 AGCGGAACGGACAGCGCTTGCGATGGAATCGAAAGGATTTACAGGAAGCA 649
|.|||||.|.|..||..||||.||||||.|||.|||.|||||.||.| ||
BL02651___yko 585 ATCGGAAAGAATCGCCGTTGCCATGGAAGCGAGAGGGTTTACCGGTA-CA 633
BSNT_02223___ 650 GAA-ACCGGACATACTA-CAGGACATTGAGCGTGAAC--CGGCGC----- 690
.|| ||||.||.||||| || ||| |||.||
BL02651___yko 634 AAAGACCGCACCTACTATCA--------------AACAGCGGGGCTTTCC 669
BSNT_02223___ 691 ------GACTGGGTGTTCTTTTGC----CTCGTCCTCTTATTATTCGC-- 728
||||..|| .|.|||||| ||.| .||.|.||||
BL02651___yko 670 GGAAAAGACTTCGT-ATATTTTGCGGGTCTGG------CATCAGTCGCAG 712
BSNT_02223___ 729 --GGGATCCTTT-CTCGTA-TCTTTATGTTTCGCATCATAA 765
||||| ||| ||| | |.||||.
BL02651___yko 713 CGGGGAT--TTTGCTC--ACTTTTTAA-------------- 735
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