Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02224 and BL02650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:44
# Commandline: needle
# -asequence dna-align/BSNT_02224.1.5803.seq
# -bsequence dna-align/BL02650___ykoD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02224-BL02650___ykoD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02224-BL02650___ykoD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02224
# 2: BL02650___ykoD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1930
# Identity: 970/1930 (50.3%)
# Similarity: 970/1930 (50.3%)
# Gaps: 623/1930 (32.3%)
# Score: 2023.5
#
#
#=======================================
BSNT_02224 1 ATGCAAGCCTTT----GATG-AGCTTCTTAAGGTTGACGAGCTCAGCTTC 45
||||...|.||| |||| || |||..||..|| ||.|.||.
BL02650___yko 1 ATGCGTTCATTTCTCGGATGCAG-----TAACCTTTCCG---TCCGTTTT 42
BSNT_02224 46 TCTTA------TGAAGAAGACGAGAAACCGGTTTTTCAAGACATTTCGTT 89
|.|.| ||||..||.|..|.|.|.|||.|..| |.|||.|
BL02650___yko 43 TATCATCGTCCTGAAACAGTCTTGGACCGGGTCTCGC------TGTCGAT 86
BSNT_02224 90 TGAGCTTCAAAAAGGAGAATGTGTTTTATTATTAGGACCGAGCGGGTGCG 139
||||| |.||||||...||..|..||.|.||.||||||||..|||
BL02650___yko 87 TGAGC------AGGGAGAAAAAGTGCTGATACTCGGGCCGAGCGGAAGCG 130
BSNT_02224 140 GTAAAAGCTCGCTCGCCCTTTGTTTAAACGGTCTATATCCGGAGGCTTGC 189
|.||| ||| |||.|.| |.|||| .||||.|
BL02650___yko 131 GAAAA-------TCG------------ACGCTGT-TGTCCG--TGCTTTC 158
BSNT_02224 190 GACGGCATTCAGTCC-GGACATGTATTTCTATTTCAAAAGCCG--GTCAC 236
||||| |||.||| |.||||.| ..||||.| |||||
BL02650___yko 159 --CGGCA-TCATTCCTGAACATAT-----------CGAAGCTGAAGTCAC 194
BSNT_02224 237 AGATGCTGAG----ACCTCCCAAACGATTGCTCAGCATGCCGGGGTCGTT 282
|| || ||| |||.|..||| .||| |||||.||..|.
BL02650___yko 195 AG--GC-GAGGTCAACCGCAGAAA--------GAGC--GCCGGCGTTATG 231
BSNT_02224 283 TTTCAGGATCCTGATCAGCAGTTCTGCATGCTGACGGTGGAGGACGAAAT 332
|||||||||||.|||..||||||.||||||||....||.||.||.|||||
BL02650___yko 232 TTTCAGGATCCGGATTCGCAGTTTTGCATGCTTCATGTTGATGAGGAAAT 281
BSNT_02224 333 TGCATTCGGGCTGGAAAATC--TGCAAATTCCAAAAGAAGAAAT-GACAG 379
.||.||..|.||.||||||| |.| .||||...|.||||.|| |||.|
BL02650___yko 282 CGCGTTTAGCCTTGAAAATCGATCC--GTTCCGCCAAAAGATATGGACCG 329
BSNT_02224 380 AGAAAATCAACAC------------------CGTATTAGAAAAATTGCGC 411
.||||.|.| ||..|| |||.||.|
BL02650___yko 330 ----CATCATCTCGGAGCTGATGGAGCTGGTCGGTTT--AAAGATAG--- 370
BSNT_02224 412 ATTACCCATTTAAAAGAAAA-----AACGATATCTACCCTT-TCAGGAGG 455
|.||||||| |.||| |.|||| |||||.||
BL02650___yko 371 -----------ATAAGAAAACGCCGATCGA-----AACCTTGTCAGGCGG 404
BSNT_02224 456 ACAAAAGCAAAAAGTGGCTCTCGCCTGTATTTTGGCGATGGAGCCTGA-- 503
....|||||.|...||||..|.||.||..|..|.||..||||||||||
BL02650___yko 405 TATGAAGCAGAGGCTGGCATTAGCGTGCCTGCTCGCTTTGGAGCCTGAAG 454
BSNT_02224 504 -GCT-TATTATTTTAGATGAGCCGACCTCTCTTTTAGACCCTTTCTCAGC 551
||| | ||||.|||||||||||..|.|...|.||||| ...||||
BL02650___yko 455 TGCTGT----TTTTTGATGAGCCGACGGCGCAGCTGGACCC--GGCCAGC 498
BSNT_02224 552 GCGG---GAGTTCGTTCATCTGATGAAGGATCT---TCAGCG-------- 587
||| || ||||| .|| .|| ||.|||
BL02650___yko 499 -CGGCAAGA-------CATCT-TTG-----CCTTGCTCCGCGACGTTTCC 534
BSNT_02224 588 GGAAAAAGGTTTCAGCC-----TCCTCGTCATTGAGCACCAGCTTGATGA 632
.|||||||....|||.| |..||||| ||.|||..||
BL02650___yko 535 CGAAAAAGCGGACAGACGATGGTGTTCGTC---GAACACGTGC------- 574
BSNT_02224 633 ATGGGCGCCT--------TGGATTGAGAGAACGATCGTACTC-------- 666
|||.||.|| |||||.||..||...|||.|..||
BL02650___yko 575 -TGGACGGCTGTATCGAGTGGATGGACCGAGTCATCCTTTTCAATGAAAA 623
BSNT_02224 667 --GACAAATCAGGCAAAAAGGCGCTGGATG----GCTTGACGAAA----- 705
||||.|||| .|||| |||| ||..||.||||
BL02650___yko 624 GGGACAGATCA---------TCGCT-GATGGAAAGCCGGAAGAAATCGTC 663
BSNT_02224 706 AATCTATTTCAGC-----ATG-AAGCGG-AGACA-CTAAAGAAATTGGGC 747
||.|..||||||| ||| |||||| ||.|| || |||
BL02650___yko 664 AAACATTTTCAGCCGGAAATGAAAGCGGCAGGCATCT----------GGC 703
BSNT_02224 748 ATCACCATTCCAAAGGTCTGTCATCTGCAG---GAAAAGCTGAGTATGCC 794
|.| ||||| ||||...|.|||| |..|||.||
BL02650___yko 704 AGC------CCAAA---CTGTACCCCGCAGTATGGGAAGATG-------- 736
BSNT_02224 795 GTTTACTTTATCAAAAAAGATGCTGTTCAAAGAGCCTATTC--CTCCCGG 842
|||.||.|.|||| ||.||| || |||.|.|
BL02650___yko 737 -------TTACCACACAAGA---TGATCA----------TCCGCTCGCCG 766
BSNT_02224 843 GCATGC-------------------CAAAAAGAAGGAAGCTCCTTCTGGG 873
.||.|| .|||.||.|||||||
BL02650___yko 767 TCAAGCTCTCTTCTACATTGAAAATGAAAGAGGAGGAAGC---------- 806
BSNT_02224 874 GAGAGTGTGCTTGAA---------GTCAGCAG-------CCTTTCGTTCG 907
||| |||||||| |.|.|.|.||
BL02650___yko 807 ------------GAAAAACAGGCCGTCAGCAGACAGGGACATATTGATC- 843
BSNT_02224 908 CG---AGAGGACAGCAGACGAT----TTTC----AAAGACATCAGCTTTT 946
|| ||||||| || |.|||| |.|| ||||| |
BL02650___yko 844 CGCACAGAGGAC-GC-GGCGATCGGCTATCGGAAAAAGA----------T 881
BSNT_02224 947 CGTTGC-----GC--------GGAGGCTC---------------TTT--- 965
|||||| || ||||..|| |||
BL02650___yko 882 CGTTGCCGACGGCATCAACCTGGAGATTCCAAGAGGGGAATGGATTTCCG 931
BSNT_02224 966 --AACGGCGCTTGTTGGTCCGAATGGCACTGGAAAATCGACGCTCTTATC 1013
|.||||| .|||.||||..|||||....|||.|.|||..
BL02650___yko 932 TCATCGGCG----------GGAACGGCAGCGGAAAGAGTACGTTTTTAAA 971
BSNT_02224 1014 AGTTCTGGCCCGTCTCATGAAACCG-CAAAGCGGCAAA------ATCCTT 1056
|..||||..|.|.|| ||||.|.| |||| ||| || ||
BL02650___yko 972 AAGTCTGATCAGGCT--TGAAGCGGTCAAA-----AAAGGGCGCAT--TT 1012
BSNT_02224 1057 CTCT--ATGACCAGCCGCTGCAGAAAT------ATAAAGAAAAAGAATTG 1098
.||| |.|.||.|..||||.|||||| ||
BL02650___yko 1013 ATCTGGAGGGCCGGGAGCTGAAGAAATGGTCCGAT--------------- 1047
BSNT_02224 1099 CGTA-----AACG-GATG---GGATTTGTTTTTCAAAACCCTGAGCATCA 1139
|||| .||| ||.| ||.|||||.|||||||||||.||||.|||
BL02650___yko 1048 CGTACGCTTTACGAGAAGGCCGGCTTTGTCTTTCAAAACCCCGAGCTTCA 1097
BSNT_02224 1140 ----ATTCGTCACCGATACGGTGTATGACGAGCTTCTGTTCG--GCCAGA 1183
||||| .||.|||||||.|||||||.|...||||| ||.|||
BL02650___yko 1098 ATTTATTCG----GGACACGGTGTTTGACGAGATCGCGTTCGGAGCGAGA 1143
BSNT_02224 1184 AAGCAAATGCT-----------------GAAACTGAGAAAAAAGCGCAAC 1216
.|||..| ||| |||| .|||||..||..||
BL02650___yko 1144 CAGCGGA-GCTGGCCGGAGGAGCAGGTCGAAA---GGAAAACGGCTGAA- 1188
BSNT_02224 1217 ACCTGCTGCAGCGTTTTGGTCTTGCGCATTTGGCTGATCAT--------- 1257
.||||||||...||.||.||| |.||.||||
BL02650___yko 1189 --TTGCTGCAGGAATTCGGACTT---------GATGGTCATCAAAAAGCG 1227
BSNT_02224 1258 CATCCGTTTGCGATCAGCCAAGGGCAAAAACGGCGACTGAGCGTAGCTAC 1307
|||||.|||.|..|.||||..|||||.||||||||..|.|||||.||.||
BL02650___yko 1228 CATCCCTTTACATTAAGCCTTGGGCAGAAACGGCGTTTAAGCGTTGCGAC 1277
BSNT_02224 1308 TATGCTCATGCATGACGTAAAGGTTTT----ATTATTAGACGAACCAACC 1353
.|||||..||..|||| .|||.||| .|..|| |||||.||.||.
BL02650___yko 1278 GATGCTTTTGTTTGAC---CAGGATTTGCTGCTGCTT-GACGAGCCGACA 1323
BSNT_02224 1354 TTTGGCCAGGATGCCCG-CACGGCGGCTGAATGCATGGAAATGATTCAGC 1402
||.||.||||| || .|.|.||||..|| |||.||||..|||
BL02650___yko 1324 TTCGGTCAGGA----CGAAAAGACGGCAAAA------GAATTGATCAAGC 1363
BSNT_02224 1403 GTATCAA-----GGCAG----AGGGAACCGCTGTCCTTATGATTACACAC 1443
|..|.|| ||||| .||||||..|..|..|.|||.|.||.||.
BL02650___yko 1364 GCTTAAAGGAGCGGCAGGAACGGGGAACGACGATTGTGATGGTGACGCAT 1413
BSNT_02224 1444 GATATGGAGCTAGTCTCTTCGTATG---------CTGACAGCGTGCTTGT 1484
||.||||| |.||||| | |.|||.|.||..|.||
BL02650___yko 1414 GACATGGA--------CATCGTA-GACGAGCACTCCGACCGGGTCATCGT 1454
BSNT_02224 1485 GCTTCACGATACGG---GCCTGGCCTTTGACGGATCTCCAGCTCAGTTGT 1531
..||||..| |.|| || |||.|.|.|.|||.|.||...|||.||||
BL02650___yko 1455 ATTTCATCA-AGGGAAAGC--GGCATATCAAGGAACGCCGTATCAATTGT 1501
BSNT_02224 1532 TTTCT---CAAGAAACTGG------GCTTGTCCAAAAAGCAAAGCTCACC 1572
|.||| |||| |.|||| ||||.| ||..|.| |||
BL02650___yko 1502 TCTCTGACCAAG-ACCTGGTCCGCCGCTTTT--------CATTGAT-ACC 1541
BSNT_02224 1573 CTCCCCCTTCTATA----TAAATGGATGGCATATCAAGAGGAGGTG---- 1614
.||.||||..|| |..|||.|.| |.|..|||..|||| |
BL02650___yko 1542 --GCCGCTTCACTACCGGTTCATGCACG--AAAGAAAGGAGAGG-GTTCC 1586
BSNT_02224 1615 CGTGATGAAGCAGCCGTTACATCTCATTAA 1644
||| ||||
BL02650___yko 1587 CGT-ATGA---------------------- 1593
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