Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02226 and BL02648
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:44
# Commandline: needle
# -asequence dna-align/BSNT_02226___ykoE.1.5803.seq
# -bsequence dna-align/BL02648___ykoE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02226___ykoE-BL02648___ykoE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02226___ykoE-BL02648___ykoE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02226___ykoE
# 2: BL02648___ykoE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 713
# Identity: 370/713 (51.9%)
# Similarity: 370/713 (51.9%)
# Gaps: 226/713 (31.7%)
# Score: 750.5
#
#
#=======================================
BSNT_02226___ 1 ATGAAAAGCTGGAAAGTAAAAGAAATTGTCATCATGTCCGTTATCAGTAT 50
||||| .|||||..|.|||||| |||.|||||.|.||.||| .|.|
BL02648___yko 1 ATGAA---TTGGAACATGAAAGAA---GTCGTCATGACAGTCATC-TTGT 43
BSNT_02226___ 51 C----GTATTTGCCGTTGTTTATTTA---TTATTTACACATTTCGGAAAC 93
| |.||..|.|||..|||||||| |..|.| ||.||..|||..|
BL02648___yko 44 CTGTGGCATGCGGCGTCATTTATTTAGGGTGGTCT--ACCTTGTGGATCC 91
BSNT_02226___ 94 GTGCTTGCAGGTATGTTTGGGCCGATC---GCCTATGAACCGATTTA--- 137
.|| ||.|||.|||..|.|||||..|| || |||| ||||
BL02648___yko 92 CTG-TTTCAGCTATCGTCGGGCCCGTCGGAGC----GAAC---TTTATGT 133
BSNT_02226___ 138 -CGGCATTTGGTTTATCGTTTCTGTGATCGC------------CGCGTAC 174
||||||.||| |||||||| |||.||.
BL02648___yko 134 TCGGCATATGG------------GTGATCGCCAGCCCGATTGTCGCTTAT 171
BSNT_02226___ 175 ATGATTCGAAAACCGGGTGCGGCGCTCGTTTCTGAAA--TCA-TTGCCGC 221
||.||.||.|||||||||||||||||..||.|.||.| .|| .|||.||
BL02648___yko 172 ATCATCCGTAAACCGGGTGCGGCGCTGATTGCCGAGACGGCAGCTGCGGC 221
BSNT_02226___ 222 TCTCGTTGAGTGCCTGCTG---GGAAATCCGTCTGGCCCGATGG----TC 264
..||| ..|||||| || ||.||.|.| ||| ||
BL02648___yko 222 GGTCG------AACTGCTGACCGG-AAGCCATTT-------TGGGCTTTC 257
BSNT_02226___ 265 ATCGTCATTGGCAT-----TGTTCAAGG--GCTCGGGGCTGAGGCTGTGT 307
|.|.|.||| .|| |||||.||| || |||.||.||....|.||
BL02648___yko 258 AGCATTATT--AATCGGTGTGTTCCAGGGAGC-CGGTGCGGAAATCGCGT 304
BSNT_02226___ 308 T-----TCTT--GCAACA--CGCTGGAAAGCAT-ACTCTCTCCCTGT--- 344
| |||| ||.|.| |||| || ||| |||
BL02648___yko 305 TTGCGATCTTTCGCTATAAGCGCT-------ATAACT-------TGTTTA 340
BSNT_02226___ 345 -CCTTATGCTGGCCGGT------------ATGGGGTCTTCAGTAGC---- 377
|||||||||..||||| .||||| |||
BL02648___yko 341 CCCTTATGCTTTCCGGTGCGCTAGCCGCGGTGGGG--------AGCGCGA 382
BSNT_02226___ 378 ----CAGCTTTATCT-ATG---ATCTCTTTGTTTCTGGCTATGCAGCCTA 419
|||| || ||| |.| |.||.||.||| |||
BL02648___yko 383 CATACAGC-----CTGATGGCAAAC-----GGTTTTGCCTA------CTA 416
BSNT_02226___ 420 TTCACCAGGTTATCTGCTCATTAT----GCTTGTGATCCGTCTCATTTCC 465
| ||.|.|..|.| |||.| ||| ||||.|.||||...|||| |
BL02648___yko 417 T--ACGACGCAAAC-GCTGA-TATTGACGCTTATCATCCAAATCAT---C 459
BSNT_02226___ 466 GGCGCGCTT-----TTGGCGG--GGCTTCTCGG-AAAAGCTGTTAGCGAC 507
.||| ||.| |.||||| |||| || ||||||.|||..|||.
BL02648___yko 460 AGCG-GCATTGTACTCGGCGGCTGGCT----GGCAAAAGCCGTTGTCGAA 504
BSNT_02226___ 508 TCTCTCGCTTATACAGGTGTGTTAAACGGAATGGCACTCGGAAAGGAAC- 556
.|.||.||..|.||.||.||..|.||| ||.|..|| ||.|
BL02648___yko 505 GCGCTTGCGAAAACGGGAGTCCTGAAC-------CAGTATGA---GATCA 544
BSNT_02226___ 557 TGAAAAAGAAACGGAAGCGGG-------CGTCAGAACATGCAAGCCTTT- 598
|||||.|..|.||||||..|| || ||||...|.|||
BL02648___yko 545 TGAAAGAACACCGGAAGAAGGATGATGCCG-------ATGCGTTCATTTC 587
BSNT_02226___ 599 ---GA-------- 600
||
BL02648___yko 588 TCGGATGCAGTAA 600
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