Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05502 and BL02637

See Amino acid alignment / Visit BSNT_05502 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:38
# Commandline: needle
#    -asequence dna-align/BSNT_05502___ywrF.1.5803.seq
#    -bsequence dna-align/BL02637___ywrF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05502___ywrF-BL02637___ywrF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05502___ywrF-BL02637___ywrF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05502___ywrF
# 2: BL02637___ywrF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 731
# Identity:     379/731 (51.8%)
# Similarity:   379/731 (51.8%)
# Gaps:         235/731 (32.1%)
# Score: 848.0
# 
#
#=======================================

BSNT_05502___      1 ---ATGTACATATTTCAAGCTGATCAGCTTAGTGCCAAAGAC--------     39
                        .|||.|||         |||||.|||||    ||||.||        
BL02637___ywr      1 ATGCTGTCCAT---------TGATCCGCTTA----CAAAAACGGAAAGAG     37

BSNT_05502___     40 ---ACATACAAGCTATT-GTCAG--GTACCGTTATTCCCCGCCCCATTGC     83
                        || ||||||.|.|| .||.|  |||   |.||.||..|.|||.|.||
BL02637___ywr     38 AGAAC-TACAAGTTTTTAATCGGGAGTA---TCATACCAAGACCCGTGGC     83

BSNT_05502___     84 ATTTGTGACAACACTTTCTTCAGAAGGAGCG-GTC---AATGCCGCGCCT    129
                     .|||||.||||..||   .|||| |||||.| |||   ||.|..||.||.
BL02637___ywr     84 GTTTGTTACAAGCCT---GTCAG-AGGAGGGCGTCTTAAACGGAGCTCCA    129

BSNT_05502___    130 TTCAGTTTTTATAACGTCGTCAGC-TCAGATCCTCCGCT--TCTCAGTAT    176
                     ||.||||.||.|||..|.|| |.| |||.|||||||..|  ||||     
BL02637___ywr    130 TTTAGTTATTTTAATATTGT-ATCTTCAAATCCTCCCATGATCTC-----    173

BSNT_05502___    177 TTCTGTTAACAGGACG----GAAGGACGCCAAAAAGATACAGCGCGAAAC    222
                      .||||..|.|..|||    |||||..|||||||||||||||||.|||||
BL02637___ywr    174 -CCTGTCCATACAACGTTCTGAAGGGAGCCAAAAAGATACAGCGAGAAAC    222

BSNT_05502___    223 GCAGTGGAGAACGGAGAATTTGTCGTTCATGTCAGTGATGAAGCCATCA-    271
                     ....||.|||.|..|||||||||.||.|||.||..|||||||  ||..| 
BL02637___ywr    223 ATTCTGAAGAGCAAAGAATTTGTGGTCCATATCGTTGATGAA--CAAAAT    270

BSNT_05502___    272 -TTGAAGATATCAATGAAACAGCTGCAAGCTT------AAGGCCGGATGA    314
                      |||||.|..|.||||.|||.||.||.|||.|      |||.|....|||
BL02637___ywr    271 GTTGAAAAAGTGAATGCAACGGCCGCGAGCCTACCTCCAAGTCAAAGTGA    320

BSNT_05502___    315 A--------AGC-GAGCTTACACGCACCTCGCTTCATCCTGTTGAAAG--    353
                     |        ||| ||| |||     |||         ||.||||||||  
BL02637___ywr    321 AATTCAGTTAGCGGAG-TTA-----ACC---------CCGGTTGAAAGTG    355

BSNT_05502___    354 -CAAAGCTGTTTCAGTTCCCGGCATTAAGGAAGC------CCGC------    390
                      .|||   ||.||.||.||.||..||||.|||||      .|||      
BL02637___ywr    356 TGAAA---GTCTCGGTACCGGGGGTTAAAGAAGCGAAAGTGCGCATGGAA    402

BSNT_05502___    391 ---GTTCGCTTTGAGTGCAAATTAGAGCGGCATATTACCTTTGACAATGA    437
                        ||||   |.||||....|||||||             |||..|  ||
BL02637___ywr    403 TGTGTTC---TGGAGTATTCATTAGAG-------------TTGGGA--GA    434

BSNT_05502___    438 TCAAGGCATCACTACAGCAGATCTGCTCATCGGAAGGGTTGTCTGC---T    484
                     |.||     ||||            ||| .|||         ||||   |
BL02637___ywr    435 TAAA-----CACT------------CTC-CCGG---------CTGCGATT    457

BSNT_05502___    485 TCCACCTAGATGAAAAGGT-----------GTATGAT----------GCA    513
                     ||       ||| |.||||           .|||.||          |||
BL02637___ywr    458 TC-------ATG-ATAGGTCAAGTCGTTCAATATCATATCGAGAGCGGCA    499

BSNT_05502___    514 -----GAAAAGGGATATATTTTAACGGAT--GAATTAAAACCT----GCC    552
                          |||||.|||.|.|||      |||  ||   .|..|||    |||
BL02637___ywr    500 TTTATGAAAATGGAAAAATT------GATCCGA---GAGGCCTCGGAGCC    540

BSNT_05502___    553 -TCA--CGATTGGCGGGAAATCACTATGCCAAGCTGGGGGAAGAATTCAC    599
                      |||  ||||||||.||..||.|.||.||.|||.|.||.|||        
BL02637___ywr    541 ATCAGCCGATTGGCCGGGCATGATTACGCAAAGATTGGTGAA--------    582

BSNT_05502___    600 ACTGATTCGTCCCAG-------CTGA-----    618
                         ||...|.||||       |.||     
BL02637___ywr    583 ----ATCTTTACCAGGGAAAGACCGAAGTAA    609


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