Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05502 and BL02637
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:38
# Commandline: needle
# -asequence dna-align/BSNT_05502___ywrF.1.5803.seq
# -bsequence dna-align/BL02637___ywrF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05502___ywrF-BL02637___ywrF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05502___ywrF-BL02637___ywrF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05502___ywrF
# 2: BL02637___ywrF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 731
# Identity: 379/731 (51.8%)
# Similarity: 379/731 (51.8%)
# Gaps: 235/731 (32.1%)
# Score: 848.0
#
#
#=======================================
BSNT_05502___ 1 ---ATGTACATATTTCAAGCTGATCAGCTTAGTGCCAAAGAC-------- 39
.|||.||| |||||.||||| ||||.||
BL02637___ywr 1 ATGCTGTCCAT---------TGATCCGCTTA----CAAAAACGGAAAGAG 37
BSNT_05502___ 40 ---ACATACAAGCTATT-GTCAG--GTACCGTTATTCCCCGCCCCATTGC 83
|| ||||||.|.|| .||.| ||| |.||.||..|.|||.|.||
BL02637___ywr 38 AGAAC-TACAAGTTTTTAATCGGGAGTA---TCATACCAAGACCCGTGGC 83
BSNT_05502___ 84 ATTTGTGACAACACTTTCTTCAGAAGGAGCG-GTC---AATGCCGCGCCT 129
.|||||.||||..|| .|||| |||||.| ||| ||.|..||.||.
BL02637___ywr 84 GTTTGTTACAAGCCT---GTCAG-AGGAGGGCGTCTTAAACGGAGCTCCA 129
BSNT_05502___ 130 TTCAGTTTTTATAACGTCGTCAGC-TCAGATCCTCCGCT--TCTCAGTAT 176
||.||||.||.|||..|.|| |.| |||.|||||||..| ||||
BL02637___ywr 130 TTTAGTTATTTTAATATTGT-ATCTTCAAATCCTCCCATGATCTC----- 173
BSNT_05502___ 177 TTCTGTTAACAGGACG----GAAGGACGCCAAAAAGATACAGCGCGAAAC 222
.||||..|.|..||| |||||..|||||||||||||||||.|||||
BL02637___ywr 174 -CCTGTCCATACAACGTTCTGAAGGGAGCCAAAAAGATACAGCGAGAAAC 222
BSNT_05502___ 223 GCAGTGGAGAACGGAGAATTTGTCGTTCATGTCAGTGATGAAGCCATCA- 271
....||.|||.|..|||||||||.||.|||.||..||||||| ||..|
BL02637___ywr 223 ATTCTGAAGAGCAAAGAATTTGTGGTCCATATCGTTGATGAA--CAAAAT 270
BSNT_05502___ 272 -TTGAAGATATCAATGAAACAGCTGCAAGCTT------AAGGCCGGATGA 314
|||||.|..|.||||.|||.||.||.|||.| |||.|....|||
BL02637___ywr 271 GTTGAAAAAGTGAATGCAACGGCCGCGAGCCTACCTCCAAGTCAAAGTGA 320
BSNT_05502___ 315 A--------AGC-GAGCTTACACGCACCTCGCTTCATCCTGTTGAAAG-- 353
| ||| ||| ||| ||| ||.||||||||
BL02637___ywr 321 AATTCAGTTAGCGGAG-TTA-----ACC---------CCGGTTGAAAGTG 355
BSNT_05502___ 354 -CAAAGCTGTTTCAGTTCCCGGCATTAAGGAAGC------CCGC------ 390
.||| ||.||.||.||.||..||||.||||| .|||
BL02637___ywr 356 TGAAA---GTCTCGGTACCGGGGGTTAAAGAAGCGAAAGTGCGCATGGAA 402
BSNT_05502___ 391 ---GTTCGCTTTGAGTGCAAATTAGAGCGGCATATTACCTTTGACAATGA 437
|||| |.||||....||||||| |||..| ||
BL02637___ywr 403 TGTGTTC---TGGAGTATTCATTAGAG-------------TTGGGA--GA 434
BSNT_05502___ 438 TCAAGGCATCACTACAGCAGATCTGCTCATCGGAAGGGTTGTCTGC---T 484
|.|| |||| ||| .||| |||| |
BL02637___ywr 435 TAAA-----CACT------------CTC-CCGG---------CTGCGATT 457
BSNT_05502___ 485 TCCACCTAGATGAAAAGGT-----------GTATGAT----------GCA 513
|| ||| |.|||| .|||.|| |||
BL02637___ywr 458 TC-------ATG-ATAGGTCAAGTCGTTCAATATCATATCGAGAGCGGCA 499
BSNT_05502___ 514 -----GAAAAGGGATATATTTTAACGGAT--GAATTAAAACCT----GCC 552
|||||.|||.|.||| ||| || .|..||| |||
BL02637___ywr 500 TTTATGAAAATGGAAAAATT------GATCCGA---GAGGCCTCGGAGCC 540
BSNT_05502___ 553 -TCA--CGATTGGCGGGAAATCACTATGCCAAGCTGGGGGAAGAATTCAC 599
||| ||||||||.||..||.|.||.||.|||.|.||.|||
BL02637___ywr 541 ATCAGCCGATTGGCCGGGCATGATTACGCAAAGATTGGTGAA-------- 582
BSNT_05502___ 600 ACTGATTCGTCCCAG-------CTGA----- 618
||...|.|||| |.||
BL02637___ywr 583 ----ATCTTTACCAGGGAAAGACCGAAGTAA 609
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