Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04686 and BL02618
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:50
# Commandline: needle
# -asequence dna-align/BSNT_04686___yueC.1.5803.seq
# -bsequence dna-align/BL02618___yueC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04686___yueC-BL02618___yueC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04686___yueC-BL02618___yueC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04686___yueC
# 2: BL02618___yueC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 546
# Identity: 288/546 (52.7%)
# Similarity: 288/546 (52.7%)
# Gaps: 168/546 (30.8%)
# Score: 669.5
#
#
#=======================================
BSNT_04686___ 1 ATGGAAAAGGGGATCATGATTTGTATGCTCTCCTTTTCCCTTTTCATACC 50
|||||||||||.|..|||||||
BL02618___yue 1 ------------------------ATGCTCTCCTTCTTTCTTTTCA---- 22
BSNT_04686___ 51 CTCTGCAGCGGCTGCCCAAA--CTGAAGAAA---ATACA---GATGTCGC 92
|||.| |.|| |.|| |.||.|||| |||.| |||||...
BL02618___yue 23 CTCCG-ATCG------CGAAGGCGGAGGAAACCGATAAAGTCGATGTAAA 65
BSNT_04686___ 93 GCCAAACCAGTATGAGAAAAAAGACATCGAAATCGATACGAATTATTTGC 142
|||||||.||||.||.||..|.||.||..|||||||.|||.|.||..|.|
BL02618___yue 66 GCCAAACGAGTACGAAAAGCAGGATATTAAAATCGAGACGGACTACCTTC 115
BSNT_04686___ 143 ATGAAGA--------TACCTACTATGAAGAAAAAACAGAACTGCCTGAGG 184
|.||||| .| |||.|.||.||||.|.| |.|.||.||.|
BL02618___yue 116 AGGAAGAAGAGGCGGAA--TACAAAGAGGAAATATC---AATTCCAGAAG 160
BSNT_04686___ 185 AACAAAAGGATATCACTTTT---GATAAACCGAAGGACAAG--GACGC-- 227
|||..|||||..||.|.||| ||| .|||| |.||| ||.||
BL02618___yue 161 AACTGAAGGAATTCTCATTTACAGAT---TCGAA--AAAAGAAGATGCTA 205
BSNT_04686___ 228 -CG---AGCTGATAA----------AAGATTTGTTTAC--ATCAACA--A 259
|| ||||||.|| ||| .||.|| ||.|| | |
BL02618___yue 206 TCGAAAAGCTGAAAAGCCTGTCCGGAAG----CTTCACGAATGAA-AGCA 250
BSNT_04686___ 260 ATGCCGAGGATTCCAACACGATTGCGGCCCAGTCGAAA-CAGCTTGGAAT 308
||.|||.||.|||.|| .|.||| |||||||
BL02618___yue 251 ATTCCGTGGCTTCAAA----------------GCTAAAGCAGCTTG---- 280
BSNT_04686___ 309 TACTTTTGCTGAAAAACCAAT---GACAAAGACATCATCAACGGAAACAG 355
||.|.| ||.| |.||||..|.||.|.|.|||.||..|
BL02618___yue 281 -ACCTGT----------CATTCTCGGCAAATCCGTCCTTATCGGGAAGGG 319
BSNT_04686___ 356 AAGATG-----------AACAAGAAA--CATCATCATTGCTGCTGCCGAT 392
|||||| |||..|.|| ||||.|| |||||.||
BL02618___yue 320 AAGATGACTCTGCGGAAAACCGGCAATCCATCTTC-------CTGCCCAT 362
BSNT_04686___ 393 GATCTAT---GTCGTACTGATCCTGCTCGGAATTGCAGGCATCGTGTTC- 438
||||| ||| |.||||||||.||..|.||.||.|| || |||||
BL02618___yue 363 --TCTATACGGTC-TGCTGATCCTTCTTTGCATCGCCGG--TC-TGTTCT 406
BSNT_04686___ 439 --CTCATCCCAAAAGTCACAGCGCAG--GAAAACAAGAAGGCGTAG 480
.|.||.||.|||||||..|.|||| ||||| ||.||
BL02618___yue 407 TTTTGATTCCGAAAGTCAGCGGGCAGCAGAAAA-AATAA------- 444
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