Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04685 and BL02617
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:50
# Commandline: needle
# -asequence dna-align/BSNT_04685___yueD.1.5803.seq
# -bsequence dna-align/BL02617___yueD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04685___yueD-BL02617___yueD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04685___yueD-BL02617___yueD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04685___yueD
# 2: BL02617___yueD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 789
# Identity: 513/789 (65.0%)
# Similarity: 513/789 (65.0%)
# Gaps: 114/789 (14.4%)
# Score: 1622.5
#
#
#=======================================
BSNT_04685___ 1 ATGGAACTTTAT--ATCATCACCGGAGCGTCAAAAGGGCTGGGTCAAGCC 48
|||.| ||||| ||..|.||||||||||||||||||||.||....||.
BL02617___yue 1 ATGCA--TTTATCCATTGTTACCGGAGCGTCAAAAGGGCTTGGCGCCGCG 48
BSNT_04685___ 49 ATTGCATTACAGGCTTTAG-AAAAGGGGCATGAAGTCCATGCCTTATCCA 97
||.|| ..|..||||||.| ||||.||.|||...||.|||||..|.||.|
BL02617___yue 49 ATGGC-CGAAGGGCTTTTGCAAAAAGGCCATATTGTTCATGCTGTTTCAA 97
BSNT_04685___ 98 GAACGAAAACAGATGTCTCTCACAAAAAACTAACGCAGCATCAAATAGAC 147
|.||.||..|.|||.||..|||..|.|..||.|..|||||| .||.|
BL02617___yue 98 GGACCAAGTCTGATATCAGTCATGACAGGCTGATCCAGCAT----GAGGC 143
BSNT_04685___ 148 CTCATC-----AATCTCGAAGAAGCTGAA---------CAGCAATTTGAA 183
| .||| .|.||||..|||.|.||| |.|||||
BL02617___yue 144 C-GATCTGGCGCAGCTCGCCGAAACAGAAAAGTGGTTTCGGCAAT----- 187
BSNT_04685___ 184 ACATTGCTCTCATCCATCGATTC------AGATCGTTATTCTGGT---AT 224
||||| ||||| ||..|.|.|||.||.| ||
BL02617___yue 188 -------TCTCA------GATTCTGTCCAAGCCCATGATTTTGCTTCGAT 224
BSNT_04685___ 225 TACCCTTATTAATAACGCCGGAATGGTAACGCCGATCAAACGTGCCGGCG 274
.|||.|.||.|||||.||.||||||||.|||||||||||.||.|||||||
BL02617___yue 225 CACCTTGATCAATAATGCGGGAATGGTGACGCCGATCAAGCGCGCCGGCG 274
BSNT_04685___ 275 AAGCGTCTCTTGACGAGCTTCAGCGCCATTATCAGCTGAACCTGACTGCG 324
||||....|..||.||.||...||..||||||.|..||||..||...|||
BL02617___yue 275 AAGCTGAACCGGAAGAACTGAGGCTGCATTATGACTTGAATTTGTTAGCG 324
BSNT_04685___ 325 CCCGTGCTTTTGAGTCAGCTGTTTACAAAACGGTT--TGCTTCATACAGC 372
||.|||.|..|.||.|||||||||||.|||.||.| .|| ||||.|..
BL02617___yue 325 CCGGTGATGCTCAGCCAGCTGTTTACCAAATGGCTCAAGC--CATATAAA 372
BSNT_04685___ 373 GGCAAAAAGACGGTTGTCAACATTACTTCAGGAGCCGCCAAAAATCCATA 422
||||||||..||.|||||||.||..|.|||||.||.||||||||.||.||
BL02617___yue 373 GGCAAAAAATCGATTGTCAATATATCATCAGGCGCGGCCAAAAACCCTTA 422
BSNT_04685___ 423 TAAGGGATGGAGCGCGTATTGCAGTTCAAAAGCCGGGCTCGACATGTTTA 472
|||.||||||||.||.||.|||||.||||||||.||||||||.|||||.|
BL02617___yue 423 TAAAGGATGGAGTGCCTACTGCAGCTCAAAAGCGGGGCTCGATATGTTCA 472
BSNT_04685___ 473 CGAGGACATTCGGATTTGAACAGGAGGATGAAGAG-CTG--CCGGTGAAC 519
|||..||||||||.|||||||||||.||| ||| ||| ||||||||.
BL02617___yue 473 CGAAAACATTCGGCTTTGAACAGGAAGAT---GAGTCTGATCCGGTGAAG 519
BSNT_04685___ 520 ATGATTTCGTTCTCACCTGGAGTGATGGACACTGAGATGCAGGCCGTCAT 569
||||||||.|||||.||.||..|.|||||.||.|..|||||.|..||.||
BL02617___yue 520 ATGATTTCTTTCTCCCCCGGGATCATGGATACCGGCATGCAAGAGGTTAT 569
BSNT_04685___ 570 CCGTTCTTCATCGAAAAAGGATTTCCACCACATTGAACGATTCCGGAAAT 619
||||||.|||||||||||.|||||.||..|.|||||||||||| |||.
BL02617___yue 570 CCGTTCATCATCGAAAAAAGATTTTCATGAAATTGAACGATTC---AAAA 616
BSNT_04685___ 620 TAAATGAAACAG------------GAAG--CCTTCGCAGTCCGGACTT-T 654
...||.|||||| |||| ||| ||| |
BL02617___yue 617 CCTATCAAACAGAAGGAAAGCTGAGAAGCACCT------------CTTAT 654
BSNT_04685___ 655 ATTGCCGGCACGCTGCT-----TTCTTTACTAGAAAAAGGGAC------G 693
.|.|||||||..||||| |.||| |.||| .
BL02617___yue 655 GTGGCCGGCATTCTGCTCGACCTGCTT-----------GAGACCGACTTT 693
BSNT_04685___ 694 GAAAACGGCCGCATTTATGATATTAAAGAGTTTTTGTAG 732
|||||||||.|..|.|||||||||||||||||||||||.
BL02617___yue 694 GAAAACGGCAGAGTGTATGATATTAAAGAGTTTTTGTAA 732
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