Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04666 and BL02608
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:49
# Commandline: needle
# -asequence dna-align/BSNT_04666___comQ.1.5803.seq
# -bsequence dna-align/BL02608___comQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04666___comQ-BL02608___comQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04666___comQ-BL02608___comQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04666___comQ
# 2: BL02608___comQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 988
# Identity: 539/988 (54.6%)
# Similarity: 539/988 (54.6%)
# Gaps: 242/988 (24.5%)
# Score: 1297.0
#
#
#=======================================
BSNT_04666___ 1 ATGAAGGAGATTGTGGA---TGAAAATATTTTAAATGAGGACTTAAAAGT 47
|||||..|..||.|.|| || |.|||...||||.|||||||||...
BL02608___com 1 ATGAATCATTTTATAGACCTTG---AGATTCCCAATGCGGACTTAAATCG 47
BSNT_04666___ 48 GAAGCT-----CATTTCTTTTATCAAAGA--AAAAAAACAATTTTCATTT 90
||.||| |.||||| ||| .|||..||.|.||.|||||
BL02608___com 48 GACGCTGCACGCTTTTCT--------AGATGCAAAGGACCAGTTGCATTT 89
BSNT_04666___ 91 GCA--GAACTGGCTTATTACCATTA-CATAGCATTT-------------- 123
|| ||.||.||||.|||.||||| ||.|| |||
BL02608___com 90 -CAGCGAGCTTGCTTTTTATCATTACCAAAG--TTTCGGCGGCACGGACA 136
BSNT_04666___ 124 --GAT--GGAAAAAACGACAAAGCAATTGAGTTATTGGCGTCAGGTATAG 169
||| ||.|.|||| ..||||.| ||||.||.|
BL02608___com 137 CCGATGCGGCAGAAAC----------------CCTTGGAG-CAGGCATTG 169
BSNT_04666___ 170 AACTTTTAATTTTATCTGCG---GACATTTTTGACGATATTGAGGATAAG 216
||||.||.|||.| |||| ||.||.||.||.|||.|.||||||.|.
BL02608___com 170 AACTCTTGATTCT---TGCGTTTGATATATTCGATGATTTAGAGGATGAA 216
BSNT_04666___ 217 GACAATCTTCAGGCTTCTTGGATGAAATTAGATCCTTCTATAGCAACTAA 266
||||..|...|.|...|||||||||||.|..|.|.|||..|.||||..||
BL02608___com 217 GACAGCCCCGATGAACCTTGGATGAAAATCAACCGTTCAGTCGCAATGAA 266
BSNT_04666___ 267 CGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCT 316
.||.||.||.||.|||||||||.||||..|..||||.||.|||||.||.|
BL02608___com 267 TGCGGCGACTGCGCTTTATACAATAAGCATTAAAGTGATCGGTTCGGTGT 316
BSNT_04666___ 317 CAAATCATCCAAAAC------TTTT----AAGCCTTACTTTGCAATATTC 356
|.|| |.||| |||| |||| || .||.|||||.|
BL02608___com 317 CGAA------AGAACCGGTGTTTTTCGAAAAGC--TA--ATGGAATATAC 356
BSNT_04666___ 357 ACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAGCC---T 403
|||.|||||..|.||.|||||.||||..|||.|.| ..|||.||| .
BL02608___com 357 ACTTCAATCGATGCAGGGACAGCATGACGATCTCA--GCAACCGCCCTGC 404
BSNT_04666___ 404 CATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTG 453
|| |.|||...||||...||||.|||||.||.|.|||.||.||..|.|||
BL02608___com 405 CA-CTGAAGATGAGTGCCTTGACATGATCAAGCGTAAATCCGGGGCGCTG 453
BSNT_04666___ 454 GTAACATTGCCCAGTATTCTTGGTG-----TATATCTGGCAACTGGAGAA 498
..|.|.||||| ||.|.||.|| ||| .||.||.||.||..||
BL02608___com 454 ACAGCCTTGCC----ATGCGTGCTGGGAGCTAT-GCTTGCTACGGGCAAA 498
BSNT_04666___ 499 TATAATGAAACAGTTGAGGAGTATTCACGT--TATTTAGGTATAG--TCG 544
|.|.|....||.|||||..|||| |.|.| .|..|.||.||.| ||
BL02608___com 499 TTTGACCCGACGGTTGAAAAGTA--CGCCTACCAGCTGGGCATTGCTTC- 545
BSNT_04666___ 545 AGCAAATTGCAAATGATCACTATGGACTTTATTACCCTAACTATAATGAC 594
.|||||||.|||||||.|..|.|.|||||.|| ||||
BL02608___com 546 -ACAAATTGAAAATGATTATAAAGCACTTTTTT------------ATGA- 581
BSNT_04666___ 595 TTCAAAACTAGACAT----------------ACGCTTGCCTTCAATTATC 628
|||||||...||.|| ||||||||.| |.||||.
BL02608___com 582 TTCAAAAAGCGATATCGCCAAGAAAAAGCGGACGCTTGCGT--ATTTATA 629
BSNT_04666___ 629 TT----AAAAATAAATTTAACCAATCATCAATTGACTTATTAA----ATT 670
|| ||.| |||||||||||..|.||.|||||.||.|||| |||
BL02608___com 630 TTTGTCAAGA--AAATTTAACCAGCCGTCGATTGATTTGTTAAAAACATT 677
BSNT_04666___ 671 TTTATGCGCAAGAAA------ATCATAT----GATAAATAATTTGGAAGA 710
| |||| ||.|.|| ||||||.||.|...|.|.
BL02608___com 678 T----------GAAACTGAGGATAAAATTGCCGATAAAGAAATAAAATGC 717
BSNT_04666___ 711 TTTGAAGGGAAAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTA 760
|.|.|||.||||.|.||| |.|.||||.||.|..||.|||.||.||||||
BL02608___com 718 TATAAAGAGAAATTGAAG-GCAGCAGGCGTCACTCAGTATATGTATGTTA 766
BSNT_04666___ 761 TAAAAAATTTAGCAGTGGAAAATTTTAA----GGAATC------ATTCAA 800
|.||..|..|.||..|..|.||.||||| |||||| .|
BL02608___com 767 TGAATCAGCTCGCTATTCAGAAATTTAAGAAGGGAATCGGGGAGCT---- 812
BSNT_04666___ 801 AAAACTGAGATT-----AGATGAACAAAGAA------------------- 826
|||| || |.|||.|.||||||
BL02608___com 813 -----TGAG-TTGGGGGATATGGAGAAAGAACGTTTGATGTCTACCCTGC 856
BSNT_04666___ 827 AAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA 864
..||||| ||||||.
BL02608___com 857 TGAATAA----------CAATTAA-------------- 870
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