Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03890 and BL02583
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence dna-align/BSNT_03890___yrpB.1.5803.seq
# -bsequence dna-align/BL02583___yrpB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03890___yrpB-BL02583___yrpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03890___yrpB-BL02583___yrpB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03890___yrpB
# 2: BL02583___yrpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1147
# Identity: 693/1147 (60.4%)
# Similarity: 693/1147 (60.4%)
# Gaps: 194/1147 (16.9%)
# Score: 1856.5
#
#
#=======================================
BSNT_03890___ 1 ATGAATGAATTTATGAAGAA--GTTTTCCTTAACAAAACCGATTATTCAA 48
||||||.|.||.||| ||| ..|.||.||..||||.||..|..|.||.
BL02583___yrp 1 ATGAATCAGTTCATG--GAACGCCTCTCTTTGTCAAAGCCTGTGGTCCAG 48
BSNT_03890___ 49 GCTCCAATGGCTGGCGGTATTACAACGCCCCGACTTGCATCTGCAGTTTC 98
||.||.|||||.|||||....|||||.||..|.||.||..|.|| |
BL02583___yrp 49 GCGCCGATGGCGGGCGGGCCGACAACACCAAGGCTCGCCGCCGC-----C 93
BSNT_03890___ 99 GAATCAAGGTGC----TCTT-GGCAGCTTAGCATCGGGGTATCTTACGCC 143
|.||||...||| .||| ||||||.|.|||||.||.|||.|.|||||
BL02583___yrp 94 GTATCAGACTGCGGCGGCTTAGGCAGCCTTGCATCCGGCTATTTGACGCC 143
BSNT_03890___ 144 AGACCTGCTAGAACAACAGAT-----AAAAGAAATGTTTGAGCTGACA-- 186
.||..||||..|||||||||| |||.|||| .||||||||
BL02583___yrp 144 GGAAGTGCTTCAACAACAGATTCTGGAAACGAAA-----AAGCTGACATC 188
BSNT_03890___ 187 -----GACGCTCCTTTTCAAATTAATGTGTTTGTTCCGCTA----GGTCT 227
|| ||||||.|.||..|.||..|||||..| ||
BL02583___yrp 189 AGCCGGA-------TTTCAAGTCAACCTCTTCATTCCGGAAAAACGG--- 228
BSNT_03890___ 228 AGAGA-TGCCACC--AGAAGATCAGAT-TAAAAAGTGGAAAGAAAACATA 273
||.| .|.|||| .||||| || |.|||.||||.||||.||.|||
BL02583___yrp 229 -GAAACCGTCACCCGGGAAGA----ATATGAAAGGTGGCAAGAGAAGATA 273
BSNT_03890___ 274 CCGTTAGC----TAATCAAGTAAATCAATTCACATCTGT-AC-------- 310
||.||.|| |...| ||||| |.|| ||
BL02583___yrp 274 CCTTTGGCGCGGTCGGC-----------TTCAC--CCGTGACAGATGAGA 310
BSNT_03890___ 311 AAGAAGAGTGGGATGACTTCTATCAAAAAATTGATCTAATTTTAAAATAT 360
||.||||.|||||.||.||.||..|.|||||.||..|.|||.|.|| |.
BL02583___yrp 311 AACAAGATTGGGACGATTTTTACGAGAAAATAGAAATCATTCTCAA--AG 358
BSNT_03890___ 361 AAGG--TTAAGGC--TTGCTCATTCACTTTTGATCTGCCGCCTGAAGACG 406
|||| |.|..|| || |||||.||.||||..|..|||||.|..||.|
BL02583___yrp 359 AAGGAATCAGCGCCGTT--TCATTTACGTTTGGCCCTCCGCCGGCTGATG 406
BSNT_03890___ 407 CAGTAAAGGAGCT-AAAAACCGCTGGA---TGCTGTTTAATAGGAACCGC 452
|.||.|||||.|| ||||||| || |||||||||||.||.|||||
BL02583___yrp 407 CCGTCAAGGAACTGAAAAACC----GAAATTGCTGTTTAATGGGCACCGC 452
BSNT_03890___ 453 ---TTCAACAGTAGAAGAAGCATTGTTAATGGAAGAACGGGGAATGGATA 499
|| ||||.||||||||..||.|..|.|||||||.|||.||||||.
BL02583___yrp 453 CGTTT---CAGTTGAAGAAGCCGTGCTGCTTGAAGAACTGGGGATGGATG 499
BSNT_03890___ 500 TAGTAGTCCTTCAAGGAAGTGAAGCCGGTGGACATCGCGGAGCATTCTT- 548
|..|..|..||||||||||||||||.||.||.||..|.|||||.|||||
BL02583___yrp 500 TCATCATTGTTCAAGGAAGTGAAGCGGGCGGCCACAGGGGAGCCTTCTTG 549
BSNT_03890___ 549 ---ACCTTCCAAAGGTGAATCTGCCGTAGGTTTAATGGCTCTGATTCCAC 595
| |.||.||.||..||||.||.||.|..||||||.|.|||||.|
BL02583___yrp 550 AAAA----CGAAGGGAGAGCCTGCTGTCGGCTCGATGGCTTTAATTCCCC 595
BSNT_03890___ 596 AAGCAGCAGATGCACTGAG--CGTACCTGTCATAGCTGCTGGGGGAATGA 643
||||.|||||| || ||.| .||.||.||.||.||.||.||.||.||..
BL02583___yrp 596 AAGCGGCAGAT-CA-TGTGTCGGTTCCAGTTATCGCAGCGGGCGGCATTT 643
BSNT_03890___ 644 TAGACCATAGAGGAGTAAAAGCAGCTTTAACCCTTGGAGCCCAAGGCGTT 693
|.|||.|.|||||.||....||||||||..||||.||.||.||.||||||
BL02583___yrp 644 TTGACAAAAGAGGTGTTGCTGCAGCTTTTGCCCTCGGCGCACAGGGCGTT 693
BSNT_03890___ 694 CAAATCGGTTCTGCCTTTTTAATTTGTCACGAGAGTAA-CG---CACATC 739
|||||||||.|.||.|||||.|..|| ||| ||.|| || ||||.|
BL02583___yrp 694 CAAATCGGTACCGCTTTTTTGACGTG---CGA-AGAAAGCGGAACACACC 739
BSNT_03890___ 740 CAG--TACATAAACAGAAAATACTAGAAGCAAACGAAGCAGATACAAAGC 787
|.| ||| |||||.|||.|..|.|||||....|||.|.||.||||..|
BL02583___yrp 740 CTGCCTAC--AAACAAAAATTGTTCGAAGCGGTTGAAACCGACACAAGCC 787
BSNT_03890___ 788 TTACGACATTATTTTCAGGTAAAGAGGCCAGAGGAATCGTAAATAAATGG 837
|.||....||.||.||.||.||...|||.|||||.|||||.|||.|.|||
BL02583___yrp 788 TGACCCGTTTGTTCTCGGGGAAGCCGGCAAGAGGCATCGTCAATCAGTGG 837
BSNT_03890___ 838 ATGGAAGAAA---------AAGAA-CAGTTTGAGACACAAACCCTTCCGT 877
||||||||.| ||||| |.| ||.|.||.||.|
BL02583___yrp 838 ATGGAAGACAGACGCCAGGAAGAAGCTG----------AAGCGCTGCCTT 877
BSNT_03890___ 878 ACCCTTATCAAAATACACTAACGAAGGCAATGAGACAGCAGGCTTCACTT 927
|.|||...|||||.||.||.|||.|..|.||||||.|.|||||....|||
BL02583___yrp 878 ATCCTCTGCAAAACACGCTGACGCAACCGATGAGAAAACAGGCGAAGCTT 927
BSNT_03890___ 928 CA---AAATAACCATGATCAGATGTCTTTATGGGCAGGTCA-------AG 967
.| .|||| ..|||.|.|||||.||.|||||.||.|| .|
BL02583___yrp 928 GACGGGAATA---CGGATAACATGTCATTGTGGGCCGGACAGAGCGTGCG 974
BSNT_03890___ 968 GGATACGGTCATTGACTGAGGAAATTTCGGTTAAGCAGCTTTTAAATCAG 1017
||..||.||| |||.|||...||||.|||.||||..|..|||||
BL02583___yrp 975 GGCCACCGTC-------GAGCAAACGACGGTGAAGGAGCTGATGGATCAG 1017
BSNT_03890___ 1018 CTT-TGCCAAGAAGAT-------------------ATAAAAATATAG 1044
||| |||| .|..||| ||.||
BL02583___yrp 1018 CTTGTGCC-GGCCGATGTGCTATCTGATCATTTGAATTAA------- 1056
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