Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02246 and BL02575

See Amino acid alignment / Visit BSNT_02246 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:45
# Commandline: needle
#    -asequence dna-align/BSNT_02246___ykoQ.1.5803.seq
#    -bsequence dna-align/BL02575___ykoQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02246___ykoQ-BL02575___ykoQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02246___ykoQ-BL02575___ykoQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02246___ykoQ
# 2: BL02575___ykoQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 843
# Identity:     611/843 (72.5%)
# Similarity:   611/843 (72.5%)
# Gaps:          57/843 ( 6.8%)
# Score: 2165.0
# 
#
#=======================================

BSNT_02246___      1 TTGTTTACAATCTTACTTTCATTGGCCATACTCGTA---TTTGTGCCATT     47
                     .||||||..|||..|..||.||||   ||..||.||   .|..||||.||
BL02575___yko      1 ATGTTTATTATCGCATGTTTATTG---ATTATCTTAGGCCTCATGCCTTT     47

BSNT_02246___     48 TCTATATAAAGCGAACCGCAATACAAAAGATGTGAAAGTCAACACCATTT     97
                     |.|||||||||||||||.|||||||||||||||||||||||||||.||||
BL02575___yko     48 TTTATATAAAGCGAACCACAATACAAAAGATGTGAAAGTCAACACGATTT     97

BSNT_02246___     98 CAATCGACCAAAAAGACGGCCT------TCCAGC----CAGAAAAAAATT    137
                     |..||||.|         ||.|      |||.||    .|| |||||..|
BL02575___yko     98 CGGTCGAGC---------GCGTGCAGGCTCCCGCTTTAAAG-AAAAAGCT    137

BSNT_02246___    138 AAATATCCTTCATTTATCAGATCTTCACTTGGAAAACATTTCAGTCTCAC    187
                     .||.||.||||||.|.||.||||||||.||.|||||||||||..|.||||
BL02575___yko    138 GAACATTCTTCATCTGTCCGATCTTCATTTAGAAAACATTTCGATTTCAC    187

BSNT_02246___    188 CTGA--GGA-GCTGTATCATT-----TAACAAAAGATCAGCCTGTGGACA    229
                     ||||  ||| .||..|.| ||     |||.|||.||       |||||..
BL02575___yko    188 CTGAACGGATTCTTGAAC-TTGCCAATAAAAAACGA-------GTGGATC    229

BSNT_02246___    230 TCATTGCTCTTATC-GGGGATTTTCTTGATCGGAAACGTAATATTCCGAA    278
                     |||||||| |||.| ||.||||||||||||.||||..|.||||||||.||
BL02575___yko    230 TCATTGCT-TTAACAGGAGATTTTCTTGATAGGAAGAGAAATATTCCAAA    278

BSNT_02246___    279 GCTGGCAGGTTACTTGAACGCCTTGCAAAAGCTAAAGCCTGCATATGGAA    328
                     |||.|||...|||||.||.||.|||.||||.||.|||||.|||||.||.|
BL02575___yko    279 GCTTGCAAACTACTTAAAAGCTTTGAAAAAACTGAAGCCGGCATACGGGA    328

BSNT_02246___    329 TGTACGCGGTGTTCGGTAACCACGATTATGTATTGAAAGAAGAGGACTTT    378
                     |||||||.||.|||||.|||||.||.||..||||||||||.||..|||||
BL02575___yko    329 TGTACGCTGTATTCGGCAACCATGACTACCTATTGAAAGACGAACACTTT    378

BSNT_02246___    379 CAGAGATTGAAGCGAGTTTTAGAGGAAAACGGCTGTATCACGCTGCAAAA    428
                     |.||...||||.||.||..|.||.||.|||||.||.|||||.||.||.||
BL02575___yko    379 CGGAAGCTGAAACGTGTACTGGAAGATAACGGATGCATCACCCTACAGAA    428

BSNT_02246___    429 TGAACATGT-----TCGAATCGAGACGGCTGCAGGGCCAGTCAATATTAT    473
                     ..|.|||||     |.|||..| ||.|||    |.|.||.||||.|||||
BL02575___yko    429 CCAGCATGTCTCCATTGAAGTG-GAAGGC----GAGACACTCAACATTAT    473

BSNT_02246___    474 CGGCATTGATGATTACAGTACGAATCGGAGTAATATCACCGGCTCTTATC    523
                     |||.||||||||||||||.|||||.||.||..||||..||||.||.|||.
BL02575___yko    474 CGGGATTGATGATTACAGCACGAAGCGAAGCGATATTGCCGGTTCATATA    523

BSNT_02246___    524 AAAGTCTGGAAAATGGCTATTATCTTGTCTTAACACATGACCCAAATATT    573
                     ||.|.||..||.|.|||||..|.|||||.||.||.|||||.||.||..||
BL02575___yko    524 AAGGGCTTAAAGAGGGCTACAACCTTGTATTGACGCATGATCCGAACGTT    573

BSNT_02246___    574 ATTCTGGATATGAAGGATGTTCATTATGATTACCTGCTGTCAGGGCATTT    623
                     .|.||.||||||.||||..||||.|.|||.||.||.||.|||||.|||||
BL02575___yko    574 GTGCTTGATATGCAGGAATTTCACTTTGACTATCTTCTTTCAGGACATTT    623

BSNT_02246___    624 TCACGGCGGGCAAATTCACTGGCCAAAACCGTATCATTTGGTGAAAATGG    673
                     |||||||||.||.|||||.|||||.||.||.||||||.|.|||||.||||
BL02575___yko    624 TCACGGCGGTCAGATTCATTGGCCGAAGCCTTATCATCTCGTGAAGATGG    673

BSNT_02246___    674 GAAACCTCGTGCGAATGAACATGATTAAAGGCCTTCATTATCATCACGAT    723
                     ||||.||.|||||||||||.|||||.|||||.|||||.||.|||||.||.
BL02575___yko    674 GAAAGCTTGTGCGAATGAATATGATAAAAGGTCTTCACTACCATCATGAC    723

BSNT_02246___    724 AAACCATTTTATATCAGCGAGGGCTTGGGACAAACCGGCGTAAATATCCG    773
                     |||||.|||||||||||||||||.|||||.||.||.||.|..||.|||||
BL02575___yko    724 AAACCGTTTTATATCAGCGAGGGATTGGGTCAGACTGGGGCGAACATCCG    773

BSNT_02246___    774 TGTCGGAAGCCGTCCTGAAGTGACGTTTCATCAGAT---ATAA    813
                     ..|||||||||||||.|||.|||||||.|||||.||   ||||
BL02575___yko    774 AATCGGAAGCCGTCCGGAAATGACGTTCCATCACATTTCATAA    816


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02246 and BL02575

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
