Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02244 and BL02574
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_02244___ykoN.1.5803.seq
# -bsequence dna-align/BL02574___ykoN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02244___ykoN-BL02574___ykoN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02244___ykoN-BL02574___ykoN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02244___ykoN
# 2: BL02574___ykoN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1216
# Identity: 763/1216 (62.7%)
# Similarity: 763/1216 (62.7%)
# Gaps: 176/1216 (14.5%)
# Score: 2238.0
#
#
#=======================================
BSNT_02244___ 1 ATGAAAAACATTCTCATTTTTCCTTTTTTAAGCATTTCCACCGGCCATCA 50
||||.|||.|||||.|||||.|||||||||||||||||||||||.|||||
BL02574___yko 1 ATGACAAAGATTCTGATTTTCCCTTTTTTAAGCATTTCCACCGGTCATCA 50
BSNT_02244___ 51 TCATGTGGCTGATGCATTGCAGGCTGAATTAGAGTCTCAAGGGCTGGCAG 100
|||.||.||.|||.|..|||||.|.|||.| |...||||| .|..||.
BL02574___yko 51 TCACGTTGCCGATTCGCTGCAGACAGAACT-GCTCCTCAA---ATCCCAT 96
BSNT_02244___ 101 C----TGAAAAGATTGATATCTTTTCACATGCGTATAGCCGTTTAGAAAA 146
| ||||||.||.||.||.|||||||||||.|||.|.||..|.|||||
BL02574___yko 97 CACTGTGAAAAAATCGACATTTTTTCACATGCTTATCGGCGGCTGGAAAA 146
BSNT_02244___ 147 ATTGTCCTCCGTGGCTTATTTAAAATGGATTCAATATTTCCCGAAAACGT 196
....|||||.|.|||.|||||...|||||||||.|||||.||||||...|
BL02574___yko 147 GGCCTCCTCTGCGGCATATTTGTCATGGATTCAGTATTTTCCGAAAGTCT 196
BSNT_02244___ 197 ACAG--CGG-----CATTTACAGGCTCCTCGCCTGCGGAGAATTTCAGCA 239
|||| ||| ||| |||||.||.||||| .|..||
BL02574___yko 197 ACAGCTCGGTCTATCAT-------CTCCTGGCGTGCGG------GCGCCA 233
BSNT_02244___ 240 TGA-----CAAA-CGCTTTTTCATGTACGAATGGCTGTT----------- 272
||| |||| |||....||.||||.|| ||||.|
BL02574___yko 234 TGAAACGGCAAAGCGCCACCTCTTGTATGA---GCTGATCTTTTTGAAAG 280
BSNT_02244___ 273 -CACACAGCAAATGA-GGCACATCCTCCAAGAAAAACAGCCTGATATCGC 320
||..|||||.||.| .|| |||||||.||||||||||||.
BL02574___yko 281 GCATGCAGCAGATTATTGC----------AGAAAAAAAGCCTGATATCGT 320
BSNT_02244___ 321 CTTCTGCACACATGCGCTGCCTTCTTATCTGCTGAACCGACTAAA--GCC 368
.|||||.||.|||||..||||.||.|||.||||||||||..|||| |||
BL02574___yko 321 GTTCTGTACGCATGCATTGCCCTCCTATTTGCTGAACCGCTTAAAAGGCC 370
BSNT_02244___ 369 TGAATATCCGAATCTGACGGTTGTGAATGTATACACTGATTTTTTCGTGA 418
|||.|||..|..|||..||.|..||||||||.||.|||||||||||.|
BL02574___yko 371 --AATTTCCCGACATGAAAGTGGCCAATGTATATACCGATTTTTTCGTCA 418
BSNT_02244___ 419 ATCAATTATGGGGACGGAAGAACATTGATTACCATTTTGTTCCGAGCACG 468
|.|.|.|.||||||.|..||||.||||||||.|||||.|..||||.||..
BL02574___yko 419 ACCGAATCTGGGGAAGAGAGAAGATTGATTATCATTTCGCGCCGATCAAA 468
BSNT_02244___ 469 GA-AGTAAAGAAGCAGCTAATATCAGAGGGGATCGATCAGAACAACATAT 517
|| |..|||| |.|||||.||..||||.||..|.|||.|..|.||.||.|
BL02574___yko 469 GACATCAAAG-ACCAGCTGATCGCAGAAGGCGTTGATGAAGAGAAAATTT 517
BSNT_02244___ 518 ACTTGACCGGTATTCCAGTTCACCGAAATTT----TGAAATGGAATCAGC 563
...|||||||.||.||.||.||||| || |.|||.||| .
BL02574___yko 518 TTCTGACCGGAATACCTGTGCACCG----TTCCTATAAAACGGA-----G 558
BSNT_02244___ 564 AGATACCTTGCAGCACCAC------------CCGCCATATACCATCATCA 601
|||.|.|.|| ||||..|| .||...|..|.||||.|||
BL02574___yko 559 AGAAAGCCTG-AGCAGGACGGGGACAAAAAAGCGTTTTGCAACATCCTCA 607
BSNT_02244___ 602 TCACAGGGGGCAGTATGGGGGTCGGTGGGATTTTAAAATGGGTGCAGGAA 651
|.||.||.||.||.||||||||.||.||.|||||.|||...||||.||||
BL02574___yko 608 TAACCGGCGGAAGCATGGGGGTGGGCGGCATTTTTAAACTCGTGCGGGAA 657
BSNT_02244___ 652 CTGTCGCCAGGCGGAAAGATCTTATACAAAATATTATGCGGCAGAAACGA 701
||||||||...|||.||..||..||||.|||||.|||||||.|.||||..
BL02574___yko 658 CTGTCGCCGAACGGGAATGTCGCATACCAAATACTATGCGGAAAAAACCG 707
BSNT_02244___ 702 AAAGCTCTACTCCTATG-TCAAAAGTTTACACCACCCCTTGATTGAGGCG 750
||||||||||...|||| ||...| ||||.||.|.||.|..|||.|.|||
BL02574___yko 708 AAAGCTCTACCGGTATGTTCGTGA-TTTAAACAATCCATATATTAAAGCG 756
BSNT_02244___ 751 ATTCCTTACCTTCACAGCAAAGCAGAGATGAACCGTTTGTACGAACAGTC 800
.|.|||||..|..|.|||||..|.||.||||||||.||.||||...||.|
BL02574___yko 757 CTGCCTTATATCGAAAGCAAGACTGAAATGAACCGCTTATACGCGGAGGC 806
BSNT_02244___ 801 GACAGGCATCATGACTAAACCCGGAGGCGTGACCATCAGTGAATGCTTAC 850
|.|.|||||.||.||.||.|||||.|||||.||.|||||.||.|||.|..
BL02574___yko 807 GTCGGGCATTATTACGAAGCCCGGCGGCGTCACGATCAGCGAGTGCATTG 856
BSNT_02244___ 851 AGAAACGGCTTCCGGTATTTATTTATCATGCACTGCCGGGACAGGAGGAA 900
|.||||.|||.||.||.||.||.||||||||.|||||.||||||||.||.
BL02574___yko 857 AAAAACAGCTCCCTGTTTTCATCTATCATGCGCTGCCCGGACAGGAAGAG 906
BSNT_02244___ 901 ATGAATTTAAACCTTCTACATG-AAAAGAAA---CTCGTCACAGATATGA 946
||||||.|..|..||| || |||||||| ||.||||..|
BL02574___yko 907 ATGAATCTCGATATTC----TGAAAAAGAAAAACCTTGTCATCG------ 946
BSNT_02244___ 947 GAAACTGGGACATGCAGAA--AGCA-------GAAGAGTATATCGCGG-- 985
|||||...|| |||.|| |||| |||.||.| ||.|
BL02574___yko 947 --AACTGAATCA-GCAAAAACAGCAGCCGATTGAACAGCA----GCTGCT 989
BSNT_02244___ 986 --CATTTTTTCAATCGAACGAACAGATGAAGGAG-TATAAAAAACACGTC 1032
|.|||||.|..|||.|.|||.|.|| .|||.| |||.|||....||||
BL02574___yko 990 TTCCTTTTTCCGTTCGGATGAAGACAT-CAGGCGCTATCAAATGAGCGTC 1038
BSNT_02244___ 1033 ATTGGATACCTTG-GCGAAATGTCTGATAGGAAGATTGAA--GATGTTTT 1079
..|..||| .||| ||||||..||.||..| .||||..| |||.||||
BL02574___yko 1039 GATCAATA-TTTGCGCGAAAAATCGGACCG--TGATTTCAGCGATATTTT 1085
BSNT_02244___ 1080 AAAAAGAATCA------------------TATGGAA-----ACAAAAAAA 1106
|.|..|.|||| ||.|||| ||..|.||
BL02574___yko 1086 AGACGGGATCATTCATAACCGGAGCGGTTTAGGGAATGCTCACGTATAA- 1134
BSNT_02244___ 1107 CACTCTCCTGAAATAG 1122
BL02574___yko 1134 ---------------- 1134
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