Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04563 and BL02562
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:43
# Commandline: needle
# -asequence dna-align/BSNT_04563___yuaD.1.5803.seq
# -bsequence dna-align/BL02562___yuaD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04563___yuaD-BL02562___yuaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04563___yuaD-BL02562___yuaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04563___yuaD
# 2: BL02562___yuaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 628
# Identity: 400/628 (63.7%)
# Similarity: 400/628 (63.7%)
# Gaps: 95/628 (15.1%)
# Score: 1223.0
#
#
#=======================================
BSNT_04563___ 1 ATGTGGAAGCGGATGACTGCAAAAGCGGAAGGCT-------------TAT 37
||||||||| |||||.|.|||| |||
BL02562___yua 1 ATGTGGAAG-------------AAGCGCACGGCTGTGGCGGAGCACGTAT 37
BSNT_04563___ 38 ATATCGCAGAAACAGAAAGC----TTCGTAACAAAGCAAATGGACAAGCT 83
|.||.||.||.|| ||| ||.||.|||.||.||..||..|||.|
BL02562___yua 38 ACATAGCGGACAC----AGCGTCATTTGTGACAGAGAAACAGGCAAAGAT 83
BSNT_04563___ 84 TGATTTTGATTATGGCGGCATCCCCGGCGACTTGCATTTTGGCCTGACCA 133
.|...|.|||||.||.|||||.||.||.||..||||||||||.|||||.|
BL02562___yua 84 CGTAATCGATTACGGGGGCATACCGGGGGATCTGCATTTTGGACTGACGA 133
BSNT_04563___ 134 AAAAAGCGGGAGCCAGAGAACCAATGTTTTCAAGAGGGACTGAAATTTTC 183
|||||||.||.||.||.||.||.||||.|..||||||.||.||.||||||
BL02562___yua 134 AAAAAGCCGGGGCAAGGGAGCCGATGTATAAAAGAGGAACGGAGATTTTC 183
BSNT_04563___ 184 AACCGCAGACAAATTTCAATTGTTTCAATAGAGGAATGCAACGAAATCGC 233
|||.|.||.||.|||||.||.||.||..||||.||.|||...|||||.||
BL02562___yua 184 AACAGGAGGCAGATTTCTATCGTCTCGGTAGAAGAGTGCCTTGAAATTGC 233
BSNT_04563___ 234 TTTAAAAATGGGAGTGCCGAGAATT----------TTGCCGGAATGGCTC 273
.|||..||.||..||| || ||||||||||||
BL02562___yua 234 ---------CGGACGGCTGAACATTCCGGCGGTCCTT-CCGGAATGGCTC 273
BSNT_04563___ 274 GGGGCGAATGTGGCAGTCAGCGGTATGCCAGATCTTACTTCATTAAAAGA 323
|||||.|||.|.|||.|.|||||..||||.|||.|.||.|||||||.|||
BL02562___yua 274 GGGGCCAATATCGCATTAAGCGGCCTGCCTGATTTAACCTCATTAAGAGA 323
BSNT_04563___ 324 AGGAAGCCGGATTATTTTTCCGAGCGGAGCGGCTCTGCTGTGTGAGGGCG 373
|||||||.|.||..|||||||.|||||.||..||.||.||.|.|||||||
BL02562___yua 324 AGGAAGCAGAATCGTTTTTCCAAGCGGCGCCTCTTTGTTGAGCGAGGGCG 373
BSNT_04563___ 374 AAAATGATCCGTGTATCCAGCCGGGAGAAGTCATTCAGTCCTATTATCCG 423
|.|||||.|||||.||.|||||.|||||||||||||||....|.|.|||.
BL02562___yua 374 AGAATGAGCCGTGCATTCAGCCCGGAGAAGTCATTCAGGAGCAGTTTCCC 423
BSNT_04563___ 424 GACAAGCCGAAGCTGACGCCG-GCTTTCGTCCGCCACGCACTGGGCATTA 472
|||||.||||||||..|..|| ||||| ||.|||||.||..||||.|..|
BL02562___yua 424 GACAAACCGAAGCTTGCTTCGCGCTTT-GTGCGCCATGCGATGGGAAGAA 472
BSNT_04563___ 473 GAGGGATTGTCTGTATTGTGGAGAGACCTGGTGCTGTT---TACACAGGT 519
|.||.||.|||||.||.||.|| |..||.||..|||.| | || |||.
BL02562___yua 473 GGGGAATCGTCTGCATCGTTGA-ACGCCCGGGCCTGATCCAT-CA-AGGC 519
BSNT_04563___ 520 GATGAAATAGAAGT-------TCATT--CCTATCAGCGA--AAAGTCAAA 558
||..||..|||||| | ||| ||| .|.||.| |||| |
BL02562___yua 520 GACCAAGCAGAAGTGTGGGCGT-ATTCGCCT-GCTGCCATGAAAG----A 563
BSNT_04563___ 559 CGAAAAGCAGAAAGGGTC---TGA---- 579
||..| |||| ||.
BL02562___yua 564 CGCCA---------GGTCGTTTGCCTAG 582
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