Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04628 and BL02531

See Amino acid alignment / Visit BSNT_04628 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:46
# Commandline: needle
#    -asequence dna-align/BSNT_04628___yugF.1.5803.seq
#    -bsequence dna-align/BL02531___yugF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04628___yugF-BL02531___yugF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04628___yugF-BL02531___yugF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04628___yugF
# 2: BL02531___yugF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 851
# Identity:     586/851 (68.9%)
# Similarity:   586/851 (68.9%)
# Gaps:          58/851 ( 6.8%)
# Score: 1887.5
# 
#
#=======================================

BSNT_04628___      1 ATGGAGGCGGTTTCACCAATAAGGCGGTTTACGGTCG---------ATGG     41
                         |.||.|||     ||.||..|..|.||   |||         |.||
BL02531___yug      1 ----ATGCTGTT-----AACAAAACCTTCTA---TCGAGACCATTCAAGG     38

BSNT_04628___     42 AGTCAATGTATACTACGAACATTATCAAAATCCCGGCAGGCAAACGCTGG     91
                     .||||||.||||.||.||||||||..|.|||||.||||.|..|.||||.|
BL02531___yug     39 GGTCAATATATATTATGAACATTACGAGAATCCAGGCAAGACATCGCTCG     88

BSNT_04628___     92 TCTGCGTACACGGTTTTTTATCATCTGCATTCAGCTTCAGAAAAGTAATT    141
                     |.|...|||||||||||.|.||.||..|.||..|||.|||||||.|.|||
BL02531___yug     89 TTTTAATACACGGTTTTCTTTCTTCCTCGTTTTGCTACAGAAAAATCATT    138

BSNT_04628___    142 CCTCTCCTTCGGGACAAGTACGACATCATCGCGCTTGATTTGCCTCCTTT    191
                     |||||.||...|||..|||...|..|..||||..||||..|||||||.||
BL02531___yug    139 CCTCTTCTGAAGGATGAGTTTAATTTAGTCGCCGTTGACCTGCCTCCCTT    188

BSNT_04628___    192 CGGCCAATCTGAAAAATCAAGAACGTTTATCTATACCTATCAAAACCTTG    241
                     |||||||||.||||||||.||.||.|||.|.|||||||||||||||.|.|
BL02531___yug    189 CGGCCAATCAGAAAAATCCAGCACCTTTGTGTATACCTATCAAAACATGG    238

BSNT_04628___    242 CTAAGCTTGTCATTGGGATTTTGGA---GCACTTGCAAG-TGAAACAGGC    287
                     |.|.|.|.|||||.|...|..|.||   ||   || ||| |.|||.|.||
BL02531___yug    239 CCAGGGTGGTCATCGAACTGATCGAAAGGC---TG-AAGATTAAAGACGC    284

BSNT_04628___    288 TGTGCTTGTCGGGCATTCTATGGGCGGGCAGATATCGCTGTCTGCTGCTC    337
                     .|||||||||||.|||||.||||||||.|||||.||.||.|.||| |.| 
BL02531___yug    285 CGTGCTTGTCGGTCATTCGATGGGCGGCCAGATTTCACTTTATGC-GAT-    332

BSNT_04628___    338 TCCAA---AAA--CCTGAGCTTTTTTCAAAGGTTGTGCTGCTTTGCAGTT    382
                        ||   |||  |||||.||.||...|||.||.||.|||||.|||||.|
BL02531___yug    333 ---AAAGGAAAGGCCTGAACTGTTCAAAAAAGTCGTCCTGCTGTGCAGCT    379

BSNT_04628___    383 CAGGGTATTTAAAACGTTCACACCCG-ACGATCATTTTCGGGACCCATAT    431
                     ||||.||||||||.|||||.| |||| .||.|.||||||||||.||||||
BL02531___yug    380 CAGGCTATTTAAAGCGTTCGC-CCCGCTCGCTTATTTTCGGGAGCCATAT    428

BSNT_04628___    432 CCCGTATTTTCATCTTTACATCAAACGCTGGCTCTCGAAAGAAGGCGTGA    481
                     .||.||||||.||.|.||||||||.||||||||.||.|||.|.|||||..
BL02531___yug    429 TCCTTATTTTTATTTGTACATCAAGCGCTGGCTGTCAAAACAGGGCGTCC    478

BSNT_04628___    482 TGAAAAATTTATTAAATGTGGTGCATGACAAATCGCTGATTGATGAGGAG    531
                     |||||||..|..|.|||||.||..|.||||..||.|||||.|||.||||.
BL02531___yug    479 TGAAAAACCTCATGAATGTTGTCTACGACAGCTCCCTGATCGATCAGGAA    528

BSNT_04628___    532 ATGATCGACGGCTA--TGGCAGACCATTTCAGGACGAGCAGATTTTCAAA    579
                     ||||||.|||||||  ||  |.|||.||||..||.||.||.|||||||..
BL02531___yug    529 ATGATCAACGGCTACCTG--AAACCGTTTCTCGATGATCAAATTTTCAGG    576

BSNT_04628___    580 GCCATGACAAGGTTTATCCGCCACAGAGAAGGAGATTTAGAACCCGAGCA    629
                     ||..|..||.|..|||||.|.|||.|.|||||.||||||..|||.||..|
BL02531___yug    577 GCGCTCGCACGTCTTATCAGACACCGGGAAGGCGATTTATCACCGGATGA    626

BSNT_04628___    630 ATTGAAGAAAATGAACAAGCCTGCTCTATTGATTTGGGGCGAGGAGGATC    679
                     .|||||||||||..|.|.||||.|.||.|||||.||||||||.|||||.|
BL02531___yug    627 TTTGAAGAAAATCGAGACGCCTTCCCTCTTGATCTGGGGCGAAGAGGACC    676

BSNT_04628___    680 GAATTGTCCCAATGGAGATCGGTAAACGGCTGCACGCA-GATTTGCCTAA    728
                     |..|.|||||..|..|||||||.|||.||||.|| .|| |||.||||.||
BL02531___yug    677 GCGTCGTCCCGGTACAGATCGGAAAAAGGCTTCA-TCAGGATCTGCCCAA    725

BSNT_04628___    729 TTCCGTGCTGTACTCACTTGGCCAG--ACCGGACATCTGGTGCCTGAAGA    776
                     ||||.|..|.|||||.||  ||.||  ||||||||.||.||.||||||||
BL02531___yug    726 TTCCATTTTCTACTCCCT--GCAAGAAACCGGACACCTCGTCCCTGAAGA    773

BSNT_04628___    777 ACGGCCTGAACTTGTTTCTGAACACATTGCTGATTTTATCAATTAA----    822
                     |...||.||...|||.||.||..|.|||||..||||.||  .||.|    
BL02531___yug    774 AAATCCGGATTATGTATCAGACAAGATTGCCAATTTCAT--TTTGACATG    821

BSNT_04628___    822 -    822
                      
BL02531___yug    822 A    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04628 and BL02531

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
