Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03829 and BL02525
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:53
# Commandline: needle
# -asequence dna-align/BSNT_03829___yqeB.1.5803.seq
# -bsequence dna-align/BL02525___yqeB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03829___yqeB-BL02525___yqeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03829___yqeB-BL02525___yqeB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03829___yqeB
# 2: BL02525___yqeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 849
# Identity: 421/849 (49.6%)
# Similarity: 421/849 (49.6%)
# Gaps: 300/849 (35.3%)
# Score: 836.5
#
#
#=======================================
BSNT_03829___ 1 ATGTTGCAGAATCAATCTCATACTCTTATTGGAGTTAC---------GAA 41
|| |||||| ..|.||..||||||||.|..| |||
BL02525___yqe 1 ---TT---GAATCA---GGAAACGATTATTGGATTGTCTAAAATAGAGAA 41
BSNT_03829___ 42 AACCGCTGTATTCTTTTTATACGCTGCACTTGCAATCAT-----CGGTTT 86
|||| ||||| ||| .||||| ||||||
BL02525___yqe 42 AACC------------TTATA--------TTG-GATCATTCCACCGGTTT 70
BSNT_03829___ 87 T----GC--------AATCGGGTATT------TTATCCCGCAGATTGCGA 118
| || .|| |||.|| |||| .||.|||||.|.
BL02525___yqe 71 TAGGAGCTGTTCTTGGAT--GGTTTTTGCCTGTTAT--AGCCGATTGGGT 116
BSNT_03829___ 119 AATGGGCATT---ATCCCTCCCCTGGATCCCTCTTGAAGGACCGCTTCGG 165
|.||..|||| ||| .|.|||.||.||||.| |||.||
BL02525___yqe 117 ATTGACCATTCCAATC----------GTTCCTTTTAAAGGGC--CTTTGG 154
BSNT_03829___ 166 -CTCGTTACCTCTTTTCAGGGATCT--ACAG---CTG-----CATTTATC 204
.| ||| ||...||| || |||| ||| ||.|||||
BL02525___yqe 155 AAT--TTA--TCACATCA-----CTAAACAGTTTCTGGGTTTCAATTATC 195
BSNT_03829___ 205 ACTGCTCTTCTCGGTAT-GTGTGCGGG--GATTTGGTTCGCTCATTCTGT 251
.||||..||.||||.|| || |||.|| .|||| ||..|.||.|.|.|
BL02525___yqe 196 GCTGCATTTATCGGAATCGT-TGCCGGCCTATTT--TTTTCACAATATAT 242
BSNT_03829___ 252 T---ATTGCAATGCTGC---TGTCTGTCAAAATTACAGATCACACAGTGG 295
| |.||.|||.||.| ||| || |||.|.|||||.|..|| |
BL02525___yqe 243 TTTCACTGAAATTCTTCAAGTGT---TC---ATTTCTGATCAAAACGT-G 285
BSNT_03829___ 296 AA----TTCATCAAAG-GAA--AAAAAGTG-----CAAACAATTCATTCC 333
|| ||..|.|||| ||| ||.||||| .|||.||..||||
BL02525___yqe 286 AAGCTGTTGTTTAAAGAGAAAGAAGAAGTGATTGAGAAAAAAGACATT-- 333
BSNT_03829___ 334 GATGACATCGCTCTTGTATTTAT-----------GGATCACAAACGGCTT 372
|||...|||||| |||| |||
BL02525___yqe 334 -----------TCTGCAATTTATCTTGAGAAGAAGGAT---------CTT 363
BSNT_03829___ 373 GTCCTCCT---------GGGAACAGCCGGATATGAATTGGTA-CGGGAAG 412
||..|.|| |||.|| |||||| ||| ||.|||.
BL02525___yqe 364 GTTGTTCTTGGTCATAAGGGCAC---------TGAATT-GTACCGTGAAC 403
BSNT_03829___ 413 AAATTG-ATGAAAAA-----CCAGTAAACGTTGAGAAG-GCCTTTAGACA 455
||.||| ||.|||.| |.||.|.| ||| ||.||||.|||
BL02525___yqe 404 AACTTGAATCAAAGAGAGCGCTAGCAGA-------AAGTGCTTTTAAACA 446
BSNT_03829___ 456 GCATCATTACGAATGGGCAGCAGATGGTGATCCGTTTAAAGATCAATTTC 505
.||....||..||||| |||||.|..|||||.|||||..||.|.|.||
BL02525___yqe 447 TCACGGCTATAAATGG---GCAGACGAAGATCCCTTTAAGAATGAGTATC 493
BSNT_03829___ 506 GCCGATGGATTCCTGATGCACCAGACCTA-------TCGCAAGGCGCCCA 548
..||.|||.||.|.||| |||| ||.| |||||
BL02525___yqe 494 AACGCTGGGTTGCGGAT-CACC---CCGATTTTCCCTCGCA--------- 530
BSNT_03829___ 549 TGCCTTATTAA-AAGCTCGTCATAAAGCGCTGCAGGACGAAGAAAAAG-- 595
|||.|| |.|||..|..|| || ||| ||||..||
BL02525___yqe 531 -----TATCAATACGCTACTTTTA----GC--CAG-----AGAACGAGCT 564
BSNT_03829___ 596 --AC--GATA------TTGAAG-------AATTCCGTCTC---GAACTGG 625
|| |||| .||||| |||||.| |.| ||.||||
BL02525___yqe 565 TTACTGGATAATAAACATGAAGAGGCAAAAATTCTG-CGCAAAGACCTGG 613
BSNT_03829___ 626 CACAGCTGGGCATCGTTGTACGGGACGAAGGCACACGCCAATATTGGCGA 675
||.||||.||..|.|||.|.|.|||.||||..|.|||.|||||
BL02525___yqe 614 CAAAGCTTGGAGTGGTTATTCAGGATGAAGATAAACGGCAATA------- 656
BSNT_03829___ 676 AAAGCAGAAACCTATCCCCCGAAAATTCAGCACGGCGAAGG-ATTGTAA 723
||.|| .||.|| ||.||||
BL02525___yqe 657 -------------------CGTAA-----------GGATGGTATCGTAA 675
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