Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05555 and BL02513
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:41
# Commandline: needle
# -asequence dna-align/BSNT_05555___rapD.1.5803.seq
# -bsequence dna-align/BL02513___rapD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05555___rapD-BL02513___rapD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05555___rapD-BL02513___rapD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05555___rapD
# 2: BL02513___rapD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1306
# Identity: 658/1306 (50.4%)
# Similarity: 658/1306 (50.4%)
# Gaps: 434/1306 (33.2%)
# Score: 1404.0
#
#
#=======================================
BSNT_05555___ 1 ATGATTTCGAAGTTTATTGAAAA--------------AAGAA--TGCTAA 34
||.|..|| ||||| .|| .|
BL02513___rap 1 ---------------ATGGCCAAAGCCGTGGCTTCTCAAGAAGTCGC-CA 34
BSNT_05555___ 35 ACATGTTAGACGAGTGGTATTCCGCA-----ATGAGCAAACGCAAAATGA 79
|.|||.|..||||.||||| || ||||..|||||..|.||
BL02513___rap 35 ATATGCTGAACGACTGGTA-----CATACTGATGAAAAAACGAGACAT-- 77
BSNT_05555___ 80 ATCACGTTTGCA----CACTGAAAGAGAAAATTGA-CCAGCACCTTCCAA 124
.|||.||| || .|.|||||||..|.||.|| ..|||| .||..||
BL02513___rap 78 TTCAGGTT--CAATCGAAATGAAAGATGACATAGATAAAGCA-ATTGAAA 124
BSNT_05555___ 125 AGAT-CAAAAAGAACACAAAACTTTGGATG-CG----------TTATCAA 162
|||| .||.||||.| ||| || |||||||
BL02513___rap 125 AGATGGAAGAAGATC------------ATGACGTTCTTCTCTATTATCAA 162
BSNT_05555___ 163 TTG------TTTC-----AGGCCCGCCATCAGCTGCTTTTTGAAAA---- 197
.|| |||| || |||.|||.|||||.|
BL02513___rap 163 ATGCTGGATTTTCGCTTAAG-----------GCTTCTTCTTGAAGATATC 201
BSNT_05555___ 198 --CCAGAACGGACTCGATTC---------ATTGTTCGATGACC------T 230
|| |.|| ||| |||| ||.| || |
BL02513___rap 202 TCCC-------AATC--TTCCACAGAAAAATTG---GAAG-CCATCAGTT 238
BSNT_05555___ 231 ATATGGCCTGGAAGA--CAAA----ATGGATGATGAATTGAAATATTATC 274
.||.||.| .|||| |||| |.|||.|||.|..||||.||||||.
BL02513___rap 239 TTAAGGAC--AAAGATCCAAAAAGTACGGACGATAAGCTGAATTATTATT 286
BSNT_05555___ 275 TGTATTTTTTCTCTGGGTTATATG-AGATGGTAAAAACAGCTCCGAAA-C 322
|.|||.|.|||...|||.|.|||| ||| .||.||.|| ||| |
BL02513___rap 287 TTTATCTGTTCAAAGGGATTTATGAAGA--CTACAAGCA------AAACC 328
BSNT_05555___ 323 ATGCAGTA---CATCATTTT---AAAAAAGCTGAACAGTACCTGGCCGCC 366
||.|||.| |.|.||||| |.||.|||.|||.|....|||..||.|
BL02513___rap 329 ATACAGAAGCGCTTAATTTTTTCAGAATAGCGGAAAAAAGGCTGAGCGTC 378
BSNT_05555___ 367 ATTCAAAATACGTTTGAAGCCGCTGATTTATATTATCAAACCGCCG---- 412
|||||||||....|||||...||.||.||..|||||.|||.||..|
BL02513___rap 379 ATTCAAAATGAAATTGAAAAAGCCGAATTTCATTATAAAATCGGTGTTTT 428
BSNT_05555___ 413 GCGCCTATT---ACTTGATGAAATCACCGCC---GCTTTCCATCCAATAC 456
| |||| |||| ||| |.||.| |||.||.||.||..||
BL02513___rap 429 G----TATTACAACTT----AAA--AGCGACATGGCTGTCGATTCACCAC 468
BSNT_05555___ 457 GTCAAAAAAGCATTACACATCTATTTGCACCAA------TTCGGCTATAT 500
.||||.|..||.|.|..||||| .|||| ..|||.|||..
BL02513___rap 469 ATCAACATTGCCTCAGGCATCT------TCCAAGGGTATGACGGGTATGC 512
BSNT_05555___ 501 CAAAAAGGTAATCACCTGTAAGCTTTTGCTCGCCGTGAATTATATTGATC 550
|||...|||.||||.|||.||..|..||.|||...|.|||||||||||.|
BL02513___rap 513 CAAGCGGGTCATCAACTGCAAAATGCTGATCGGGCTCAATTATATTGACC 562
BSNT_05555___ 551 AA------------GAACGCTATGAAAAAGCTGAACAGCTTTTCAAAGAA 588
|| |||.| ||||..| ||.|.||||.|
BL02513___rap 563 AATTTAAGTTTGCCGAAAG---TGAAGTA----------TTGTTAAAGGA 599
BSNT_05555___ 589 ATC-ATTAAGAAAACCCAGCAACTACAT----GACGAAAACCTGCTATGC 633
|.| |||.|.||||||.|..|| || |||.||.|.|| |.|||
BL02513___rap 600 AGCAATTGAAAAAACCGAAAAA----ATCGGCGACCAATATCT--TTTGC 643
BSNT_05555___ 634 CACGCTTAT------TATAACCTTGGCTTTTTAAAAGCGACCGAGAAA-- 675
||||| |||||..|.||||||||.|| |||.||
BL02513___rap 644 ----CTTATACCTACTATAATATGGGCTTTTTGAA-------GAGTAAGG 682
BSNT_05555___ 676 -----AAAGACCAGGAAGCGCTTCTTTACTTTAGAAAAGTAT-----TAA 715
|||.||.|.|||||||| .|||||| |||
BL02513___rap 683 AAGATAAACACGAAGAAGCGCT-------------GAAGTATTATAATAA 719
BSNT_05555___ 716 AG-------AATC-AAGAATTTGAAATGAATTCACCAGTCT-CATATCTT 756
|| |||| ||||.|||||||.|||..| |.|||.| |.||.|||
BL02513___rap 720 AGCTTTTGCAATCAAAGACTTTGAAACGAAAGC-CAAGTATGCTTACCTT 768
BSNT_05555___ 757 CATTGTGTGTACGA---------GTCTGTCAGAGCGCTTTTTAAAACAGG 797
|..|||||.||.|| |||| |||||.|||||
BL02513___rap 769 CTATGTGTATATGAAAACACAAGGTCT---------CTTTTCAAAAC--- 806
BSNT_05555___ 798 GAAC-ATC---ACAGAAGC---TAAA---------GCCGTCCTTCAAAAA 831
.||| ||| || .|||| |||| .|.|.|.||.|||||
BL02513___rap 807 CAACGATCCCGAC-CAAGCTTTTAAATGGATCGACACAGGCTTTAAAAAA 855
BSNT_05555___ 832 GGAAAAGAATTATCTGAAAAGGTAGACATTCAAACCATTTATTTAAAATT 881
|...||||| .||||.||..|.|..|||.|| ||||||||
BL02513___rap 856 GCTCAAGAA----GTGAATAGCGAAATTTTCGAA--------TTAAAATT 893
BSNT_05555___ 882 AAAAACGCTTGAAGCCCTCTACA-------CC-----TCAG-------TG 912
.|||| |||.| |.|||| || |||| ||
BL02513___rap 894 CAAAA--CTTTA-----TATACATTACATTCCGATTGTCAGAATAAACTG 936
BSNT_05555___ 913 GAAG--ATCCCTATGAGCAGCTGCTCGAATATGTGCTTGAATTAGAA--- 957
|||| ||| .|| ||.|.|.|.|...||||||||
BL02513___rap 937 GAAGTAATC--------AAG------GACTTTATTCACCAATTAGAAGAT 972
BSNT_05555___ 958 AAAATCGAGGCGTGGGTGGATTT---AGAAGTGCTGTTAGAAGATATTA- 1003
|||| |.||.|||||.|||.| .|||.|||||.|.||.| ||
BL02513___rap 973 AAAA---AAGCATGGGTTGATCTGGAGGAATTGCTGATGGACG----TAG 1015
BSNT_05555___ 1004 CGGAATACTACA---AAAAAAAGGACGATTT---CGAAAAAGCCGCTTTT 1047
||.|.|||||.| ||||.||| || ||||.||||| .|.|.
BL02513___rap 1016 CGAATTACTATAGGGAAAATAAG------TTATACGAAGAAGCC-ATATA 1058
BSNT_05555___ 1048 TTT--------------------------ATCATGCGCGGCTGA------ 1065
||| |.|.||| |||..||
BL02513___rap 1059 TTTCTACATTAAAACAGACAAGGCAAGTAAACTTGC-CGGAAGAGGAGGA 1107
BSNT_05555___ 1065 ------ 1065
BL02513___rap 1108 GAATAG 1113
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