Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05541 and BL02485

See Amino acid alignment / Visit BSNT_05541 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:40
# Commandline: needle
#    -asequence dna-align/BSNT_05541___glcR.1.5803.seq
#    -bsequence dna-align/BL02485___glcR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05541___glcR-BL02485___glcR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05541___glcR-BL02485___glcR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05541___glcR
# 2: BL02485___glcR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity:     561/827 (67.8%)
# Similarity:   561/827 (67.8%)
# Gaps:          79/827 ( 9.6%)
# Score: 1841.5
# 
#
#=======================================

BSNT_05541___      1 ATGATTGCTGAGAAAAGGAATGAGGGCGTGTACCAAGAAGAAAGATTAGT     50
                                                |||||||||||.|||||..||.|
BL02485___glc      1 ---------------------------GTGTACCAAGAGGAAAGGCTAAT     23

BSNT_05541___     51 AGCGATTTTGGATTTTTTAAAACAGCATAACCGAATTACAACG--GAGCA     98
                     ..|.||..|.||.|.|||||||.|||||||.||.|||.|  ||  ||.||
BL02485___glc     24 TTCCATCATCGACTATTTAAAAGAGCATAAACGGATTTC--CGTTGAACA     71

BSNT_05541___     99 GATCTGTACGCTCCTGCAAGTGTCAAGGGATACAGCGCGACGAGATCTTG    148
                     .||.|||.|..|..|...|||.|||||.|||||.||..|.||.|||||.|
BL02485___glc     72 AATTTGTTCTTTATTCGGAGTTTCAAGAGATACGGCAAGGCGGGATCTGG    121

BSNT_05541___    149 TGAAACTTGAGGAACAGAATGCCATCATCCGCACAAGAGGCGGCGCCATT    198
                     |.|||||..|.||.||....|||||.|||.|.|||||.|||||.||.|||
BL02485___glc    122 TTAAACTGCAAGAGCAAGGCGCCATTATCAGGACAAGGGGCGGGGCGATT    171

BSNT_05541___    199 TTACCGACTGTGCATCAGA-AAATTCAAAG-CTATTCCGGCCGCCTGAAA    246
                     .|.||.||.||.|||  || .|..|||||| ||||||.|||.|.|||...
BL02485___glc    172 CTGCCCACCGTTCAT--GATGAGGTCAAAGACTATTCGGGCAGGCTGGGC    219

BSNT_05541___    247 ACAGTGTCTGAGGAAAAAAATAAGATCGGCAGGCTTGCAGCATCGCTTAT    296
                     |..||.||.||.|||||||..|.||||||.|   ..|||||  |||||.|
BL02485___glc    220 ATGGTTTCCGAAGAAAAAAGCATGATCGGAA---AAGCAGC--CGCTTCT    264

BSNT_05541___    297 TCA-----TGATGGAGACCGGGTGATTTTAGACGCCTCTACAACTGTTCA    341
                     |.|     .||.||.|||||..|.|||||.|||||.||.||.||.||.||
BL02485___glc    265 TTAATCAGAGAAGGCGACCGCATTATTTTGGACGCTTCCACGACAGTCCA    314

BSNT_05541___    342 GGCATGTGCAAAGCATTTGAATGCGGTTG---ATTGTACCGTAATCACCA    388
                     ..||||.|||.||||||||   .|||.||   ||||.||..|.|||||||
BL02485___glc    315 ATCATGCGCAGAGCATTTG---CCGGATGTCAATTGCACGATCATCACCA    361

BSNT_05541___    389 ATTCGATTAATCTTGCGGATGTGCTGTCCGATAAAGA----GGGAATTGA    434
                     ||||||||||.||||||||.||.||.|||  |.||||    |||  .|||
BL02485___glc    362 ATTCGATTAACCTTGCGGACGTTCTTTCC--TCAAGAAAAGGGG--CTGA    407

BSNT_05541___    435 AATTTATCTGCTGGGAGGCAAGCTGGAAAAGGAGCACCGCTTTCTGTACG    484
                     .||....|||||.|||||.|||||..||||.||||||||.|||.||||||
BL02485___glc    408 CATCCGCCTGCTTGGAGGAAAGCTTCAAAAAGAGCACCGGTTTTTGTACG    457

BSNT_05541___    485 GGTCCTCTGTGATTGAAAAGCTCTCAAGCTACCATGTTGATAAAGCGCTG    534
                     |..|||||||.|||||||||||.|||.||||.||||||||||||||||||
BL02485___glc    458 GCGCCTCTGTCATTGAAAAGCTGTCATGCTATCATGTTGATAAAGCGCTG    507

BSNT_05541___    535 ATTGGTGTGGTCGGCATTTCCGAACATGGCATTACAATTGCGCATGAAGA    584
                     ||.||.|||||.||..||||.||||||||..|||||||.||.|||||.||
BL02485___glc    508 ATCGGCGTGGTGGGGGTTTCTGAACATGGGCTTACAATCGCCCATGAGGA    557

BSNT_05541___    585 GGATGGCATGGTGAAGCGGAAAATGATACAGCAGGCAAAGCAGGTAATCG    634
                     |||.||.||||||||||||||||||||....||.||.|||||.||.||.|
BL02485___glc    558 GGACGGAATGGTGAAGCGGAAAATGATTTCCCAAGCGAAGCAAGTCATAG    607

BSNT_05541___    635 CGCTTGCAGACCATTCTAAGCTGGGCAGCACCAGTTTTTATCAGTATGCG    684
                     |||||||.||||||||.||..|.||.||.||...||||||.|..||.||.
BL02485___glc    608 CGCTTGCCGACCATTCGAAAATCGGGAGAACGGATTTTTACCGATACGCT    657

BSNT_05541___    685 GAGCTGAATGAAATCGACCTTTTGATTACAGACAGGCTTC---CGAATCA    731
                     ||.||.|.|||.||.||||||.|.|||||||||.||||.|   ||||.|.
BL02485___glc    658 GAACTCAGTGACATTGACCTTCTCATTACAGACCGGCTGCCGTCGAAACC    707

BSNT_05541___    732 GGCATTTTGTGA--CTTGCTTGACCGAA-ACGGCGTTGAGCTTCTCGTGA    778
                     |    |||..||  | ||||||| .||| |||..||.|||||.||.|||.
BL02485___glc    708 G----TTTCAGAAGC-TGCTTGA-TGAACACGATGTGGAGCTGCTTGTGG    751

BSNT_05541___    779 CAGAGCAGGATGAAGGAAAGGACTGA-    804
                     |.||.||..|.||       .|||.| 
BL02485___glc    752 CTGAACATCACGA-------TACTTAA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05541 and BL02485

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
