Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05540 and BL02484
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:40
# Commandline: needle
# -asequence dna-align/BSNT_05540___ywpJ.1.5803.seq
# -bsequence dna-align/BL02484___ywpJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05540___ywpJ-BL02484___ywpJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05540___ywpJ-BL02484___ywpJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05540___ywpJ
# 2: BL02484___ywpJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity: 601/938 (64.1%)
# Similarity: 601/938 (64.1%)
# Gaps: 139/938 (14.8%)
# Score: 1829.5
#
#
#=======================================
BSNT_05540___ 1 GTGAAATTAATTGCGATTGATTTAGATGGAACCTTACTCAACA--GCAAG 48
.|||||.|.||||||.|.||||||||.||.||..|..|.|||| |.|||
BL02484___ywp 1 ATGAAAATGATTGCGGTCGATTTAGACGGGACGCTGTTAAACAGTGAAAG 50
BSNT_05540___ 49 CA-----TCAGGTAAGCTTGGAAAA-------------TGAAAACGCACT 80
|| ||| || ||||| |.||||.||
BL02484___ywp 51 CAAGATCTCA---AA-----GAAAAATATCGATGCGATTAAAAAAGC--- 89
BSNT_05540___ 81 GCGGCAGGCGCAGCTGGACGGCATTGAAGTGGTGGTGTCAACTGGGCGCG 130
||||.| ..||||.||||||||.||.||..|.||.|||.|.|
BL02484___ywp 90 GCGGGA---------ACACGGGATTGAAGTAGTAGTTGCCACGGGGAGAG 130
BSNT_05540___ 131 CTCAT--TTTGACGTCATGTCA----ATCTTTGAACCGCTGGGGATCAAA 174
||| |||||.|| ||| ||.|||||.|||...||.||.|||
BL02484___ywp 131 --CATCCTTTGATGT----TCAAACGATATTTGAGCCGACAGGTATTAAA 174
BSNT_05540___ 175 ACATGGGTCATCAGTGCAAACGGCGCCGTCATTCACGATCCCGACGGCAG 224
||||||.|.||||||||.|||||.||.||.|||||.|||||.||.|||||
BL02484___ywp 175 ACATGGATTATCAGTGCCAACGGAGCGGTGATTCATGATCCTGAAGGCAG 224
BSNT_05540___ 225 GCTTTATCATCACGAAACGATTGATAAGAAACGGGC-GTATGACATTCTC 273
.|||||.|||...|...||.|||||..||||||||| |.|.|| |||||
BL02484___ywp 225 CCTTTACCATTCGGTGCCGCTTGATCGGAAACGGGCAGAAGGA-ATTCT- 272
BSNT_05540___ 274 TC-ATGGCTTGAGTCGGAA---AACTATTATTATGAGGTATTCACAGGTT 319
|| ||||||||| .||| |||||.|||||||||||.||||..|.|.
BL02484___ywp 273 TCGATGGCTTGA---AGAAAATAACTACTATTATGAGGTGTTCAGCGATG 319
BSNT_05540___ 320 CAGCGATTTATACGCCGCAAAACGGCAGAGAACTTCTTGATGTTGAGCTG 369
.|||.||.|..|||||||||||||||.|.||.||.|||||..||||||||
BL02484___ywp 320 AAGCAATCTTCACGCCGCAAAACGGCCGCGAGCTGCTTGACATTGAGCTG 369
BSNT_05540___ 370 GACAGATTCAGAAGCGCAAACCCGGAAACAGATCTTTCTGTCCTTAAG-- 417
|||.|.||.|.|||||||||.||.||..||||.||.|| |||
BL02484___ywp 370 GACCGCTTGAAAAGCGCAAATCCTGAGGCAGACCTATC-------AAGGC 412
BSNT_05540___ 418 -----CAGGCGGCCGAGGTGCAATACAGCCAATCGGGCTTTGCTTACATT 462
|..|||||.||...|||...|||||||...||.|..||.|||||.
BL02484___ywp 413 TGGAACTCGCGGCTGAACAGCAGCTCAGCCAAAACGGATACGCGTACATC 462
BSNT_05540___ 463 AACTCCTTTCAAGAGCTGTTTGAAGCCGATCAGCCAATCGATTTT----- 507
|.|||||.|...||.||||||..||||| .||..|||.||
BL02484___ywp 463 AGCTCCTATACCGATCTGTTTTTAGCCG------GAAAGGATGTTAATGT 506
BSNT_05540___ 508 ---TACAATATT--CTCGGCTTTTCTTTCTTC--AAAGAAAAGCTTGAGG 550
||..||||| || ||||||| ||| ||.||||||||.||..
BL02484___ywp 507 ATATAACATATTAGCT----TTTTCTT--TTCATAAGGAAAAGCTGGAAA 550
BSNT_05540___ 551 CAGGCTGGAAAAGATATGAGCATGCCGAAGATTTGACGCTTGTCAGTTCG 600
|.|||||||....||.|||..||||..|||||.|.||||||||||.|||.
BL02484___ywp 551 CGGGCTGGAGGCAATTTGAAGATGCACAAGATATTACGCTTGTCACTTCA 600
BSNT_05540___ 601 GCTGAGCACAACTTTGAGCTT-----TCTTCCCGCAAAGCTTCCAAGGGG 645
||.||||||||||||||..|| ||||| |.||.||.||.|||
BL02484___ywp 601 GCCGAGCACAACTTTGAAATTGAGCATCTTC-----AGGCGTCAAAAGGG 645
BSNT_05540___ 646 CAGGCGCTGAAGAGGCTTGCAAAACAGCT--GAATATTCCGCTCGAGGAA 693
|.|||..||.|||.||||.||.|..|||| |.|| |||| ||..|||||
BL02484___ywp 646 CTGGCATTGGAGAAGCTTTCACACAAGCTCGGCAT-TTCC-CTTCAGGAA 693
BSNT_05540___ 694 ACCGCTGCTGTAGGTGACAGTTTAAATGACAAATCGATGCTGGAGGCTGC 743
||.|||||.||.||.|||||..|.|||||....|||||||||.||...||
BL02484___ywp 694 ACAGCTGCCGTTGGAGACAGCCTCAATGATTTTTCGATGCTGAAGATCGC 743
BSNT_05540___ 744 -GGGAAAAGGTGTAGCGATGGGCAATGCCCGGGAAGATATCAAATCGATA 792
||||||||.| |.||.|||||||||||.||.|.|||.||.|||..|||.
BL02484___ywp 744 GGGGAAAAGCT-TTGCCATGGGCAATGCGCGCGGAGACATTAAAGAGATG 792
BSNT_05540___ 793 GCCGATGCGGTCACCTTAACCAATGACGAACATGGTGTCGCACATATGAT 842
||.||||.|||.||..|.||.|||||.|||.||||.||.||.||.||..|
BL02484___ywp 793 GCTGATGAGGTGACGCTCACTAATGATGAAAATGGCGTTGCTCACATCCT 842
BSNT_05540___ 843 GAAACATTTGATGT----AG------------------ 858
|.|.||..|||| | ||
BL02484___ywp 843 GCATCAGCTGAT-TGAACAGCAAGTCAAACCGGTTTAA 879
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