Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05534 and BL02483
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05534___ywqC.1.5803.seq
# -bsequence dna-align/BL02483___ywqC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05534___ywqC-BL02483___ywqC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05534___ywqC-BL02483___ywqC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05534___ywqC
# 2: BL02483___ywqC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 846
# Identity: 458/846 (54.1%)
# Similarity: 458/846 (54.1%)
# Gaps: 222/846 (26.2%)
# Score: 1055.5
#
#
#=======================================
BSNT_05534___ 1 ATGGGAGAATC-TACTAGCTTAAAAGAGATATTATCAACGTT---AACAA 46
|||.||| ||| ||...||||.|| ||||.|..|||.|||| ||.||
BL02483___ywq 1 ATGAGAG-ATCATATCGGCTTTAA--AGATGTGTTCATCGTTTTGAAAAA 47
BSNT_05534___ 47 AA-------------CGCATACTTTTGATTATGATTGTAACCGCAGCT-- 81
|| |||| .||||.|..|||| |.||.|||
BL02483___ywq 48 AAGATTCGTTCTGATCGCA-----CTGATCACCATTG---CGGCTGCTTT 89
BSNT_05534___ 82 -GCCACTGCTGCCGGCGGACTCATTAGTTTCTTCGCACTTACACCCATCT 130
.|||..|||||||.| .||| |||.||.| ||.|.||||.|||
BL02483___ywq 90 GTCCAGCGCTGCCGTC-AACT------TTTATTGG--CTCAAACCCGTCT 130
BSNT_05534___ 131 ATGAAAATTCAACTCAGATTCTGGTCAACCAATCGAAAAATGAACGAAAA 180
||.|....||..|.||.||.||..||||| |..||..||
BL02483___ywq 131 ATCAGGCATCCGCCCAAATCCTCATCAAC------------GGCCGTCAA 168
BSNT_05534___ 181 GAAGTCCAA-TTTAACGATGTCCAAACCAATCTTCAGTTAATCAATACGT 229
|.|||.|| ||.|.|||..||||.|||||.|||.|..|.|||||.||.|
BL02483___ywq 169 -ACGTCGAACTTCACCGACATCCAGACCAACCTTGAACTTATCAACACAT 217
BSNT_05534___ 230 ACAATGTCATCATTAAGAGCCCTGCCATCTTAGATGAAGTCATTAAAGA- 278
||||.|||||.||.||.|||||...|||.|||.||.|.| |||||||
BL02483___ywq 218 ACAACGTCATTATGAAAAGCCCGATCATTTTAAATAAGG---TTAAAGAC 264
BSNT_05534___ 279 ------AATGGGCCTGTCGATGACATCCCAAGAACTGAATGACAAAATTA 322
|| |||.|||...||..|..||||.|||||..|.|||||.|
BL02483___ywq 265 GAACTTAA----CCTTTCGGAAACGGCTGAAGACCTGAAGCAAAAAATCA 310
BSNT_05534___ 323 CCG-TATCCAGCGAACAGGACTCCCAAGTGGTCAACATATCAGTCAGGGA 371
|.| ||| |||||||.|.||.||.||..|.|||| .|||| ||.|.||
BL02483___ywq 311 CGGTTAT-CAGCGAAAATGAATCGCAGATTGTCA--GTATC--TCCGCGA 355
BSNT_05534___ 372 -TGAAAACGCGGA-------AACAGCGGCTCATATTGCCAATACTATAGC 413
|||.|| ||| || .|||||..||||.||.|||||..|.||
BL02483___ywq 356 CTGACAA---GGATTATTCCAA-GGCGGCGGATATCGCGAATACAGTCGC 401
BSNT_05534___ 414 ATCTGTTTTTC-AAGACAAAATCAC-ATCCATTATGAATGTTGACAATG- 460
..|.||.|||| ||||.|.|.|..| || |||||| |.|||.||||
BL02483___ywq 402 CGCCGTATTTCAAAGAGACATTGGCGAT--ATTATG---GGTGAAAATGC 446
BSNT_05534___ 461 -----TCAGCATTCTGTCAAAAGCCGAGGTTTCAGAACATCCGTCCCCTG 505
|||||.||.|..|.||||||.| |.|.||.||| ||.||||
BL02483___ywq 447 CGAAATCAGCCTTGTTGCGAAAGCCAA---TCCCGATCAT---TCACCTG 490
BSNT_05534___ 506 TATCGCCAAAGCCGCTACTAAACATTGC--CATCGC---GTTTGCAG--- 547
| ||.|...|||| |.|..||..|.|.| |||||| .|||.|||
BL02483___ywq 491 T-TCCCGTCAGCC-CGAACAAGAAGTTCAACATCGCTCTTTTTACAGGGT 538
BSNT_05534___ 548 -------CCGGATTGGCGGGAAGCATC-GGACTGGCCTTCCTGCTCGAGC 589
.|.|.|||||| | ||.||.||.||..|||||||||
BL02483___ywq 539 TCGGCCTTCTGTTTGGCG--------CTGGGCTAGCATTTTTGCTCGAGC 580
BSNT_05534___ 590 ATTTGGATAATA-CGATC-AAATCGGAAGAGCAGCTCGAA---------- 627
.||||.|.|||| ||.|| |||| |||||..|..|||||
BL02483___ywq 581 TTTTGAAAAATACCGTTCGAAAT--GAAGAAGACATCGAAAAAGATCTGA 628
BSNT_05534___ 628 ----TC-CTTGCT-GGACATA-CCTGTTT------------TAGGGACAG 658
|| |.||.| |||.||| .||||.| .|.||||||
BL02483___ywq 629 ATGTTCACGTGTTGGGAAATATTCTGTATGTAAAACCGAAAAAAGGACAG 678
BSNT_05534___ 659 TTTCCACCATTGCGAATGAGCAGAAAA-------CAGCAAAGACCTTACA 701
||.|...|||.|.||| |.|||||||||.||
BL02483___ywq 679 -----------GCCAGGAAGCTGGAAAGCTTTGTCGGCAAAGACCATA-- 715
BSNT_05534___ 702 GGGTTTCCAATCTGAAAAAACGGGGAGTGGACATTTTGGCGCTTAG 747
||.|||||
BL02483___ywq 716 -------CATTCTGA------------------------------- 723
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