Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05506 and BL02481
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:38
# Commandline: needle
# -asequence dna-align/BSNT_05506___ywrD.1.5803.seq
# -bsequence dna-align/BL02481___ywrD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05506___ywrD-BL02481___ywrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05506___ywrD-BL02481___ywrD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05506___ywrD
# 2: BL02481___ywrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1667
# Identity: 1120/1667 (67.2%)
# Similarity: 1120/1667 (67.2%)
# Gaps: 172/1667 (10.3%)
# Score: 3463.0
#
#
#=======================================
BSNT_05506___ 1 ATGAACAGATCTG-TCATCGGTACAAAGCAAATGGTCGTCAGTCCGCATT 49
|||.|.| |.||| ..||||||.|.||.||||||||.||||||||.||||
BL02481___ywr 1 ATGGAGA-AGCTGAAGATCGGTTCGAAACAAATGGTTGTCAGTCCTCATT 49
BSNT_05506___ 50 ACCTCGCTTCTCAAGCCGGAAACCGCATACTAGACAAGGGAGGCAACGCG 99
|.||||||||.|..||.||.|.|..|||..|.||.|||||.||.||||||
BL02481___ywr 50 ATCTCGCTTCGCTTGCAGGCAGCATCATCATGGAGAAGGGGGGGAACGCG 99
BSNT_05506___ 100 TTTGACGCTGCTGTTGCGGTGAGTGCTTGTCTTGCGGTTGTGTATCCGCA 149
||||||||.||||||||.||.||.||.||.||.||.|||||.||||||||
BL02481___ywr 100 TTTGACGCCGCTGTTGCAGTAAGCGCGTGCCTAGCTGTTGTCTATCCGCA 149
BSNT_05506___ 150 TATGACCGGACTTGGCGGGGATTCCTTTTGGCTAACCTTTCACCA-GGAA 198
||||||.|||||.||.||||||.||||||||||.|..|.||||.| ||||
BL02481___ywr 150 TATGACAGGACTCGGAGGGGATGCCTTTTGGCTGATGTATCACAATGGAA 199
BSNT_05506___ 199 ACAAAGGCAG-TAAAAGTCTACAATGGCAGCGGCCGTTCAGG--AAAAAA 245
.| .||.|| |.||||..||||||||||||||.||.||.|| ..|||.
BL02481___ywr 200 GC--GGGGAGATCAAAGGGTACAATGGCAGCGGGCGGTCGGGGCGGAAAG 247
BSNT_05506___ 246 CGTAACGAGAGATGTATATAAGGGAAAAAGCGCG--ATTCCGCTGCGGGG 293
||.|.||.||...||||| |||| |.|||||| ||||||.|..||||
BL02481___ywr 248 CGGACCGGGATCAGTATA-AAGG---AGAGCGCGCCATTCCGGTCAGGGG 293
BSNT_05506___ 294 GATTGAC------AGTGCCATTACCGTGCCGGGAATGGTTGATAGCTGGG 337
| |||||.||||||||||||||.|||||.||.|||||||
BL02481___ywr 294 ------CCCAAGGAGTGCGATTACCGTGCCGGGGATGGTGGACAGCTGGG 337
BSNT_05506___ 338 ATGCGGTCCTGAAGGAGTACGGGCGTCTGTCTCTTGCAGATGTATTGGAG 387
..|...|.|||...|.||||||.|||||.||.|||..|||.||..||.||
BL02481___ywr 338 CCGAAATACTGGCTGCGTACGGCCGTCTATCGCTTCGAGAGGTGCTGAAG 387
BSNT_05506___ 388 CCCGCACGCGAT----TATGCCCAAAATGGGTTTCCTGTATCAGCTGATC 433
|| .||||| |||||..||||.|||||.||.||.||..||||||
BL02481___ywr 388 CC----GGCGATTATGTATGCAGAAAAGGGGTTCCCGGTCTCGCCTGATC 433
BSNT_05506___ 434 AGTGTCGTCACACAGAAAAGAATATTGAATTGCTGGCTTCC---ACGCCT 480
|.||||...||||.|..||.||...|||||.||| |||| |.|||.
BL02481___ywr 434 AATGTCAAAACACGGTGAAAAACGCTGAATGGCT---TTCCTGTATGCCG 480
BSNT_05506___ 481 TACACGGCTGA----CATCTTCACGAGAAGGGGCAAA--GCACCTGTCCC 524
..|||.||.|| .|||||| ||.|| ||.||| || |||.| ||
BL02481___ywr 481 ATCACTGCAGATATTTATCTTC-CGGGA---GGAAAACCGC-CCTCT-CC 524
BSNT_05506___ 525 GGGAGAGCGGTTTTTGCAAAAAGAGCTTGCAGACAGTCTGAATGTGATTG 574
.||.|||||.|||.||||.||||||||.||...||.|.|||...||||.|
BL02481___ywr 525 AGGTGAGCGTTTTGTGCAGAAAGAGCTCGCGCGCACTTTGACGTTGATCG 574
BSNT_05506___ 575 CTGAAAAAGGAAGAAGCGCATTTTATGAAGGAGATCTCGC-------TCA 617
||||.|||||||||..|.|.||||||.||||.||..|.|| |.|
BL02481___ywr 575 CTGAGAAAGGAAGAGACACCTTTTATAAAGGGGAAATTGCCCAAGCTTTA 624
BSNT_05506___ 618 GCGGATTGTCTCACATTTACAGAATAACGGCAGTTACATGACAATCGATG 667
||.|..|.|||| ||.||.|||||..|...|.|||...|.||.|
BL02481___ywr 625 GCAGCCTATCTC-------CAAAACAACGGGGGCATCTTGAACCTTGAAG 667
BSNT_05506___ 668 ATTTTAAAGC-----GCATCGGGGTGAGTGGGCAGCGCCTGTATCAAGTG 712
|||| | ||||||.||.||.|||| |||.|| .|
BL02481___ywr 668 ATTT-----CGGGCTGCATCGAGGGGAATGGG-------TGTCTC---CG 702
BSNT_05506___ 713 ATTATC-----------GAGGATACAGTG---TGTATCAGGCGCCGCCGA 748
.|| || ||||||| || |.|||||...|||.||||
BL02481___ywr 703 CTT-TCCTCCACATACAGAGGATA---TGCCATCTATCAAATGCCTCCGA 748
BSNT_05506___ 749 ATTCTCAGGGATTTACCGGT-TTATTAACACTGAACATTTTGGAAAACTA 797
||||.||.|||||||||||| ||| |.|||.|||||||||||||||||||
BL02481___ywr 749 ATTCACAAGGATTTACCGGTCTTA-TGACATTGAACATTTTGGAAAACTA 797
BSNT_05506___ 798 TGATTTCACCCAAATCGAGCACGGTTCATTTGAGTATTATCATGTGCTTG 847
.||.||...|...||||||||||||||.||.||||||||||||.|||||.
BL02481___ywr 798 CGACTTTGGCATGATCGAGCACGGTTCTTTCGAGTATTATCATCTGCTTA 847
BSNT_05506___ 848 TGGAGGCGTTGAAAAAGAGTTTTGTAGATCGGAATGC-----CTTTTTGA 892
|.||.||.||||||...|||||| ||.||.||| ..|.||||
BL02481___ywr 848 TCGAAGCATTGAAATTAAGTTTT-----TCCGACTGCAACAAAGTATTGA 892
BSNT_05506___ 893 CTGACCCTGCGTTTGCTGAC--ATTCCGCTTGAAAGGCTTTTAGATAAAA 940
|||||||.|..|| ||.|| ||||||||||.|.|.||..|.||.|||.
BL02481___ywr 893 CTGACCCGGAATT--CTCACAGATTCCGCTTGGACGCCTACTGGACAAAG 940
BSNT_05506___ 941 ATTATGC---GAAACGATTGGCGGGAGAAATCGG-CTATCTGGCAGAACC 986
|.||||| |.|.| ||||.|.|.||||||| || .|.|||....|.
BL02481___ywr 941 AGTATGCCCGGGAGC---TGGCCGCAAAAATCGGACT-GCCGGCGCTTCA 986
BSNT_05506___ 987 GGCAGAAAGCAGGCCGGTGGGAAGTGATACGGCATATGCGGCCGTAATCG 1036
|||.||.|||.|||||.|.||.||.|||||..|.|||||.||.|.|.|.|
BL02481___ywr 987 GGCGGAGAGCCGGCCGCTCGGCAGCGATACATCTTATGCAGCAGCAGTAG 1036
BSNT_05506___ 1037 ATGCGGATGGCAACGCAGTGTCATTCATTCAAAGCCTGTACTTTGAATTT 1086
|||..||.||.||.||.||.||.||.||||||||..||||.||.|||||.
BL02481___ywr 1037 ATGAAGACGGGAATGCTGTTTCGTTTATTCAAAGTTTGTATTTCGAATTC 1086
BSNT_05506___ 1087 GGCTCGGCAGTCACTGCCGGTGATACAGGCAT-ATTACTGCAAAACCGCG 1135
|||||.|..||.||.||.||.|||||.|||.| ||| .||||.|||.|.|
BL02481___ywr 1087 GGCTCAGGTGTGACAGCTGGAGATACCGGCGTCATT-TTGCAGAACAGAG 1135
BSNT_05506___ 1136 GATCATTTTTCTCACTGGATGAAAATCATGTCAACACGCTTGAACCGAGA 1185
|..|.||||||||.||.|||....|.||||||||.|||||.||.|||.||
BL02481___ywr 1136 GGGCGTTTTTCTCGCTTGATCCCGACCATGTCAATACGCTGGAGCCGGGA 1185
BSNT_05506___ 1186 AAGCGCACCTTCCATACGTTGATGCCGGCTATGGTCTGTAAAGGCGGAAA 1235
||..|.||.||.||||||.|||||||.||.||||..|.||.||||||.||
BL02481___ywr 1186 AAAAGAACTTTTCATACGCTGATGCCCGCCATGGCGTTTAGAGGCGGCAA 1235
BSNT_05506___ 1236 GCCAAAAATTCTGTACGGCAC------ACAAGGCGGCGAAGGCCAGCCGC 1279
|||.|||.|.||.|||||.|| .|||||.||.|||||.|||||||
BL02481___ywr 1236 GCCGAAATTCCTTTACGGAACGCAAGGGCAAGGGGGAGAAGGACAGCCGC 1285
BSNT_05506___ 1280 AGACCCAGACGGCCATCATTACCCGAATGCTGGACTACGGAATGCATCC- 1328
||||.||||||||..|.|||||..|||||.|.||.|||||.|||.||||
BL02481___ywr 1286 AGACGCAGACGGCTCTTATTACGAGAATGGTAGATTACGGGATGGATCCG 1335
BSNT_05506___ 1329 ---ACAGCAGGCAATTAGCGAACCGCGCTGGGTATGGGGCAGAACGTGGG 1375
|||||.| ||...||||||.|.|||||||||||||||||.||||
BL02481___ywr 1336 CAAACAGCTG----TTCATGAACCGAGATGGGTATGGGGCAGAACATGGG 1381
BSNT_05506___ 1376 GAGAGGAATAC-----GAAGGTCTCAGAGTCGAGGGCAGATTCACAGAC- 1419
||||| | ||||||.|.|||.|.||..|||||.|..| |.|
BL02481___ywr 1382 GAGAG-----CGGGTGGAAGGTGTAAGAATAGAAAGCAGAGTGGC-GCCT 1425
BSNT_05506___ 1420 -AAAACAATCCAAAAACTGAAAGACAGC--GGGCATCTCGTGGAGGTTGT 1466
||...|.|.| ||||||| .||.||| |||||||..||....|||||
BL02481___ywr 1426 GAAGTGATTGC-AAAACTG--CGAAAGCATGGGCATCATGTAACCGTTGT 1472
BSNT_05506___ 1467 CGGTGACTATGATCCGCTGATGGGACAAG-CGGCTGCAATCA---AAGTT 1512
||||||.|.|||...|.|||||||.||.| ||| ||||| |..||
BL02481___ywr 1473 CGGTGAATTTGACGGGGTGATGGGTCATGCCGG----AATCATTGAGATT 1518
BSNT_05506___ 1513 GATGAAGAAGGCTTTCT-CCAAGGCGGAGCCGATCCTCGGGGAGACGGAG 1561
||.||..|||||||.|| ..|.||.|||| ||||||..|..|.||.||.|
BL02481___ywr 1519 GACGATCAAGGCTTCCTGAGAGGGGGGAG-CGATCCGAGAAGCGATGGGG 1567
BSNT_05506___ 1562 CGGCTGTGGGGATATAA 1578
|.||..|.||.||.|||
BL02481___ywr 1568 CAGCAATCGGCATTTAA 1584
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