Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05506 and BL02481

See Amino acid alignment / Visit BSNT_05506 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:38
# Commandline: needle
#    -asequence dna-align/BSNT_05506___ywrD.1.5803.seq
#    -bsequence dna-align/BL02481___ywrD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05506___ywrD-BL02481___ywrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05506___ywrD-BL02481___ywrD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05506___ywrD
# 2: BL02481___ywrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1667
# Identity:    1120/1667 (67.2%)
# Similarity:  1120/1667 (67.2%)
# Gaps:         172/1667 (10.3%)
# Score: 3463.0
# 
#
#=======================================

BSNT_05506___      1 ATGAACAGATCTG-TCATCGGTACAAAGCAAATGGTCGTCAGTCCGCATT     49
                     |||.|.| |.||| ..||||||.|.||.||||||||.||||||||.||||
BL02481___ywr      1 ATGGAGA-AGCTGAAGATCGGTTCGAAACAAATGGTTGTCAGTCCTCATT     49

BSNT_05506___     50 ACCTCGCTTCTCAAGCCGGAAACCGCATACTAGACAAGGGAGGCAACGCG     99
                     |.||||||||.|..||.||.|.|..|||..|.||.|||||.||.||||||
BL02481___ywr     50 ATCTCGCTTCGCTTGCAGGCAGCATCATCATGGAGAAGGGGGGGAACGCG     99

BSNT_05506___    100 TTTGACGCTGCTGTTGCGGTGAGTGCTTGTCTTGCGGTTGTGTATCCGCA    149
                     ||||||||.||||||||.||.||.||.||.||.||.|||||.||||||||
BL02481___ywr    100 TTTGACGCCGCTGTTGCAGTAAGCGCGTGCCTAGCTGTTGTCTATCCGCA    149

BSNT_05506___    150 TATGACCGGACTTGGCGGGGATTCCTTTTGGCTAACCTTTCACCA-GGAA    198
                     ||||||.|||||.||.||||||.||||||||||.|..|.||||.| ||||
BL02481___ywr    150 TATGACAGGACTCGGAGGGGATGCCTTTTGGCTGATGTATCACAATGGAA    199

BSNT_05506___    199 ACAAAGGCAG-TAAAAGTCTACAATGGCAGCGGCCGTTCAGG--AAAAAA    245
                     .|  .||.|| |.||||..||||||||||||||.||.||.||  ..|||.
BL02481___ywr    200 GC--GGGGAGATCAAAGGGTACAATGGCAGCGGGCGGTCGGGGCGGAAAG    247

BSNT_05506___    246 CGTAACGAGAGATGTATATAAGGGAAAAAGCGCG--ATTCCGCTGCGGGG    293
                     ||.|.||.||...||||| ||||   |.||||||  ||||||.|..||||
BL02481___ywr    248 CGGACCGGGATCAGTATA-AAGG---AGAGCGCGCCATTCCGGTCAGGGG    293

BSNT_05506___    294 GATTGAC------AGTGCCATTACCGTGCCGGGAATGGTTGATAGCTGGG    337
                           |      |||||.||||||||||||||.|||||.||.|||||||
BL02481___ywr    294 ------CCCAAGGAGTGCGATTACCGTGCCGGGGATGGTGGACAGCTGGG    337

BSNT_05506___    338 ATGCGGTCCTGAAGGAGTACGGGCGTCTGTCTCTTGCAGATGTATTGGAG    387
                     ..|...|.|||...|.||||||.|||||.||.|||..|||.||..||.||
BL02481___ywr    338 CCGAAATACTGGCTGCGTACGGCCGTCTATCGCTTCGAGAGGTGCTGAAG    387

BSNT_05506___    388 CCCGCACGCGAT----TATGCCCAAAATGGGTTTCCTGTATCAGCTGATC    433
                     ||    .|||||    |||||..||||.|||||.||.||.||..||||||
BL02481___ywr    388 CC----GGCGATTATGTATGCAGAAAAGGGGTTCCCGGTCTCGCCTGATC    433

BSNT_05506___    434 AGTGTCGTCACACAGAAAAGAATATTGAATTGCTGGCTTCC---ACGCCT    480
                     |.||||...||||.|..||.||...|||||.|||   ||||   |.|||.
BL02481___ywr    434 AATGTCAAAACACGGTGAAAAACGCTGAATGGCT---TTCCTGTATGCCG    480

BSNT_05506___    481 TACACGGCTGA----CATCTTCACGAGAAGGGGCAAA--GCACCTGTCCC    524
                     ..|||.||.||    .|||||| ||.||   ||.|||  || |||.| ||
BL02481___ywr    481 ATCACTGCAGATATTTATCTTC-CGGGA---GGAAAACCGC-CCTCT-CC    524

BSNT_05506___    525 GGGAGAGCGGTTTTTGCAAAAAGAGCTTGCAGACAGTCTGAATGTGATTG    574
                     .||.|||||.|||.||||.||||||||.||...||.|.|||...||||.|
BL02481___ywr    525 AGGTGAGCGTTTTGTGCAGAAAGAGCTCGCGCGCACTTTGACGTTGATCG    574

BSNT_05506___    575 CTGAAAAAGGAAGAAGCGCATTTTATGAAGGAGATCTCGC-------TCA    617
                     ||||.|||||||||..|.|.||||||.||||.||..|.||       |.|
BL02481___ywr    575 CTGAGAAAGGAAGAGACACCTTTTATAAAGGGGAAATTGCCCAAGCTTTA    624

BSNT_05506___    618 GCGGATTGTCTCACATTTACAGAATAACGGCAGTTACATGACAATCGATG    667
                     ||.|..|.||||       ||.||.|||||..|...|.|||...|.||.|
BL02481___ywr    625 GCAGCCTATCTC-------CAAAACAACGGGGGCATCTTGAACCTTGAAG    667

BSNT_05506___    668 ATTTTAAAGC-----GCATCGGGGTGAGTGGGCAGCGCCTGTATCAAGTG    712
                     ||||     |     ||||||.||.||.||||       |||.||   .|
BL02481___ywr    668 ATTT-----CGGGCTGCATCGAGGGGAATGGG-------TGTCTC---CG    702

BSNT_05506___    713 ATTATC-----------GAGGATACAGTG---TGTATCAGGCGCCGCCGA    748
                     .|| ||           |||||||   ||   |.|||||...|||.||||
BL02481___ywr    703 CTT-TCCTCCACATACAGAGGATA---TGCCATCTATCAAATGCCTCCGA    748

BSNT_05506___    749 ATTCTCAGGGATTTACCGGT-TTATTAACACTGAACATTTTGGAAAACTA    797
                     ||||.||.|||||||||||| ||| |.|||.|||||||||||||||||||
BL02481___ywr    749 ATTCACAAGGATTTACCGGTCTTA-TGACATTGAACATTTTGGAAAACTA    797

BSNT_05506___    798 TGATTTCACCCAAATCGAGCACGGTTCATTTGAGTATTATCATGTGCTTG    847
                     .||.||...|...||||||||||||||.||.||||||||||||.|||||.
BL02481___ywr    798 CGACTTTGGCATGATCGAGCACGGTTCTTTCGAGTATTATCATCTGCTTA    847

BSNT_05506___    848 TGGAGGCGTTGAAAAAGAGTTTTGTAGATCGGAATGC-----CTTTTTGA    892
                     |.||.||.||||||...||||||     ||.||.|||     ..|.||||
BL02481___ywr    848 TCGAAGCATTGAAATTAAGTTTT-----TCCGACTGCAACAAAGTATTGA    892

BSNT_05506___    893 CTGACCCTGCGTTTGCTGAC--ATTCCGCTTGAAAGGCTTTTAGATAAAA    940
                     |||||||.|..||  ||.||  ||||||||||.|.|.||..|.||.|||.
BL02481___ywr    893 CTGACCCGGAATT--CTCACAGATTCCGCTTGGACGCCTACTGGACAAAG    940

BSNT_05506___    941 ATTATGC---GAAACGATTGGCGGGAGAAATCGG-CTATCTGGCAGAACC    986
                     |.|||||   |.|.|   ||||.|.|.||||||| || .|.|||....|.
BL02481___ywr    941 AGTATGCCCGGGAGC---TGGCCGCAAAAATCGGACT-GCCGGCGCTTCA    986

BSNT_05506___    987 GGCAGAAAGCAGGCCGGTGGGAAGTGATACGGCATATGCGGCCGTAATCG   1036
                     |||.||.|||.|||||.|.||.||.|||||..|.|||||.||.|.|.|.|
BL02481___ywr    987 GGCGGAGAGCCGGCCGCTCGGCAGCGATACATCTTATGCAGCAGCAGTAG   1036

BSNT_05506___   1037 ATGCGGATGGCAACGCAGTGTCATTCATTCAAAGCCTGTACTTTGAATTT   1086
                     |||..||.||.||.||.||.||.||.||||||||..||||.||.|||||.
BL02481___ywr   1037 ATGAAGACGGGAATGCTGTTTCGTTTATTCAAAGTTTGTATTTCGAATTC   1086

BSNT_05506___   1087 GGCTCGGCAGTCACTGCCGGTGATACAGGCAT-ATTACTGCAAAACCGCG   1135
                     |||||.|..||.||.||.||.|||||.|||.| ||| .||||.|||.|.|
BL02481___ywr   1087 GGCTCAGGTGTGACAGCTGGAGATACCGGCGTCATT-TTGCAGAACAGAG   1135

BSNT_05506___   1136 GATCATTTTTCTCACTGGATGAAAATCATGTCAACACGCTTGAACCGAGA   1185
                     |..|.||||||||.||.|||....|.||||||||.|||||.||.|||.||
BL02481___ywr   1136 GGGCGTTTTTCTCGCTTGATCCCGACCATGTCAATACGCTGGAGCCGGGA   1185

BSNT_05506___   1186 AAGCGCACCTTCCATACGTTGATGCCGGCTATGGTCTGTAAAGGCGGAAA   1235
                     ||..|.||.||.||||||.|||||||.||.||||..|.||.||||||.||
BL02481___ywr   1186 AAAAGAACTTTTCATACGCTGATGCCCGCCATGGCGTTTAGAGGCGGCAA   1235

BSNT_05506___   1236 GCCAAAAATTCTGTACGGCAC------ACAAGGCGGCGAAGGCCAGCCGC   1279
                     |||.|||.|.||.|||||.||      .|||||.||.|||||.|||||||
BL02481___ywr   1236 GCCGAAATTCCTTTACGGAACGCAAGGGCAAGGGGGAGAAGGACAGCCGC   1285

BSNT_05506___   1280 AGACCCAGACGGCCATCATTACCCGAATGCTGGACTACGGAATGCATCC-   1328
                     ||||.||||||||..|.|||||..|||||.|.||.|||||.|||.|||| 
BL02481___ywr   1286 AGACGCAGACGGCTCTTATTACGAGAATGGTAGATTACGGGATGGATCCG   1335

BSNT_05506___   1329 ---ACAGCAGGCAATTAGCGAACCGCGCTGGGTATGGGGCAGAACGTGGG   1375
                        |||||.|    ||...||||||.|.|||||||||||||||||.||||
BL02481___ywr   1336 CAAACAGCTG----TTCATGAACCGAGATGGGTATGGGGCAGAACATGGG   1381

BSNT_05506___   1376 GAGAGGAATAC-----GAAGGTCTCAGAGTCGAGGGCAGATTCACAGAC-   1419
                     |||||     |     ||||||.|.|||.|.||..|||||.|..| |.| 
BL02481___ywr   1382 GAGAG-----CGGGTGGAAGGTGTAAGAATAGAAAGCAGAGTGGC-GCCT   1425

BSNT_05506___   1420 -AAAACAATCCAAAAACTGAAAGACAGC--GGGCATCTCGTGGAGGTTGT   1466
                      ||...|.|.| |||||||  .||.|||  |||||||..||....|||||
BL02481___ywr   1426 GAAGTGATTGC-AAAACTG--CGAAAGCATGGGCATCATGTAACCGTTGT   1472

BSNT_05506___   1467 CGGTGACTATGATCCGCTGATGGGACAAG-CGGCTGCAATCA---AAGTT   1512
                     ||||||.|.|||...|.|||||||.||.| |||    |||||   |..||
BL02481___ywr   1473 CGGTGAATTTGACGGGGTGATGGGTCATGCCGG----AATCATTGAGATT   1518

BSNT_05506___   1513 GATGAAGAAGGCTTTCT-CCAAGGCGGAGCCGATCCTCGGGGAGACGGAG   1561
                     ||.||..|||||||.|| ..|.||.|||| ||||||..|..|.||.||.|
BL02481___ywr   1519 GACGATCAAGGCTTCCTGAGAGGGGGGAG-CGATCCGAGAAGCGATGGGG   1567

BSNT_05506___   1562 CGGCTGTGGGGATATAA   1578
                     |.||..|.||.||.|||
BL02481___ywr   1568 CAGCAATCGGCATTTAA   1584


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