Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05486 and BL02479

See Amino acid alignment / Visit BSNT_05486 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:38
# Commandline: needle
#    -asequence dna-align/BSNT_05486___alsD.1.5803.seq
#    -bsequence dna-align/BL02479___alsD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05486___alsD-BL02479___alsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05486___alsD-BL02479___alsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05486___alsD
# 2: BL02479___alsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 816
# Identity:     548/816 (67.2%)
# Similarity:   548/816 (67.2%)
# Gaps:         102/816 (12.5%)
# Score: 1749.5
# 
#
#=======================================

BSNT_05486___      1 ATGAAACGAGAAAGC-AACATTCAAGTGCTCAGACGCGGTCAAAAAGA--     47
                     ||||||.|.|.|||| ||||                     |||||.|  
BL02479___als      1 ATGAAAAGTGCAAGCAAACA---------------------AAAAATAAT     29

BSNT_05486___     48 TCAGCCTGT-------------GAGCCAGATTTATCAAGTATCAACAATG     84
                     ||||||.||             ||.|.|| |.|||||.||.|||||.|||
BL02479___als     30 TCAGCCCGTTGATAAGAACCTCGATCAAG-TCTATCAGGTCTCAACGATG     78

BSNT_05486___     85 ACTTCTCTATTAGACGGAGTATATGACGGAGATTTTGAACTGTCAG-AGA    133
                     ...|||.||||.||||||.|.||.|||||.||||||.|..||||.| || 
BL02479___als     79 GTATCTTTATTGGACGGAATTTACGACGGGGATTTTTATATGTCCGAAG-    127

BSNT_05486___    134 TTCCGA---AATATGGAGACTTCGGTATCGGAACCTTTAACAAGCTTGAC    180
                        |||   |..|.|||||||||||.||||||||.||.|||..|||.|||
BL02479___als    128 ---CGAAGGAGCACGGAGACTTCGGGATCGGAACGTTCAACCGGCTCGAC    174

BSNT_05486___    181 GGAGAGCTGATTGGGTTTGACGGCGAATTTTACCGTCTCCGTTCAGACGG    230
                     ||.||||||||.||.||||||||.||.|||||||||||||||||.||.||
BL02479___als    175 GGCGAGCTGATCGGTTTTGACGGTGAGTTTTACCGTCTCCGTTCCGATGG    224

BSNT_05486___    231 AACCG-CGACACCGGTCCAA--AACGGGGATCGTTCTCCGTTCTGTTCAT    277
                     ||..| |.|| ||.||.|||  ||  |.|||.|||||||.||.||.||..
BL02479___als    225 AAAAGCCTAC-CCAGTTCAAGGAA--GCGATTGTTCTCCATTTTGCTCGC    271

BSNT_05486___    278 TTACGTTCTTTACACCGGACATGACGCACAAAAT--------TGATGCGA    319
                     |..|.|||||....|||||.||....|||.||||        .|||||  
BL02479___als    272 TGGCTTTCTTCCGGCCGGATATCTATCACGAAATCAAGCAGCGGATGC--    319

BSNT_05486___    320 AAATGACACGC--GAAGACTTTGAAAAAGAGATCAACAGCATGCTGCCAA    367
                             |||  ||.|..||.|||.||||.||.||..|.||..||||.|
BL02479___als    320 --------CGCTTGAGGCGTTCGAAGAAGAAATGAAACGGATCATGCCGA    361

BSNT_05486___    368 GCAGAAACTTATTTTATGCAATTCGTATTGACGGATTGTTTAAAAAGGTG    417
                     |...||||.|.|||||.||.|||||.||.||||||...|||||.||.||.
BL02479___als    362 GTGAAAACCTGTTTTACGCGATTCGCATGGACGGAACCTTTAAGAAAGTC    411

BSNT_05486___    418 CAGACAAGAACGGTAGAACTTCAAGAAAAACCTTACGTGCCAATGGTTGA    467
                     .|.||.|||||.||.||||||||.||||||||.||.|||||.||||||||
BL02479___als    412 AAAACGAGAACAGTTGAACTTCAGGAAAAACCGTATGTGCCGATGGTTGA    461

BSNT_05486___    468 AGCGGTCAAAACACAGCCGAT-TTTCAACTTCGACAACGTGAGA-----G    511
                     .|||||.|||.|||||||||| |||.|..||    ||  |||.|     |
BL02479___als    462 TGCGGTAAAATCACAGCCGATCTTTGATTTT----AA--TGATATTACGG    505

BSNT_05486___    512 GAACAATCGTAGGTTTCTTGACACCAGC-TTATGCAAACGGAATCGCCGT    560
                     |.||.|||||.||.||.|.|||||| || .|||||.|||||||||||.||
BL02479___als    506 GGACGATCGTCGGCTTTTGGACACC-GCAATATGCCAACGGAATCGCAGT    554

BSNT_05486___    561 TTCAGGCTATCACCTGCACTTCATTGACGAAGGACGCAAT-TCAGGCGGA    609
                     |||.||||..||.||.|||||.||.||.||||..|||||| || ||||||
BL02479___als    555 TTCCGGCTTCCATCTTCACTTTATAGATGAAGACCGCAATGTC-GGCGGA    603

BSNT_05486___    610 CACGTTTTTGACTATGTGCTTGAGGATTGCACGGTTACGATTTCTCAAAA    659
                     ||||||||.||.||||...|.||.||.||||||||....|||||||||||
BL02479___als    604 CACGTTTTCGATTATGAAATCGAAGAATGCACGGTGCAAATTTCTCAAAA    653

BSNT_05486___    660 AATGAACATGAATCTCAGACTTCCGAACACAGC-GGATTTCTTTAATGCG    708
                     |.|.||.|||||.||||||.|.|||||.|| || .|||||||||.|.|||
BL02479___als    654 ACTCAATATGAACCTCAGATTGCCGAATAC-GCAAGATTTCTTTCAAGCG    702

BSNT_05486___    709 AATCTGGATAACCCTGATTTTGC-----GAAAGATATCGAAACAACTGAA    753
                     .||.|..||||.|..|||.||||     ||     ||.|||.|..|.|||
BL02479___als    703 GATTTCAATAAACACGATCTTGCAGCCGGA-----ATTGAAGCGGCCGAA    747

BSNT_05486___    754 GG-AAGCCCTGAATAA    768
                     || ||.||| ||.|||
BL02479___als    748 GGCAATCCC-GAGTAA    762


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