Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05486 and BL02479
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:38
# Commandline: needle
# -asequence dna-align/BSNT_05486___alsD.1.5803.seq
# -bsequence dna-align/BL02479___alsD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05486___alsD-BL02479___alsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05486___alsD-BL02479___alsD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05486___alsD
# 2: BL02479___alsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 816
# Identity: 548/816 (67.2%)
# Similarity: 548/816 (67.2%)
# Gaps: 102/816 (12.5%)
# Score: 1749.5
#
#
#=======================================
BSNT_05486___ 1 ATGAAACGAGAAAGC-AACATTCAAGTGCTCAGACGCGGTCAAAAAGA-- 47
||||||.|.|.|||| |||| |||||.|
BL02479___als 1 ATGAAAAGTGCAAGCAAACA---------------------AAAAATAAT 29
BSNT_05486___ 48 TCAGCCTGT-------------GAGCCAGATTTATCAAGTATCAACAATG 84
||||||.|| ||.|.|| |.|||||.||.|||||.|||
BL02479___als 30 TCAGCCCGTTGATAAGAACCTCGATCAAG-TCTATCAGGTCTCAACGATG 78
BSNT_05486___ 85 ACTTCTCTATTAGACGGAGTATATGACGGAGATTTTGAACTGTCAG-AGA 133
...|||.||||.||||||.|.||.|||||.||||||.|..||||.| ||
BL02479___als 79 GTATCTTTATTGGACGGAATTTACGACGGGGATTTTTATATGTCCGAAG- 127
BSNT_05486___ 134 TTCCGA---AATATGGAGACTTCGGTATCGGAACCTTTAACAAGCTTGAC 180
||| |..|.|||||||||||.||||||||.||.|||..|||.|||
BL02479___als 128 ---CGAAGGAGCACGGAGACTTCGGGATCGGAACGTTCAACCGGCTCGAC 174
BSNT_05486___ 181 GGAGAGCTGATTGGGTTTGACGGCGAATTTTACCGTCTCCGTTCAGACGG 230
||.||||||||.||.||||||||.||.|||||||||||||||||.||.||
BL02479___als 175 GGCGAGCTGATCGGTTTTGACGGTGAGTTTTACCGTCTCCGTTCCGATGG 224
BSNT_05486___ 231 AACCG-CGACACCGGTCCAA--AACGGGGATCGTTCTCCGTTCTGTTCAT 277
||..| |.|| ||.||.||| || |.|||.|||||||.||.||.||..
BL02479___als 225 AAAAGCCTAC-CCAGTTCAAGGAA--GCGATTGTTCTCCATTTTGCTCGC 271
BSNT_05486___ 278 TTACGTTCTTTACACCGGACATGACGCACAAAAT--------TGATGCGA 319
|..|.|||||....|||||.||....|||.|||| .|||||
BL02479___als 272 TGGCTTTCTTCCGGCCGGATATCTATCACGAAATCAAGCAGCGGATGC-- 319
BSNT_05486___ 320 AAATGACACGC--GAAGACTTTGAAAAAGAGATCAACAGCATGCTGCCAA 367
||| ||.|..||.|||.||||.||.||..|.||..||||.|
BL02479___als 320 --------CGCTTGAGGCGTTCGAAGAAGAAATGAAACGGATCATGCCGA 361
BSNT_05486___ 368 GCAGAAACTTATTTTATGCAATTCGTATTGACGGATTGTTTAAAAAGGTG 417
|...||||.|.|||||.||.|||||.||.||||||...|||||.||.||.
BL02479___als 362 GTGAAAACCTGTTTTACGCGATTCGCATGGACGGAACCTTTAAGAAAGTC 411
BSNT_05486___ 418 CAGACAAGAACGGTAGAACTTCAAGAAAAACCTTACGTGCCAATGGTTGA 467
.|.||.|||||.||.||||||||.||||||||.||.|||||.||||||||
BL02479___als 412 AAAACGAGAACAGTTGAACTTCAGGAAAAACCGTATGTGCCGATGGTTGA 461
BSNT_05486___ 468 AGCGGTCAAAACACAGCCGAT-TTTCAACTTCGACAACGTGAGA-----G 511
.|||||.|||.|||||||||| |||.|..|| || |||.| |
BL02479___als 462 TGCGGTAAAATCACAGCCGATCTTTGATTTT----AA--TGATATTACGG 505
BSNT_05486___ 512 GAACAATCGTAGGTTTCTTGACACCAGC-TTATGCAAACGGAATCGCCGT 560
|.||.|||||.||.||.|.|||||| || .|||||.|||||||||||.||
BL02479___als 506 GGACGATCGTCGGCTTTTGGACACC-GCAATATGCCAACGGAATCGCAGT 554
BSNT_05486___ 561 TTCAGGCTATCACCTGCACTTCATTGACGAAGGACGCAAT-TCAGGCGGA 609
|||.||||..||.||.|||||.||.||.||||..|||||| || ||||||
BL02479___als 555 TTCCGGCTTCCATCTTCACTTTATAGATGAAGACCGCAATGTC-GGCGGA 603
BSNT_05486___ 610 CACGTTTTTGACTATGTGCTTGAGGATTGCACGGTTACGATTTCTCAAAA 659
||||||||.||.||||...|.||.||.||||||||....|||||||||||
BL02479___als 604 CACGTTTTCGATTATGAAATCGAAGAATGCACGGTGCAAATTTCTCAAAA 653
BSNT_05486___ 660 AATGAACATGAATCTCAGACTTCCGAACACAGC-GGATTTCTTTAATGCG 708
|.|.||.|||||.||||||.|.|||||.|| || .|||||||||.|.|||
BL02479___als 654 ACTCAATATGAACCTCAGATTGCCGAATAC-GCAAGATTTCTTTCAAGCG 702
BSNT_05486___ 709 AATCTGGATAACCCTGATTTTGC-----GAAAGATATCGAAACAACTGAA 753
.||.|..||||.|..|||.|||| || ||.|||.|..|.|||
BL02479___als 703 GATTTCAATAAACACGATCTTGCAGCCGGA-----ATTGAAGCGGCCGAA 747
BSNT_05486___ 754 GG-AAGCCCTGAATAA 768
|| ||.||| ||.|||
BL02479___als 748 GGCAATCCC-GAGTAA 762
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