Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03295 and BL02472
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_03295___kdgR.1.5803.seq
# -bsequence dna-align/BL02472___kdgR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03295___kdgR-BL02472___kdgR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03295___kdgR-BL02472___kdgR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03295___kdgR
# 2: BL02472___kdgR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1104
# Identity: 720/1104 (65.2%)
# Similarity: 720/1104 (65.2%)
# Gaps: 171/1104 (15.5%)
# Score: 2225.5
#
#
#=======================================
BSNT_03295___ 1 ATGA---AAAAGAAAACAACAGGCCATA-CAACCATCAAAGATGTAGCTG 46
|||| |.|||.||||| ||.|.| .|||||||||.||.||.||.|
BL02472___kdg 1 ATGAAGGATAAGCAAACA----GCGAAAGTAACCATCAACGAAGTCGCCG 46
BSNT_03295___ 47 AATGTGCAGGAGTTTCGAAATCGACAGTTTCCCGCTATATTAACGGAAAA 96
.|..||||||.||.||.|||||.||.||||||||.|||||.|||||.||.
BL02472___kdg 47 CACATGCAGGCGTATCAAAATCAACGGTTTCCCGTTATATCAACGGGAAG 96
BSNT_03295___ 97 ATTGACGCGATTTCTCCTGAAAAA-GTGAAAAACATTAAAAAGGCAATCG 145
|||||.||.|||||.|| |||||| |||||||.|||.|||||.||.||||
BL02472___kdg 97 ATTGATGCCATTTCACC-GAAAAAGGTGAAAAGCATCAAAAAAGCGATCG 145
BSNT_03295___ 146 CAGAATTGAATTATCGGCCGAGTAAAATGGCACAAGGTTTGAAAATAAAA 195
..||..|.|||||.||.||.||..|.||||||||.||..||||..|.|||
BL02472___kdg 146 AGGAGCTCAATTACCGCCCAAGCCAGATGGCACAGGGGCTGAAGGTGAAA 195
BSNT_03295___ 196 AAAAGC-AAGTTAATCGGATTTGTTGTGGCTGACATTACAAATCCTTTTT 244
|||||| ||||| |||||||||.|.||.||.||.||||||||.||.||||
BL02472___kdg 196 AAAAGCAAAGTT-ATCGGATTTTTGGTCGCCGATATTACAAACCCGTTTT 244
BSNT_03295___ 245 CGGTCGCTGCTTTCAGGGGAGTCGAAGAGGTTTGTGATCAATATGGATAC 294
|.||.||..|.||.||.||.||.|||||||||||.|||||.||.||||||
BL02472___kdg 245 CAGTAGCCACCTTGAGAGGGGTGGAAGAGGTTTGCGATCAGTACGGATAC 294
BSNT_03295___ 295 AGCATTATGGTGTGCAACACAGATAACAGTCCTGAAAAAGAGCGGGAAAT 344
|||||.|||||.||||||||.||.|||||||||||.|||||..||||.||
BL02472___kdg 295 AGCATCATGGTCTGCAACACGGACAACAGTCCTGAGAAAGAAAGGGAGAT 344
BSNT_03295___ 345 GCTCTTAAAGCTAGAA-GCCCATTCGGTTG-AGGGCTTGATT-TTAA-AC 390
|||....||||| ||| ||.||||...||| ||||| ||||| |||| ||
BL02472___kdg 345 GCTGCACAAGCT-GAACGCGCATTACATTGAAGGGC-TGATTATTAATAC 392
BSNT_03295___ 391 GCAACGGGGGAA--AACAAGGATGTACTGCGCGCTTTTG---CTGAACAG 435
| || ||||| |||||.||||| |||.||| .|.|.|||
BL02472___kdg 393 G--AC--GGGAAGGAACAACGATGT-------GCTCTTGGATTTAATCAG 431
BSNT_03295___ 436 CAA----------ATTCCAACAATCTTAATTGACCGGAAACTGCCGGATC 475
|.| ||| .|..|..|||||||||||.||||.|..|
BL02472___kdg 432 CCAGGATGTATCGATT------GTGCTCGTTGACCGGAAAGTGCCCGGGC 475
BSNT_03295___ 476 TGAAACTGGATACCGTAACGACTGACAACAGATGGA--TCACAAAAGAGA 523
|.||..|.|||.|.||.||.||..|||||.| .|| |.||||...|.|
BL02472___kdg 476 TCAAGATCGATGCAGTCACAACGAACAACCG--CGAAGTGACAAGTCAAA 523
BSNT_03295___ 524 T------TCTTCAGAAGGTTTACAGCAAAGGGTATACTGATGTCGCGCTG 567
| || ||| |.||...||||||.|||.|..|.||||..|||
BL02472___kdg 524 TCGTCAATC-TCA-----TGTATGACAAAGGCTATGCCCAGGTCGGTCTG 567
BSNT_03295___ 568 TTTACCGAACCGATTTCCTCTATCAGCCCTCGTGCAGAAAGAGCAGCTGT 617
|||||||||||||||......|||||.|| |||.|
BL02472___kdg 568 TTTACCGAACCGATTAAGGGAATCAGTCC---------AAGGG------- 601
BSNT_03295___ 618 GTATCAGGAAATGGCTTCCG----TTCAAAA-------TGTGAACG---- 652
||||||.|||.|||| |.||.|| || |||||
BL02472___kdg 602 -----AGGAAAGGGCCTCCGCCTATACAGAAATCGCGCTG-GAACGAAAC 645
BSNT_03295___ 653 ------GG----CTTGTCAGATTGCATGAAATTGACGTAAAGGACAAGGA 692
|| |.|.||..|| ||||...||||||.||.||||| |
BL02472___kdg 646 GCCGGCGGTACCCCTCTCGTAT---ATGAGGCTGACGTCAAAGACAA--A 690
BSNT_03295___ 693 GCAGC----TTA-AGGCGGCGCTTCGT-----TCTTTTCACAAGGAAATG 732
|.|.| ||| || |.||| .||||| .|||||||
BL02472___kdg 691 GAATCTCTATTACAG-------TCCGTCAAAAGCTTTT----TGGAAATG 729
BSNT_03295___ 733 CCGGAGCAA-------AAAAAAGCGATTCTGGCTTTGAA-----TGGCTT 770
|| ||||||||.||| |||.||| .|||||
BL02472___kdg 730 -------AAAGAAGGGAAAAAAGCCATT----CTTGGAAACAACGGGCTT 768
BSNT_03295___ 771 GATTATGCTGAAAATCATCAGCTG----TATGGAAGAGCTTGGCCTGCGC 816
.|.|||||||||||||||||||| ||| |||||||||.|....
BL02472___kdg 769 -CTGATGCTGAAAATCATCAGCTGCCTTTAT----GAGCTTGGCATTTCA 813
BSNT_03295___ 817 ATCCCTCAAGATATAGGGATTGCAGGATTCGATGATACGGAGTGGTACAA 866
||.||..|||||.|.||.|||||.|||||.||||||||.||.|||||.||
BL02472___kdg 814 ATTCCGGAAGATGTCGGAATTGCCGGATTTGATGATACAGAATGGTATAA 863
BSNT_03295___ 867 ACTGATCGGTCCAGGCATTACAACGATCGCCCAGCCGTCACATGATATGG 916
|.||||||||||.||||||||.||.||||||||||||||.|||||.||||
BL02472___kdg 864 ATTGATCGGTCCGGGCATTACGACCATCGCCCAGCCGTCGCATGAAATGG 913
BSNT_03295___ 917 GCAGGACGGCGATGGAACGTGTATTAAAAAGGATTGATGGTGACAAAGGA 966
|||||...||.|||||.||..|..|.|||.|||||||.||.|||.||.|.
BL02472___kdg 914 GCAGGGTCGCCATGGAGCGGATCATCAAACGGATTGAAGGAGACGAAAGC 963
BSNT_03295___ 967 GCGCCTCAAACCATTGAATTAGAGGCAAAAGTCATCATGAGAAAGTCACT 1016
||.||.||.||.|||.|..|.|||||..|..|..|..|.|||.||||.||
BL02472___kdg 964 GCCCCGCAGACGATTCAGCTTGAGGCGGAGCTTGTTCTCAGACAGTCGCT 1013
BSNT_03295___ 1017 TTAA 1020
.||.
BL02472___kdg 1014 GTAG 1017
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