Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05456 and BL02465
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:36
# Commandline: needle
# -asequence dna-align/BSNT_05456___lytD.1.5803.seq
# -bsequence dna-align/BL02465___lytD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05456___lytD-BL02465___lytD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05456___lytD-BL02465___lytD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05456___lytD
# 2: BL02465___lytD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2970
# Identity: 1721/2970 (57.9%)
# Similarity: 1721/2970 (57.9%)
# Gaps: 666/2970 (22.4%)
# Score: 4239.5
#
#
#=======================================
BSNT_05456___ 1 ATGAAAAA---GAGACTAATCG-CACCTATGCTTCTATCCGCCGCGTCCC 46
.||||||| .|||..||.|| .|..|.||||.|.|||
BL02465___lyt 1 GTGAAAAACATTAGAAAAACCGTTATTTTTGCTGCAATC----------- 39
BSNT_05456___ 47 TTGCCTTTTTTGC-----CATATCTGGTTCTGCCCAGGC----------- 80
.|||||| |||| .|| |.|.||.|||
BL02465___lyt 40 ------ATTTTGCTCGTACATA--CGG--CAGTCCCGGCAATTCCTGCTT 79
BSNT_05456___ 81 -AGCCGCGTATACCGACTAC-TCACTATATCAAGTAGAGCCGTCGAATAC 128
|||.||.|||||||| ||| ||..|.||..||.|.||..|..|.||...
BL02465___lyt 80 TAGCAGCATATACCGA-TACTTCCGTCTACAAAATTGAAACAGCAAAAGA 128
BSNT_05456___ 129 GTTCAGTACAGAAAGCCAAGC-CTCACAAGCTGTCGCCAAACTGGAAAAA 177
|||.|.||..||||||.|||| |||| ||||.|.||...|||||.||||.
BL02465___lyt 129 GTTTAATAGCGAAAGCGAAGCGCTCA-AAGCAGCCGAACAACTGAAAAAG 177
BSNT_05456___ 178 GATACTGGCTGGGATGC--------ATCCTATCAGG------CTTCAGGC 213
||.||.||.|||.|.|| |.||| ||||| | |||
BL02465___lyt 178 GACACGGGATGGAAAGCCGAGGTCAAACCT-TCAGGGAAAAAC----GGC 222
BSNT_05456___ 214 ACAACA-ACGACCTACCAAATTTCCGCCTCAGGCATTCATAGCGA-ATCA 261
|||||| ||| ||| .|| ||||
BL02465___lyt 223 ACAACATACG----------TTT-------------------TGACATCA 243
BSNT_05456___ 262 GAAG----CGAA-----------AGCAATA---CTG----AGCGGACTCG 289
|||| |||| |||||.| ||| .||.|..|
BL02465___lyt 244 GAAGGTGTCGAAGGGGAGAGCAGAGCAAAAAATCTGCTTTTGCAGTTT-- 291
BSNT_05456___ 290 CCAAACAGACATCGATTACAGGAA--CGTC---AAGTCCTGTTGGAAGCA 334
.|||.|||.|.||.|| .||| |||| ..||||..||||||..|
BL02465___lyt 292 -GAAAAAGAAACCGGTT---TGAAGGCGTCCTATGGTCCGATTGGAAAAA 337
BSNT_05456___ 335 AACAGCCATATGTCACCATCTCG---TC--AGGTGCCATCT-CCGGAGAA 378
||.|.||.| |..|||...|| || ||| .||.| ||||.|||
BL02465___lyt 338 AAGAACCGT---TTTCCAAAGCGGTATCAAAGG---AATTTGCCGGTGAA 381
BSNT_05456___ 379 AAACAGGCCAA-CACTG-----TCCTAGCAAAGCTGAAACAGGAGACGGG 422
.||.|.||||| .|.|| ||| ||..|||||.||.|..|||
BL02465___lyt 382 GAAAAAGCCAAGGAATGGGCGCTCC-----AATTTGAAAAAGAAACCGG- 425
BSNT_05456___ 423 AGTGGCTGGCGCTGTAA--AAGCT-TAC--------GGAGCAGCTCAGCC 461
.|||.|| ||.|| ||| |||.|||...|||
BL02465___lyt 426 ----------TCTGAAAGCAACCTATACACTTGCAGGGAACAGGGAAGC- 464
BSNT_05456___ 462 CTATA--TGAACGTCATGACATC--AGACATTGCTGATG-AGACAAAAGT 506
||| ||||.|| ||.||.| ||..||.|..|..| ||||||.|..
BL02465___lyt 465 --ATACGTGAAGGT--TGCCACCGGAGGAATCGAAGGCGAAGACAACACG 510
BSNT_05456___ 507 CAAGGCGCTTATCC-AGAACCTGGCCAAGCAAACGG---GGATTAAAAGC 552
.|||.| |||| .||.|.|...||| |||..| ||..|.|||||
BL02465___lyt 511 AAAGCC----ATCCTCGATCGTTTTCAA--AAAGCGACCGGCCTCAAAGC 554
BSNT_05456___ 553 -TCGTATCAGC-CCATCACACACACGGTGTCTGTCACAACCATTCGTTCT 600
|||||| || |||| ||||.| .|..||||.|..||||
BL02465___lyt 555 GTCGTAT--GCACCAT-------ACGGAG--CGGGACAAGCGATCGT--- 590
BSNT_05456___ 601 GGCACAATCGTGGGAGACAGCAGAGCAGCGCAGAT-----CAA----AAA 641
|||.|.| .|..|.||||| .|.||||||| ||| |||
BL02465___lyt 591 ----CAAGCTT--TATTCTGCAGA-AATCGCAGATGAGAGCAAAGCGAAA 633
BSNT_05456___ 642 AGCCT-----TCC------AAAAGGAATCGGGGCTGAAGGCATCATTAAA 680
||||| ||| ||||.|||.||| .|.|||||
BL02465___lyt 634 AGCCTGCTTGTCCAGTTTGAAAAAGAAACGG-----------CCCTTAAA 672
BSNT_05456___ 681 GGAA--------ACAGT---GAAAGGACAAGCCT-ATTATACGTTCACAA 718
|||| ||.|| ||||..|| ||||| |.||| |.||
BL02465___lyt 673 GGAACGATAGAGACCGTAAAGAAACAAC-AGCCTAAATAT------AAAA 715
BSNT_05456___ 719 CTGCTGCCATTTC------AGGTGAAGCGAATGCCAAGACTCTATTGCAG 762
.|||..|.|.||| |||.|||.|.||.||.||.|..||..||.||
BL02465___lyt 716 TTGCGACAAGTTCGATACAAGGCGAAACAAACGCGAAAAACCTGCTGAAG 765
BSNT_05456___ 763 CAG-CTGAAACAGAGCACTGGCATCACAGGCAGCTACAAGTCCATCAATC 811
||| .|||||.||||| |||.|| ||
BL02465___lyt 766 CAGTTTGAAAAAGAGC-------TCAAAG-------------------TC 789
BSNT_05456___ 812 AAA----------AAACAACCGTTGAGTC---------ATACAATGTCCA 842
||| ||.|..|||.|.||.| |||||||||..|
BL02465___lyt 790 AAAGGGGCATATGAAGCCGCCGGTCAGCCGGCACAGCTATACAATGTGAA 839
BSNT_05456___ 843 ATCAGCTTATTTCAAAGGCCTGAATACAG-----TAAAGGACGCCATCAG 887
|||.|..|||||.||.|.| |||.|.|| .|||.|.||| |.|
BL02465___lyt 840 ATCGGGATATTTTAATGAC--GAAAAGAGCGCGAAAAATGCCGC---CGG 884
BSNT_05456___ 888 CCAGATCAAGAAAAACACCGGTGTATCCGGCAGTTATC--------AACA 929
.||.||.||.||.||.||||||.|..|| || ||.|
BL02465___lyt 885 ACAAATTAAAAAGAAAACCGGTCTCGCC--------TCAAGCACGGAAAA 926
BSNT_05456___ 930 GGTTGGAAAAAG---CAC--------ATCATATACCGTGAATATGAAGGG 968
||| ||||| ||| |||.|| |.|.|||| |||.|
BL02465___lyt 927 GGT----AAAAGGTACACGCTTCTGGATCGTA-AGCATGAA----AAGCG 967
BSNT_05456___ 969 GATA---ACAAAACAGCAGCTCCAAAAAGTAGATACTTTCTTTAAAAAGA 1015
.|.| .|||||| |||.|||||.|.||..|.||.||.|||||||
BL02465___lyt 968 TAGACAGTCAAAAC-----CTCAAAAAAATCGACGCCTTTTTCAAAAAGA 1012
BSNT_05456___ 1016 AAAAATGGCATTATACGTCATCCA---GCGTCAAAAAA----ACAAC--- 1055
|||..||||.|||||| |..|.|| |||...||||| |||.|
BL02465___lyt 1013 AAACGTGGCGTTATAC-TGCTGCAAAGGCGGGGAAAAAGCAGACATCTTT 1061
BSNT_05456___ 1056 ----AACGTCTGCG----GCTTACCAAATCACGACAGCCAAGATGTTAGG 1097
|.|||.|.|| |||| .||.|||| ||
BL02465___lyt 1062 CAGAATCGTTTCCGTCCCGCTT-TCAGATCA--------AA--------- 1093
BSNT_05456___ 1098 CGAGCAGCAAGCAAACAAAGCAGCAGCC--TTCTTTGCTCAGAAAAAAGT 1145
||.||||||||.|.| |||.|| ||.||| |||||..
BL02465___lyt 1094 -----AGAAAGCAAACGATG--GCATCCGGTTTTTT-------AAAAACA 1129
BSNT_05456___ 1146 AAAA-------GC-----CACAAA--AACAGCAGCTGGATCAACAGCAGA 1181
|||| || |.|||| |.|.|||||..||.|..||||
BL02465___lyt 1130 AAAATATTCAGGCTTCTGCGCAAAGCACCGGCAGCACGACCGTCAGC--- 1176
BSNT_05456___ 1182 AAATCAATATCAGCTCATC---------TCAGAAGAAACATCAGATCAAG 1222
|.|.|| ||.|..|||||..|.|.|||||
BL02465___lyt 1177 -------------CGCTTCCGGATTGCGTCTGCTGAAACCGCCGTTCAAG 1213
BSNT_05456___ 1223 CAAAAGTC-ACAAAGGGTTTGAACATATTAAAGAAAAATCAGCTGAGTGC 1271
|...|.|| |.||||||.||||| .|.||.|||||||| ..||||
BL02465___lyt 1214 CGCGAATCAATAAAGGGCTTGAA-TTCTTTAAGAAAAA------CGGTGC 1256
BSNT_05456___ 1272 TTCTGCGAA-ATCCG--TCAA----AAAACAA----ATAGCTGACACGTT 1310
..| |.||| ..||| |||| ||||.|| |.||| ||| |.
BL02465___lyt 1257 GGC-GGGAACGGCCGGATCAACAGGAAAAAAAGTGTACAGC---CAC-TA 1301
BSNT_05456___ 1311 TAAAATCACAACCGAATCTCTGTTTGACCA-AACGAAAGTCAATCAGGCA 1359
|.|..|.|||||.|||||..|.|..||.|| ||| |||||.|..|||||.
BL02465___lyt 1302 TCAGCTGACAACGGAATCCGTATACGAACAGAAC-AAAGTGACGCAGGCG 1350
BSNT_05456___ 1360 CTCACGTTTTTCAAATCGAATCA--TATATCA-GCAGCAAGCC-AGAAAA 1405
||||..||.||.||| |||.|| .|| ||| |||| |.||| .|||.|
BL02465___lyt 1351 CTCAATTTCTTTAAA--GAAACAGGCAT-TCACGCAG-AGGCCGTGAAGA 1396
BSNT_05456___ 1406 CCGGTCA----GACAGCTGCGAGCAGCTATCAAA-TCACAACTGAAGCTA 1450
||||.|| .|||||.||.| |||| |.|...|.||||||.
BL02465___lyt 1397 CCGGCCAATATTACAGCCGCTA--------CAAACTGAGTTCGGAAGCTC 1438
BSNT_05456___ 1451 TCATCAGCCAAGAAGAGATTGAC------CGCGTTTTAACATTTTTCAAA 1494
|.|||.||...|||.| ||| || ||| |...||||||| |.
BL02465___lyt 1439 TGATCGGCACGGAACA-ATT-ACAGCAGGCGC----TCGGATTTTTC-AG 1481
BSNT_05456___ 1495 CAA----AATCATATCGCAGTCACAACAT--CAAAAACAGGCCAG-ACAG 1537
||| ||| |||.|| ..|||.|| .|.||||.||..|| ||.|
BL02465___lyt 1482 CAAGCGGAAT-ATACCG----GGCAAGATTGAACAAACGGGTGAGTACGG 1526
BSNT_05456___ 1538 CATATACA--CAATACAAAATC--GTGACAACA---CAGCTCAGCAGCAA 1580
| |||| ||.||| | |||||.||| |...|||..|||||
BL02465___lyt 1527 C---TACAGGCAGTAC-----CGGGTGACGACAGGTCGAATCACAAGCAA 1568
BSNT_05456___ 1581 AACAGCAT-TGAATAATGGGTT-AACCTATC-TTAAATCGAAAAGTGTAA 1627
|.||| || |..|.||.||.|| || |.|| ||||...|||.|.|||.|
BL02465___lyt 1569 AGCAG-ATCTCGACAAGGGCTTGAA--TGTCTTTAAGAAGAACAATGTCA 1615
BSNT_05456___ 1628 CCCCTAGCTATAC--AACGAAAAGCAATACG------CTTTATAAAATCA 1669
.|.| |.|| ||| ||| |||| ||| ||.|.|.|.|||
BL02465___lyt 1616 GCGC-AACT-TACCAAAC--AAAG----ACGGTCAGCCTGTTTCATATC- 1656
BSNT_05456___ 1670 GCG-TAAATGAGCAGTTCACAGGCAATGA---TACAGCTGCTGCGGCATC 1715
.|| |.|||||.||.||.|||||.||.|| |.|.|.||||||.|| |
BL02465___lyt 1657 TCGATCAATGAACAATTTACAGGGAAAGACCGTGCGGATGCTGCCGC--C 1704
BSNT_05456___ 1716 AA-CGAAGCTAAAAC-AATTATACGGATGGAC-----ATCATCTATCGTG 1758
|| ||.|.| ||||| ||| |||||.|||.| | |.||||.
BL02465___lyt 1705 AATCGGATC-AAAACGAAT--TACGGCTGGCCGGTGAA-----TGTCGTC 1746
BSNT_05456___ 1759 AAGATCAAAAACGGTCCGCAAATCATGAAAACAAATTAC--AATCTCTCG 1806
||..|.||||||||.||||||||||..|..||..|.||| || ||.||
BL02465___lyt 1747 AAAGTGAAAAACGGCCCGCAAATCACAACGACTGACTACGGAA--TCACG 1794
BSNT_05456___ 1807 CTTCGTGATATGGTCCAAAAACAAATGACAGTAAGTCCGCAAACAGACGG 1856
||..|..|.|||.||.|.|||||.||||.|||.||.||||||||.||.|.
BL02465___lyt 1795 CTCAGCCAGATGATCGATAAACAGATGAAAGTCAGCCCGCAAACGGATGC 1844
BSNT_05456___ 1857 AGCGGCTTACGTATCGCTCACGTACATTAATACAGC--AACATCAACCGT 1904
..|||||||.||.||..|.|..|||||.|||||.|| |.|| ||||||
BL02465___lyt 1845 GCCGGCTTATGTTTCATTGAGCTACATCAATACGGCGAACCA--AACCGT 1892
BSNT_05456___ 1905 TACGGCTGACGTACTAAATATCCGGTCAACGCCGGAAGTCAGCCC----G 1950
.||||||||..|.||.||||||.|||||| ||| ||| |
BL02465___lyt 1893 CACGGCTGATCTGCTGAATATCAGGTCAA-GCC---------CCCTTGTG 1932
BSNT_05456___ 1951 ACA------AACGTGATCGGCCAATTTAAAAAAGGCGATAAAGTGAAAAT 1994
||| |||.|.|||||.||..|..|||||||.||||||||.||.||
BL02465___lyt 1933 ACAGGCGGCAACATCATCGGACAGCTGCAAAAAGGGGATAAAGTCAACAT 1982
BSNT_05456___ 1995 CATCGGACAGATAAACGGCTGGGCTAAGATCAATTTGGGCTGGCGAAACG 2044
||||...|||..||||||||||||.||.||||...||...||||||||.|
BL02465___lyt 1983 CATCTCCCAGGAAAACGGCTGGGCAAAAATCAGAATGAATTGGCGAAATG 2032
BSNT_05456___ 2045 CAAGCAGTGATGAAGTAGTTCAATACGTGGATCCAAATAACTTTAC-CAG 2093
|.|||||.||||||||.|...||||.||..||||..|.||.||.|| ||
BL02465___lyt 2033 CCAGCAGGGATGAAGTCGAGAAATATGTCAATCCGGAAAATTTCACACA- 2081
BSNT_05456___ 2094 AGACA-----GCAAATACTACTTCCAATTTCTCAAGCTGTCACAGACAGC 2138
||||| ||| ||||||||||||.|.||.|||||.||.||.||
BL02465___lyt 2082 AGACAGCTCGGCA-----TACTTCCAATTTTTAAAACTGTCGCAAACGGC 2126
BSNT_05456___ 2139 GGGCCTCAGCGTTACTGAGGTCAAT-CAGAAAGTGCTTGCGGGTAAAGGC 2187
.||..|.|..|.|.|.||||||||| || |||.|.|||.....||||||.
BL02465___lyt 2127 CGGATTGAATGCTGCCGAGGTCAATGCA-AAAATCCTTTATAATAAAGGG 2175
BSNT_05456___ 2188 ATCCTGACAGGGAGAGCAAAG-----GCATTTATCGATGCCGCCA-ATCA 2231
.|..|||||| |||||| ||.||.|||||.||.||.| |.|
BL02465___lyt 2176 GTTTTGACAG-----GCAAAGGGCAAGCGTTCATCGACGCGGCGAGAGC- 2219
BSNT_05456___ 2232 ATATAGCATCAACGAACTGTATTTAATCTCACACGCTCTTCTGGAAACAG 2281
|||.||||||||.||||||||..|.||.||||||.|.||.||.||.||.|
BL02465___lyt 2220 ATACAGCATCAATGAACTGTACCTCATTTCACACTCGCTCCTTGAGACGG 2269
BSNT_05456___ 2282 GAAACGGGACATCCGCCTTAGCCAATGGATTAACCTAT----AACGGAAA 2327
|.|||||.||.||||..||.||.||.|| |.|.|| |||||.||
BL02465___lyt 2270 GCAACGGAACTTCCGAGTTGGCTAAAGG----AACGATGTTCAACGGCAA 2315
BSNT_05456___ 2328 AAAAGTATACAACATGTATGGAATTGGAGCATACGACAGCAATCCGAATT 2377
|||.||.|||||.|||||.||..|.||.||.|||||||||||.|||..||
BL02465___lyt 2316 AAAGGTTTACAATATGTACGGCGTCGGGGCTTACGACAGCAACCCGCTTT 2365
BSNT_05456___ 2378 ACTACGGAGCCAAATATGCGTACGAGCAGGGCTGGTTCACACCAGAAGCG 2427
|||||||.||.|||||.||.||.||.||.||.|||||||||||.||.||.
BL02465___lyt 2366 ACTACGGCGCAAAATACGCCTATGAACAAGGGTGGTTCACACCTGAGGCC 2415
BSNT_05456___ 2428 GCCATTATCGGCGGAGCTAAATTCATAGGCTCATCGTATATCCACAACAC 2477
||||||||.||||||||.||||||||.||...|...||.||.|||.||.|
BL02465___lyt 2416 GCCATTATGGGCGGAGCCAAATTCATCGGTGAAAAATACATTCACCACCC 2465
BSNT_05456___ 2478 AGCTTACAATCAGGACACACTGTACAAAATGAGATGGTCAGCTACAGCGA 2527
..|||||||.||||||||.||.||.||||||||||||||..|.|..||..
BL02465___lyt 2466 GACTTACAAACAGGACACCCTCTATAAAATGAGATGGTCTCCGAATGCCC 2515
BSNT_05456___ 2528 CACATCAATACGCAACAGACATCGGCTGGGCGTACAAACAAGT----AAA 2573
..||.|||||.||.|||||..||||.|||||.|..||.||.|| |
BL02465___lyt 2516 TTCACCAATATGCGACAGATGTCGGATGGGCTTGTAAGCAGGTGGGGA-- 2563
BSNT_05456___ 2574 CCGCATGTACAGCCTGTATTCATTGCTGGACGGCTATACACTTTACTTTG 2623
|.||||||||.||||||.|||||||.||....|||||.||.||||.||
BL02465___lyt 2564 --GAATGTACAGTCTGTATACATTGCTCGATCAATATACGCTGTACTATG 2611
BSNT_05456___ 2624 ATGTTCCGGAATATCGATAA 2643
||||.||||..|||||.|||
BL02465___lyt 2612 ATGTGCCGGTTTATCGGTAA 2631
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