Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05456 and BL02465

See Amino acid alignment / Visit BSNT_05456 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:36
# Commandline: needle
#    -asequence dna-align/BSNT_05456___lytD.1.5803.seq
#    -bsequence dna-align/BL02465___lytD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05456___lytD-BL02465___lytD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05456___lytD-BL02465___lytD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05456___lytD
# 2: BL02465___lytD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2970
# Identity:    1721/2970 (57.9%)
# Similarity:  1721/2970 (57.9%)
# Gaps:         666/2970 (22.4%)
# Score: 4239.5
# 
#
#=======================================

BSNT_05456___      1 ATGAAAAA---GAGACTAATCG-CACCTATGCTTCTATCCGCCGCGTCCC     46
                     .|||||||   .|||..||.|| .|..|.||||.|.|||           
BL02465___lyt      1 GTGAAAAACATTAGAAAAACCGTTATTTTTGCTGCAATC-----------     39

BSNT_05456___     47 TTGCCTTTTTTGC-----CATATCTGGTTCTGCCCAGGC-----------     80
                           .||||||     ||||  .||  |.|.||.|||           
BL02465___lyt     40 ------ATTTTGCTCGTACATA--CGG--CAGTCCCGGCAATTCCTGCTT     79

BSNT_05456___     81 -AGCCGCGTATACCGACTAC-TCACTATATCAAGTAGAGCCGTCGAATAC    128
                      |||.||.|||||||| ||| ||..|.||..||.|.||..|..|.||...
BL02465___lyt     80 TAGCAGCATATACCGA-TACTTCCGTCTACAAAATTGAAACAGCAAAAGA    128

BSNT_05456___    129 GTTCAGTACAGAAAGCCAAGC-CTCACAAGCTGTCGCCAAACTGGAAAAA    177
                     |||.|.||..||||||.|||| |||| ||||.|.||...|||||.||||.
BL02465___lyt    129 GTTTAATAGCGAAAGCGAAGCGCTCA-AAGCAGCCGAACAACTGAAAAAG    177

BSNT_05456___    178 GATACTGGCTGGGATGC--------ATCCTATCAGG------CTTCAGGC    213
                     ||.||.||.|||.|.||        |.||| |||||      |    |||
BL02465___lyt    178 GACACGGGATGGAAAGCCGAGGTCAAACCT-TCAGGGAAAAAC----GGC    222

BSNT_05456___    214 ACAACA-ACGACCTACCAAATTTCCGCCTCAGGCATTCATAGCGA-ATCA    261
                     |||||| |||          |||                   .|| ||||
BL02465___lyt    223 ACAACATACG----------TTT-------------------TGACATCA    243

BSNT_05456___    262 GAAG----CGAA-----------AGCAATA---CTG----AGCGGACTCG    289
                     ||||    ||||           |||||.|   |||    .||.|..|  
BL02465___lyt    244 GAAGGTGTCGAAGGGGAGAGCAGAGCAAAAAATCTGCTTTTGCAGTTT--    291

BSNT_05456___    290 CCAAACAGACATCGATTACAGGAA--CGTC---AAGTCCTGTTGGAAGCA    334
                      .|||.|||.|.||.||   .|||  ||||   ..||||..||||||..|
BL02465___lyt    292 -GAAAAAGAAACCGGTT---TGAAGGCGTCCTATGGTCCGATTGGAAAAA    337

BSNT_05456___    335 AACAGCCATATGTCACCATCTCG---TC--AGGTGCCATCT-CCGGAGAA    378
                     ||.|.||.|   |..|||...||   ||  |||   .||.| ||||.|||
BL02465___lyt    338 AAGAACCGT---TTTCCAAAGCGGTATCAAAGG---AATTTGCCGGTGAA    381

BSNT_05456___    379 AAACAGGCCAA-CACTG-----TCCTAGCAAAGCTGAAACAGGAGACGGG    422
                     .||.|.||||| .|.||     |||     ||..|||||.||.|..||| 
BL02465___lyt    382 GAAAAAGCCAAGGAATGGGCGCTCC-----AATTTGAAAAAGAAACCGG-    425

BSNT_05456___    423 AGTGGCTGGCGCTGTAA--AAGCT-TAC--------GGAGCAGCTCAGCC    461
                               .|||.||  ||.|| |||        |||.|||...||| 
BL02465___lyt    426 ----------TCTGAAAGCAACCTATACACTTGCAGGGAACAGGGAAGC-    464

BSNT_05456___    462 CTATA--TGAACGTCATGACATC--AGACATTGCTGATG-AGACAAAAGT    506
                       |||  ||||.||  ||.||.|  ||..||.|..|..| ||||||.|..
BL02465___lyt    465 --ATACGTGAAGGT--TGCCACCGGAGGAATCGAAGGCGAAGACAACACG    510

BSNT_05456___    507 CAAGGCGCTTATCC-AGAACCTGGCCAAGCAAACGG---GGATTAAAAGC    552
                     .|||.|    |||| .||.|.|...|||  |||..|   ||..|.|||||
BL02465___lyt    511 AAAGCC----ATCCTCGATCGTTTTCAA--AAAGCGACCGGCCTCAAAGC    554

BSNT_05456___    553 -TCGTATCAGC-CCATCACACACACGGTGTCTGTCACAACCATTCGTTCT    600
                      ||||||  || ||||       ||||.|  .|..||||.|..||||   
BL02465___lyt    555 GTCGTAT--GCACCAT-------ACGGAG--CGGGACAAGCGATCGT---    590

BSNT_05456___    601 GGCACAATCGTGGGAGACAGCAGAGCAGCGCAGAT-----CAA----AAA    641
                         |||.|.|  .|..|.||||| .|.|||||||     |||    |||
BL02465___lyt    591 ----CAAGCTT--TATTCTGCAGA-AATCGCAGATGAGAGCAAAGCGAAA    633

BSNT_05456___    642 AGCCT-----TCC------AAAAGGAATCGGGGCTGAAGGCATCATTAAA    680
                     |||||     |||      ||||.|||.|||           .|.|||||
BL02465___lyt    634 AGCCTGCTTGTCCAGTTTGAAAAAGAAACGG-----------CCCTTAAA    672

BSNT_05456___    681 GGAA--------ACAGT---GAAAGGACAAGCCT-ATTATACGTTCACAA    718
                     ||||        ||.||   ||||..|| ||||| |.|||      |.||
BL02465___lyt    673 GGAACGATAGAGACCGTAAAGAAACAAC-AGCCTAAATAT------AAAA    715

BSNT_05456___    719 CTGCTGCCATTTC------AGGTGAAGCGAATGCCAAGACTCTATTGCAG    762
                     .|||..|.|.|||      |||.|||.|.||.||.||.|..||..||.||
BL02465___lyt    716 TTGCGACAAGTTCGATACAAGGCGAAACAAACGCGAAAAACCTGCTGAAG    765

BSNT_05456___    763 CAG-CTGAAACAGAGCACTGGCATCACAGGCAGCTACAAGTCCATCAATC    811
                     ||| .|||||.|||||       |||.||                   ||
BL02465___lyt    766 CAGTTTGAAAAAGAGC-------TCAAAG-------------------TC    789

BSNT_05456___    812 AAA----------AAACAACCGTTGAGTC---------ATACAATGTCCA    842
                     |||          ||.|..|||.|.||.|         |||||||||..|
BL02465___lyt    790 AAAGGGGCATATGAAGCCGCCGGTCAGCCGGCACAGCTATACAATGTGAA    839

BSNT_05456___    843 ATCAGCTTATTTCAAAGGCCTGAATACAG-----TAAAGGACGCCATCAG    887
                     |||.|..|||||.||.|.|  |||.|.||     .|||.|.|||   |.|
BL02465___lyt    840 ATCGGGATATTTTAATGAC--GAAAAGAGCGCGAAAAATGCCGC---CGG    884

BSNT_05456___    888 CCAGATCAAGAAAAACACCGGTGTATCCGGCAGTTATC--------AACA    929
                     .||.||.||.||.||.||||||.|..||        ||        ||.|
BL02465___lyt    885 ACAAATTAAAAAGAAAACCGGTCTCGCC--------TCAAGCACGGAAAA    926

BSNT_05456___    930 GGTTGGAAAAAG---CAC--------ATCATATACCGTGAATATGAAGGG    968
                     |||    |||||   |||        |||.|| |.|.||||    |||.|
BL02465___lyt    927 GGT----AAAAGGTACACGCTTCTGGATCGTA-AGCATGAA----AAGCG    967

BSNT_05456___    969 GATA---ACAAAACAGCAGCTCCAAAAAGTAGATACTTTCTTTAAAAAGA   1015
                     .|.|   .||||||     |||.|||||.|.||..|.||.||.|||||||
BL02465___lyt    968 TAGACAGTCAAAAC-----CTCAAAAAAATCGACGCCTTTTTCAAAAAGA   1012

BSNT_05456___   1016 AAAAATGGCATTATACGTCATCCA---GCGTCAAAAAA----ACAAC---   1055
                     |||..||||.|||||| |..|.||   |||...|||||    |||.|   
BL02465___lyt   1013 AAACGTGGCGTTATAC-TGCTGCAAAGGCGGGGAAAAAGCAGACATCTTT   1061

BSNT_05456___   1056 ----AACGTCTGCG----GCTTACCAAATCACGACAGCCAAGATGTTAGG   1097
                         |.|||.|.||    |||| .||.||||        ||         
BL02465___lyt   1062 CAGAATCGTTTCCGTCCCGCTT-TCAGATCA--------AA---------   1093

BSNT_05456___   1098 CGAGCAGCAAGCAAACAAAGCAGCAGCC--TTCTTTGCTCAGAAAAAAGT   1145
                          ||.||||||||.|.|  |||.||  ||.|||       |||||..
BL02465___lyt   1094 -----AGAAAGCAAACGATG--GCATCCGGTTTTTT-------AAAAACA   1129

BSNT_05456___   1146 AAAA-------GC-----CACAAA--AACAGCAGCTGGATCAACAGCAGA   1181
                     ||||       ||     |.||||  |.|.|||||..||.|..||||   
BL02465___lyt   1130 AAAATATTCAGGCTTCTGCGCAAAGCACCGGCAGCACGACCGTCAGC---   1176

BSNT_05456___   1182 AAATCAATATCAGCTCATC---------TCAGAAGAAACATCAGATCAAG   1222
                                  |.|.||         ||.|..|||||..|.|.|||||
BL02465___lyt   1177 -------------CGCTTCCGGATTGCGTCTGCTGAAACCGCCGTTCAAG   1213

BSNT_05456___   1223 CAAAAGTC-ACAAAGGGTTTGAACATATTAAAGAAAAATCAGCTGAGTGC   1271
                     |...|.|| |.||||||.||||| .|.||.||||||||      ..||||
BL02465___lyt   1214 CGCGAATCAATAAAGGGCTTGAA-TTCTTTAAGAAAAA------CGGTGC   1256

BSNT_05456___   1272 TTCTGCGAA-ATCCG--TCAA----AAAACAA----ATAGCTGACACGTT   1310
                     ..| |.||| ..|||  ||||    ||||.||    |.|||   ||| |.
BL02465___lyt   1257 GGC-GGGAACGGCCGGATCAACAGGAAAAAAAGTGTACAGC---CAC-TA   1301

BSNT_05456___   1311 TAAAATCACAACCGAATCTCTGTTTGACCA-AACGAAAGTCAATCAGGCA   1359
                     |.|..|.|||||.|||||..|.|..||.|| ||| |||||.|..|||||.
BL02465___lyt   1302 TCAGCTGACAACGGAATCCGTATACGAACAGAAC-AAAGTGACGCAGGCG   1350

BSNT_05456___   1360 CTCACGTTTTTCAAATCGAATCA--TATATCA-GCAGCAAGCC-AGAAAA   1405
                     ||||..||.||.|||  |||.||  .|| ||| |||| |.||| .|||.|
BL02465___lyt   1351 CTCAATTTCTTTAAA--GAAACAGGCAT-TCACGCAG-AGGCCGTGAAGA   1396

BSNT_05456___   1406 CCGGTCA----GACAGCTGCGAGCAGCTATCAAA-TCACAACTGAAGCTA   1450
                     ||||.||    .|||||.||.|        |||| |.|...|.||||||.
BL02465___lyt   1397 CCGGCCAATATTACAGCCGCTA--------CAAACTGAGTTCGGAAGCTC   1438

BSNT_05456___   1451 TCATCAGCCAAGAAGAGATTGAC------CGCGTTTTAACATTTTTCAAA   1494
                     |.|||.||...|||.| ||| ||      |||    |...||||||| |.
BL02465___lyt   1439 TGATCGGCACGGAACA-ATT-ACAGCAGGCGC----TCGGATTTTTC-AG   1481

BSNT_05456___   1495 CAA----AATCATATCGCAGTCACAACAT--CAAAAACAGGCCAG-ACAG   1537
                     |||    ||| |||.||    ..|||.||  .|.||||.||..|| ||.|
BL02465___lyt   1482 CAAGCGGAAT-ATACCG----GGCAAGATTGAACAAACGGGTGAGTACGG   1526

BSNT_05456___   1538 CATATACA--CAATACAAAATC--GTGACAACA---CAGCTCAGCAGCAA   1580
                     |   ||||  ||.|||     |  |||||.|||   |...|||..|||||
BL02465___lyt   1527 C---TACAGGCAGTAC-----CGGGTGACGACAGGTCGAATCACAAGCAA   1568

BSNT_05456___   1581 AACAGCAT-TGAATAATGGGTT-AACCTATC-TTAAATCGAAAAGTGTAA   1627
                     |.||| || |..|.||.||.|| ||  |.|| ||||...|||.|.|||.|
BL02465___lyt   1569 AGCAG-ATCTCGACAAGGGCTTGAA--TGTCTTTAAGAAGAACAATGTCA   1615

BSNT_05456___   1628 CCCCTAGCTATAC--AACGAAAAGCAATACG------CTTTATAAAATCA   1669
                     .|.| |.|| |||  |||  ||||    |||      ||.|.|.|.||| 
BL02465___lyt   1616 GCGC-AACT-TACCAAAC--AAAG----ACGGTCAGCCTGTTTCATATC-   1656

BSNT_05456___   1670 GCG-TAAATGAGCAGTTCACAGGCAATGA---TACAGCTGCTGCGGCATC   1715
                     .|| |.|||||.||.||.|||||.||.||   |.|.|.||||||.||  |
BL02465___lyt   1657 TCGATCAATGAACAATTTACAGGGAAAGACCGTGCGGATGCTGCCGC--C   1704

BSNT_05456___   1716 AA-CGAAGCTAAAAC-AATTATACGGATGGAC-----ATCATCTATCGTG   1758
                     || ||.|.| ||||| |||  |||||.|||.|     |     |.||||.
BL02465___lyt   1705 AATCGGATC-AAAACGAAT--TACGGCTGGCCGGTGAA-----TGTCGTC   1746

BSNT_05456___   1759 AAGATCAAAAACGGTCCGCAAATCATGAAAACAAATTAC--AATCTCTCG   1806
                     ||..|.||||||||.||||||||||..|..||..|.|||  ||  ||.||
BL02465___lyt   1747 AAAGTGAAAAACGGCCCGCAAATCACAACGACTGACTACGGAA--TCACG   1794

BSNT_05456___   1807 CTTCGTGATATGGTCCAAAAACAAATGACAGTAAGTCCGCAAACAGACGG   1856
                     ||..|..|.|||.||.|.|||||.||||.|||.||.||||||||.||.|.
BL02465___lyt   1795 CTCAGCCAGATGATCGATAAACAGATGAAAGTCAGCCCGCAAACGGATGC   1844

BSNT_05456___   1857 AGCGGCTTACGTATCGCTCACGTACATTAATACAGC--AACATCAACCGT   1904
                     ..|||||||.||.||..|.|..|||||.|||||.||  |.||  ||||||
BL02465___lyt   1845 GCCGGCTTATGTTTCATTGAGCTACATCAATACGGCGAACCA--AACCGT   1892

BSNT_05456___   1905 TACGGCTGACGTACTAAATATCCGGTCAACGCCGGAAGTCAGCCC----G   1950
                     .||||||||..|.||.||||||.|||||| |||         |||    |
BL02465___lyt   1893 CACGGCTGATCTGCTGAATATCAGGTCAA-GCC---------CCCTTGTG   1932

BSNT_05456___   1951 ACA------AACGTGATCGGCCAATTTAAAAAAGGCGATAAAGTGAAAAT   1994
                     |||      |||.|.|||||.||..|..|||||||.||||||||.||.||
BL02465___lyt   1933 ACAGGCGGCAACATCATCGGACAGCTGCAAAAAGGGGATAAAGTCAACAT   1982

BSNT_05456___   1995 CATCGGACAGATAAACGGCTGGGCTAAGATCAATTTGGGCTGGCGAAACG   2044
                     ||||...|||..||||||||||||.||.||||...||...||||||||.|
BL02465___lyt   1983 CATCTCCCAGGAAAACGGCTGGGCAAAAATCAGAATGAATTGGCGAAATG   2032

BSNT_05456___   2045 CAAGCAGTGATGAAGTAGTTCAATACGTGGATCCAAATAACTTTAC-CAG   2093
                     |.|||||.||||||||.|...||||.||..||||..|.||.||.|| || 
BL02465___lyt   2033 CCAGCAGGGATGAAGTCGAGAAATATGTCAATCCGGAAAATTTCACACA-   2081

BSNT_05456___   2094 AGACA-----GCAAATACTACTTCCAATTTCTCAAGCTGTCACAGACAGC   2138
                     |||||     |||     ||||||||||||.|.||.|||||.||.||.||
BL02465___lyt   2082 AGACAGCTCGGCA-----TACTTCCAATTTTTAAAACTGTCGCAAACGGC   2126

BSNT_05456___   2139 GGGCCTCAGCGTTACTGAGGTCAAT-CAGAAAGTGCTTGCGGGTAAAGGC   2187
                     .||..|.|..|.|.|.||||||||| || |||.|.|||.....||||||.
BL02465___lyt   2127 CGGATTGAATGCTGCCGAGGTCAATGCA-AAAATCCTTTATAATAAAGGG   2175

BSNT_05456___   2188 ATCCTGACAGGGAGAGCAAAG-----GCATTTATCGATGCCGCCA-ATCA   2231
                     .|..||||||     ||||||     ||.||.|||||.||.||.| |.| 
BL02465___lyt   2176 GTTTTGACAG-----GCAAAGGGCAAGCGTTCATCGACGCGGCGAGAGC-   2219

BSNT_05456___   2232 ATATAGCATCAACGAACTGTATTTAATCTCACACGCTCTTCTGGAAACAG   2281
                     |||.||||||||.||||||||..|.||.||||||.|.||.||.||.||.|
BL02465___lyt   2220 ATACAGCATCAATGAACTGTACCTCATTTCACACTCGCTCCTTGAGACGG   2269

BSNT_05456___   2282 GAAACGGGACATCCGCCTTAGCCAATGGATTAACCTAT----AACGGAAA   2327
                     |.|||||.||.||||..||.||.||.||    |.|.||    |||||.||
BL02465___lyt   2270 GCAACGGAACTTCCGAGTTGGCTAAAGG----AACGATGTTCAACGGCAA   2315

BSNT_05456___   2328 AAAAGTATACAACATGTATGGAATTGGAGCATACGACAGCAATCCGAATT   2377
                     |||.||.|||||.|||||.||..|.||.||.|||||||||||.|||..||
BL02465___lyt   2316 AAAGGTTTACAATATGTACGGCGTCGGGGCTTACGACAGCAACCCGCTTT   2365

BSNT_05456___   2378 ACTACGGAGCCAAATATGCGTACGAGCAGGGCTGGTTCACACCAGAAGCG   2427
                     |||||||.||.|||||.||.||.||.||.||.|||||||||||.||.||.
BL02465___lyt   2366 ACTACGGCGCAAAATACGCCTATGAACAAGGGTGGTTCACACCTGAGGCC   2415

BSNT_05456___   2428 GCCATTATCGGCGGAGCTAAATTCATAGGCTCATCGTATATCCACAACAC   2477
                     ||||||||.||||||||.||||||||.||...|...||.||.|||.||.|
BL02465___lyt   2416 GCCATTATGGGCGGAGCCAAATTCATCGGTGAAAAATACATTCACCACCC   2465

BSNT_05456___   2478 AGCTTACAATCAGGACACACTGTACAAAATGAGATGGTCAGCTACAGCGA   2527
                     ..|||||||.||||||||.||.||.||||||||||||||..|.|..||..
BL02465___lyt   2466 GACTTACAAACAGGACACCCTCTATAAAATGAGATGGTCTCCGAATGCCC   2515

BSNT_05456___   2528 CACATCAATACGCAACAGACATCGGCTGGGCGTACAAACAAGT----AAA   2573
                     ..||.|||||.||.|||||..||||.|||||.|..||.||.||    |  
BL02465___lyt   2516 TTCACCAATATGCGACAGATGTCGGATGGGCTTGTAAGCAGGTGGGGA--   2563

BSNT_05456___   2574 CCGCATGTACAGCCTGTATTCATTGCTGGACGGCTATACACTTTACTTTG   2623
                       |.||||||||.||||||.|||||||.||....|||||.||.||||.||
BL02465___lyt   2564 --GAATGTACAGTCTGTATACATTGCTCGATCAATATACGCTGTACTATG   2611

BSNT_05456___   2624 ATGTTCCGGAATATCGATAA   2643
                     ||||.||||..|||||.|||
BL02465___lyt   2612 ATGTGCCGGTTTATCGGTAA   2631


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