Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05536 and BL02448
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05536___ywqB.1.5803.seq
# -bsequence dna-align/BL02448___ywqB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05536___ywqB-BL02448___ywqB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05536___ywqB-BL02448___ywqB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05536___ywqB
# 2: BL02448___ywqB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1706
# Identity: 1146/1706 (67.2%)
# Similarity: 1146/1706 (67.2%)
# Gaps: 202/1706 (11.8%)
# Score: 3465.5
#
#
#=======================================
BSNT_05536___ 1 ATGCTTCAGAATATGATTTCCAAAGAC-GATGTGCTGGCAT-CTGCTGAA 48
||||||||..|.|||||.| ||||.|| |.||||.||| || |.||||||
BL02448___ywq 1 ATGCTTCAAGACATGATCT-CAAAAACGGTTGTGATGG-ATGCAGCTGAA 48
BSNT_05536___ 49 CAGTTAAAAGAACTTCTTCCTTACAATGAGGAAAATGTTCAGCTGATCAA 98
|||||.||..|..|.||.||.|.||..||.|||||..|||||||.||.||
BL02448___ywq 49 CAGTTTAAGCATGTACTGCCGTGCACAGAAGAAAACATTCAGCTCATGAA 98
BSNT_05536___ 99 AAAAGCCCTTATTTTATATCGGCAGGATTCAGTCTATCGTTTACAAGCAG 148
||||||||||||||||||..|.||||||||.||||||||..| |||||.|
BL02448___ywq 99 AAAAGCCCTTATTTTATACAGACAGGATTCCGTCTATCGGGT-CAAGCCG 147
BSNT_05536___ 149 -TGAGTCCGACGGAAGTTACG------GCTTACGTGCAGGATGTTGTACC 191
|||| || ||.| |||| ||||||||.|||||.|||||.||
BL02448___ywq 148 ATGAG--CG--GGCA--TACGGTCAGCGCTTACGTCCAGGACGTTGTCCC 191
BSNT_05536___ 192 TGTGCGGGTC-ACATTGAACT------TGTTTGTCATAGTCAAAAGCGGC 234
.||...|||| .|||.||.|| .||| |.| ||||||.||
BL02448___ywq 192 GGTAAAGGTCTTCATCGACCTCGCCGACGTT----AAA---AAAAGCAGC 234
BSNT_05536___ 235 TGTTCATGTCCGTCCGGAAGA-ATCTGCCGCCATATGCTGGCTGTGTTTT 283
|||||.|| ||.|.|..||.| ||.|||||.|||.||||.||.||.|..|
BL02448___ywq 235 TGTTCCTG-CCCTGCTCAAAACATGTGCCGTCATGTGCTTGCCGTTTACT 283
BSNT_05536___ 284 TATATGTATATG--CAATGTTCGAGCGAGTGGGTACTTTTACAGAGTATT 331
|||||.|||||| ||||.| ||.|||.||||.||.|||||.||||.||
BL02448___ywq 284 TATATCTATATGCACAATAT--GATCGATTGGGAACATTTACGGAGTTTT 331
BSNT_05536___ 332 GGCTGGAGAGGG---AAAAGCTGGAGGAAAGCAAAGAG---CTCGTCCGC 375
||..||| ||.| |||.||.| .||||.|...||| ||||
BL02448___ywq 332 GGAAGGA-AGCGCAAAAACGCCG--CGAAAACCGGGAGATTCTCG----- 373
BSNT_05536___ 376 CGCCAGTTTCAGGAAAAGGTGCTGCCTAATGAAG----------AATCGC 415
|.|||.||||| .||..||||||| |..|||
BL02448___ywq 374 -GACAGCTTCAG----------CGCGGAATGAAGCCCCGCAGCCACACGC 412
BSNT_05536___ 416 T--TTCAAGCTGG--CTTGCTTTTTTTGATTCAGAGTTTTCTCTCTGGCA 461
| .|||| ||| || |.|||||..||.|.|||||....|.||||.|
BL02448___ywq 413 TCGATCAA--TGGACCT--CCTTTTTCAATACGGAGTTCAGACGCTGGGA 458
BSNT_05536___ 462 GGCACGTACGCC-AGAAGGCAGCCAAAAC-ATGCAGGGCCTCTATTACGG 509
||..|.|||||| |.||..|||| |||| |||||...|||.||.|||||
BL02448___ywq 459 GGAGCATACGCCTAAAAACCAGC--AAACGATGCAATACCTTTACTACGG 506
BSNT_05536___ 510 CTACCTGTCCGCATTAAAAAAACATGCGCC----GAACAAGCCGGAGCTG 555
.||..|.||.||.||||||||.|...|||| | |||||||||||
BL02448___ywq 507 GTATTTTTCAGCTTTAAAAAAGCGGACGCCTGCGG----AGCCGGAGCTG 552
BSNT_05536___ 556 AAAAGCCTGTATCAGATTCATTCCGCGATTGCGGTTTGGCTTCGC-ATG- 603
||||...|||||||.||.||..|.||..|||||...|||||| || |||
BL02448___ywq 553 AAAAAAATGTATCAAATCCACGCGGCTCTTGCGACATGGCTT-GCTATGC 601
BSNT_05536___ 604 -TTCACATTGATTG---AAGCGGGCAAGCTGAACCCCGAACAAGATTTTT 649
||||| |..|.| |||.|.||| |..|.||.|||.|||||||||
BL02448___ywq 602 ATTCAC--TCGTCGAGAAAGGGCGCA---TCGATCCTGAAAAAGATTTTT 646
BSNT_05536___ 650 ATTCCCTCAATCCGTACGTTGAACAGCTGATGGATACAATCTACAGCTCT 699
|.||.||.|||||.||..|.|||||||||||||||||.|||||||||||.
BL02448___ywq 647 ACTCGCTGAATCCTTATATCGAACAGCTGATGGATACGATCTACAGCTCG 696
BSNT_05536___ 700 ATTGATAAATTAAAAACGTACGCGCTGTCTTTTGCGCTTGATCCGTTTTT 749
||.|||.||.|.|||||.||.|||||.||.||..|.|||||.||||||||
BL02448___ywq 697 ATCGATGAACTGAAAACATATGCGCTATCGTTCTCCCTTGACCCGTTTTT 746
BSNT_05536___ 750 GGATAAAACACCGGATGTTATCCG---ACCTTTGCTGTTGAAAGAAGAAA 796
.||.|||||.||.|..||.||.|| || |||||.|.||..||||.|
BL02448___ywq 747 AGAAAAAACCCCCGGCGTGATTCGGGAAC---TGCTGCTCAAGAAAGATA 793
BSNT_05536___ 797 TTTTCCAATATGAACGCATCCGCGTCTTCGGTGAAATTTGGAGTGCGCTG 846
|||||||.||||||.|..|.||..|.|||||.||.||.|||||||||||.
BL02448___ywq 794 TTTTCCAGTATGAAAGGCTGCGGATTTTCGGGGAGATCTGGAGTGCGCTT 843
BSNT_05536___ 847 CTGTCGCGGCCAAAATGGGTGGCACGTGAA-CAGGA----GATAT--TGA 889
||.||.||||||||.||| .|||| |.||| |||.| ||
BL02448___ywq 844 CTATCCCGGCCAAACTGG-------CTGAAGCGGGAGCTCGATGTGCTG- 885
BSNT_05536___ 890 AAAAAGAAGCAGGACGGCGTTTTTCTCCCGAATTGCAATTCGGGCGCCTG 939
||.||.|.||| || .|||.||.|||.|.||||||||..|.|||
BL02448___ywq 886 ---AACAATCTGGA--GC---CTTCGCCTGAAATACAATTCGGCAGGCTG 927
BSNT_05536___ 940 CATTTGGAATTCCTGCAAAAGAATGATGACGTTATTTTTGCGGAAG-CGG 988
|||.|.|||||.||||..||.||.|||||.||.|||.|||...||| |||
BL02448___ywq 928 CATCTTGAATTTCTGCTGAAAAACGATGATGTGATTCTTGATCAAGCCGG 977
BSNT_05536___ 989 ATCAATTCCCGCCGGAAGCGCTCCCTTATACGTTCCAATGGCTGAGTGAA 1038
||| .||..|.|||||....||.||.||||||||.||||||||.||||..
BL02448___ywq 978 ATC-GTTTTCACCGGAGATTCTTCCGTATACGTTTCAATGGCTCAGTGTC 1026
BSNT_05536___ 1039 ATGACTGCCAAGAAGGACTGGAAACGGCTTAAAACATGGTACCAGCAAAT 1088
|||||.|||||.|||||||||||.||.||.||||.||||||..|.||..|
BL02448___ywq 1027 ATGACCGCCAAAAAGGACTGGAAGCGCCTGAAAAAATGGTATGAACACCT 1076
BSNT_05536___ 1089 TGAGCCAATTGC-GATGGGTTATACGAAG-CTGGATAAGCCGTTTAAA-- 1134
|||||...|.|| |..||.||.| |.|| ||||||||.|||| |
BL02448___ywq 1077 TGAGCAGCTGGCGGCCGGCTTCT--GCAGACTGGATAAACCGT----ACC 1120
BSNT_05536___ 1135 --GAGATTCGCGATGTGATCGGCGAGCTGTTCCTTCTGTTGAATGCCTAT 1182
||.||.||||||||..|..|||| .|||.|.||||| .|||.
BL02448___ywq 1121 GGGAAATACGCGATGTACTAAGCGA---ATTCTTCCTGTT-----TCTAA 1162
BSNT_05536___ 1183 G----TGCAGCAAA----CCAATGATCAAGCGC---TGTTTGAGCGCT-T 1220
| |.||||||| |.||.| |||.|| |.|||||.||.| |
BL02448___ywq 1163 GCGATTACAGCAAAAACGCAAAAG---AAGAGCATGTATTTGAACGGTAT 1209
BSNT_05536___ 1221 TGCCGCGGGCTGTCTGCCGTATACGTTCACAGAATACAGCCATCATTTAT 1270
|||...|.| ||.||.||.|||||.||.||.||||||||||||..|||||
BL02448___ywq 1210 TGCAAAGAG-TGCCTTCCTTATACATTTACTGAATACAGCCATTTTTTAT 1258
BSNT_05536___ 1271 ATGAAAAAAAACGCTATGCCGAGTGGATTGAAATTCATAGCCTTGTCGGC 1320
||.|.|||||.||||.|.|.||||||||.||.||.||.|||||||||||.
BL02448___ywq 1259 ATAACAAAAACCGCTTTACGGAGTGGATGGAGATCCACAGCCTTGTCGGT 1308
BSNT_05536___ 1321 TTGTCCATCAATGAAAT-GGATAAAATGATGC--TCAAGGAAATTGCAGC 1367
||.||.|||..|||.|| ||..|.| |.|| |.||.||.|||||.||
BL02448___ywq 1309 TTTTCAATCTCTGAGATAGGGCAGA---ACGCCTTGAAAGACATTGCGGC 1355
BSNT_05536___ 1368 GAGCGAC-CCTGAGGCGCTTATACCGGCTTACCATAGAGAAGT-----GG 1411
||||.| |||||.||..|.||.||..|.||.||.||||||.| ||
BL02448___ywq 1356 -AGCGGCTCCTGAAGCATTGATCCCTTCCTATCACAGAGAAATTTCCGGG 1404
BSNT_05536___ 1412 CTTTTTTCATTGATCAGAAGAACCGC---AGCTCGTACAAGGAAGCCGCC 1458
| |..||||.||.||.|||||| ||| |||||.|||||||.|
BL02448___ywq 1405 C-----TGGTTGAACAAAAAAACCGCTCAAGC---TACAAAGAAGCCGTC 1446
BSNT_05536___ 1459 CGGTATTTGAAAAAATTGCGCACCCTGTACAAAAAAGCGAAAAAGCAGAA 1508
....|.||.|||||..||||||||||.||.||||||||||||||.|||.|
BL02448___ywq 1447 AAACAATTAAAAAAGCTGCGCACCCTTTATAAAAAAGCGAAAAAACAGGA 1496
BSNT_05536___ 1509 GGTGTGGGAGCGGTATATTCAGC--TGCTGAGCTCGCATTACAAGCGCCT 1556
.||.|||.|.||||.|||..||| |..|.|||.||| ||.||.||.||
BL02448___ywq 1497 TGTCTGGAACCGGTTTATGGAGCAGTTTTCAGCCCGC--TATAAACGGCT 1544
BSNT_05536___ 1557 GCGTGCGCTT-CAAGAAGAACTGCAGAAAGGAAAGTTGATTGATGGCGAG 1605
|.|.|| ||| ||.||.||.||..||||||||||||||||.|||||||||
BL02448___ywq 1545 GAGAGC-CTTCCAGGAGGAGCTTAAGAAAGGAAAGTTGATCGATGGCGAG 1593
BSNT_05536___ 1606 TCTTAA 1611
||||||
BL02448___ywq 1594 TCTTAA 1599
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