Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05489 and BL02444
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:38
# Commandline: needle
# -asequence dna-align/BSNT_05489___alsR.1.5803.seq
# -bsequence dna-align/BL02444___alsR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05489___alsR-BL02444___alsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05489___alsR-BL02444___alsR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05489___alsR
# 2: BL02444___alsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 987
# Identity: 612/987 (62.0%)
# Similarity: 612/987 (62.0%)
# Gaps: 186/987 (18.8%)
# Score: 1854.5
#
#
#=======================================
BSNT_05489___ 1 ATGGAGCTTCGCCATCTTCAATACTTTATCGCAGTAGCCGAAGAGCTTCA 50
||||||||.||||||||||..||.|||||.|..||.||||||||.||.||
BL02444___als 1 ATGGAGCTGCGCCATCTTCGTTATTTTATGGTTGTTGCCGAAGAACTGCA 50
BSNT_05489___ 51 TTTCGGAAAGGCTGCCCGGCGGCTGAACATGACGCAGCCTCCTCTCAGCC 100
|||||||||.||.||.|..||||||||||||||.||||||||.|||||||
BL02444___als 51 TTTCGGAAAAGCAGCTCTTCGGCTGAACATGACTCAGCCTCCGCTCAGCC 100
BSNT_05489___ 101 AGCAGATCAAACAGCTGGAGGAA--GAAGTCGGAGTTACGCTT-CTGAAA 147
|||||||.|||||||| ||.|| |||.|.||.||.|| ||| |||||.
BL02444___als 101 AGCAGATTAAACAGCT--AGAAAGTGAAATAGGCGTCAC-CTTGCTGAAG 147
BSNT_05489___ 148 AGGACAAAACGATTTGTCGAGCTTACCGCAGCAGGAGAAATCTTTTTAAA 197
|||.|||||.||...|||..|||.||.||.|||||.|...||||||||||
BL02444___als 148 AGGTCAAAAAGAGCCGTCAGGCTAACGGCGGCAGGCGGGGTCTTTTTAAA 197
BSNT_05489___ 198 TCATTGCCGCATGGCCTTGATGCAAATC--GGACAAGGA---------AT 236
.|||||| || ||||| ||
BL02444___als 198 ---------------------ACAAATCAAGG--AAGGACTTTCCCAGAT 224
BSNT_05489___ 237 TGAAC------------TGGCACAGCGGACGGCCCGCGGCGAGC----AA 270
|||.| ||||.|||||||||||||||||.|||| ||
BL02444___als 225 TGATCAGGCCGTCGACATGGCTCAGCGGACGGCCCGCGGGGAGCTGGGAA 274
BSNT_05489___ 271 GGCCTTCTCGTAATCGGTTTTGTCGGATCAGCTACATATGAATTTCTGCC 320
| .|||||.|||||.||||||||.||.||.|||||.||..|..||||
BL02444___als 275 G----ACTCGTGATCGGCTTTGTCGGCTCCGCAACATACGAGATCATGCC 320
BSNT_05489___ 321 GCCGATTGTCCGGGAATATCGTAAAAAA----TTCCCATGTGTGAAAATA 366
.||.||..||.|||||||.|| ||| |||||.|..|||.|.||.
BL02444___als 321 TCCCATCATCAGGGAATACCG----AAACCGGTTCCCGTCCGTGCAGATC 366
BSNT_05489___ 367 GAACTGCGTGAAATATCCTCGTCTAGGCAGCAAGAGGAGCTACTAAA-GG 415
||.||.||.||..|.||..|..|.|..|||...||.|..||.||||| ||
BL02444___als 367 GATCTTCGGGAGCTTTCAACCCCCAATCAGATCGATGCACTGCTAAACGG 416
BSNT_05489___ 416 GCAACATTGATATTGGTATACTTCATCCTCCCTT------------ACAG 453
|| |.|||||.||.||..|.||.|||||.||.|| ||.|
BL02444___als 417 GC-ATATTGACATCGGGGTGCTGCATCCCCCGTTGGGAAACGACGAACTG 465
BSNT_05489___ 454 ----CATACAGCTTTACATATCG---AAACCGCCCAAAGCAGCCCTTGTG 496
|||||| || ||| ||| ||||.|||||
BL02444___als 466 AAGTCATACA-----------CGGTAAAA------AAA--AGCCATTGTG 496
BSNT_05489___ 497 TTTTAGCTTTGCCTAAGCAACACCCATTGACTTCTAAGGAATCAA----- 541
|..|.||..|.||.||.||.|||||.||||| ||.|| ||
BL02444___als 497 TCCTTGCACTTCCAAAACACCACCCGTTGAC-----AGAAA--AAGCCCG 539
BSNT_05489___ 542 -TTACGATTG-AGGAT-TTAAGAGATGAACCAATTATTACTG-------T 581
.|||..||| ||||| ||.| |||.|| ||..||| |
BL02444___als 540 GGTACATTTGAAGGATCTTGA-AGAAGA-------ATCGCTGATCGTCAT 581
BSNT_05489___ 582 TGCTAAAGAAGCATGGCCTACTCTATACATGGATTTTA--TTCAGTTCTG 629
|||.||||||||.|||||..||.||||||.|||.||.| ||| ||.||
BL02444___als 582 TGCCAAAGAAGCGTGGCCCTCTTTATACACGGAATTCAATTTC--TTGTG 629
BSNT_05489___ 630 TGAACAAGCGGGCTTCAGACCCAACATTGTCCAGGAAGCCACAGAATATC 679
||||.||||.||.||.|..||||||||.|.|||||||||.||||||||.|
BL02444___als 630 TGAAAAAGCCGGATTTATCCCCAACATCGCCCAGGAAGCTACAGAATACC 679
BSNT_05489___ 680 AAATGGTGATTGGTTTAGTCAGC-GCCGGAATTGGTATGACATTTGTTCC 728
||||||||||.||..|.|| |.| ||||||||.||.||..|..|.||.||
BL02444___als 680 AAATGGTGATCGGCCTCGT-ATCGGCCGGAATGGGAATCGCCGTCGTGCC 728
BSNT_05489___ 729 TTCCTCAGCCAAAAAATTATTTAATTTGGATGTTACTTATCGAA--AAAT 776
|.|..|.||.|||..|||||||||..|.|||||| .|||..|| ||||
BL02444___als 729 TACGGCGGCTAAACGATTATTTAACCTTGATGTT--GTATACAAAGAAAT 776
BSNT_05489___ 777 GGACCAAATACAGCTTAATGCCGAATGGGTTATCGCTTACCGCAAAGACA 826
.||..|..|.|..|||...|||||||||.|||.|||..|.||.||.||||
BL02444___als 777 CGAAGACTTTCCCCTTCGCGCCGAATGGATTACCGCACATCGAAAGGACA 826
BSNT_05489___ 827 ATCATAATCCG---CTTATAAAGCATTTTATTCATATTTCAAATTGTCAG 873
|.|..|||||| ||| ||||||||.||..|.||.|||.| |||.
BL02444___als 827 ACCGCAATCCGGCACTT---AAGCATTTCATCGAAATCTCAGA---TCAA 870
BSNT_05489___ 874 CAGACA-AGAACTAAAGAGAGTGATGCAGGTACATGA 909
||..|| ||
BL02444___als 871 CACTCATAG---------------------------- 879
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