Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05481 and BL02443
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:38
# Commandline: needle
# -asequence dna-align/BSNT_05481___rbsB.1.5803.seq
# -bsequence dna-align/BL02443___rbsB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05481___rbsB-BL02443___rbsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05481___rbsB-BL02443___rbsB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05481___rbsB
# 2: BL02443___rbsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 941
# Identity: 689/941 (73.2%)
# Similarity: 689/941 (73.2%)
# Gaps: 49/941 ( 5.2%)
# Score: 2475.5
#
#
#=======================================
BSNT_05481___ 1 ATGAAAAAGGCAGTATCCGTCATTTTAACGTTATCAT---------TATT 41
||||||||..||.||.|.|| |||.|.|| ||| |.||
BL02443___rbs 1 ATGAAAAAAACATTAACGGT--TTTCACCG----CATTGGCGCTTCTGTT 44
BSNT_05481___ 42 TTTGTTAACCGCCTGTTCGCTTGAGCCTCCCCAATGGGCAAAGCC---TT 88
|.||| |||||||.|||||.|||||.||..||||||||||||| |
BL02443___rbs 45 TCTGT---CCGCCTGCTCGCTGGAGCCGCCGGAATGGGCAAAGCCGAAT- 90
BSNT_05481___ 89 CAAACTCGGGGAACAA--AAAGGATTTCACCATCGGCTTGTCCGTCTCAA 136
||| |||.|| ||.||||.|.|..|||||.||.||.|||||||
BL02443___rbs 91 -AAA------GAAAAAGGAACGGATATTAAAATCGGTTTATCTGTCTCAA 133
BSNT_05481___ 137 CGCTTAATAATCCTTTTTTTGTCTCATTAAAAAAGGGTATCGAAAAAGAA 186
|..|.||.|||||.|||||.||.||||||||.||.||..|.|..||||||
BL02443___rbs 134 CTTTGAAAAATCCGTTTTTCGTTTCATTAAAGAACGGAGTTGTCAAAGAA 183
BSNT_05481___ 187 GCTGAAAAACGGGGAATGAAAGTGATCATTGTTGATGCACAAAATGATTC 236
||..||||||..||.||..|||||||..|.||.||||||||..|.|||||
BL02443___rbs 184 GCCAAAAAACAAGGGATAGAAGTGATTGTCGTCGATGCACAGGACGATTC 233
BSNT_05481___ 237 ATCGAAACAGACGAGTGACGTGGAAGATTTAATTCAGCAAGGTGTTGATG 286
..|.||.|||||||.|||.||.||||||.|..|.||||||||.|||||.|
BL02443___rbs 234 GGCAAAGCAGACGAATGATGTCGAAGATCTTCTGCAGCAAGGCGTTGACG 283
BSNT_05481___ 287 CATTATTAATCAACCCGACTGATTCTTCGGCGATCTCAACGGCAGTAGAA 336
|.|||||.|||||||||.|.||.||.||.||.||||||||.|||||..||
BL02443___rbs 284 CTTTATTGATCAACCCGGCGGACTCCTCCGCCATCTCAACTGCAGTCCAA 333
BSNT_05481___ 337 TCTGCAAA--CGCAGTCGGTGTGCCCGTCGTAACAATCGATCGATCTGCC 384
||.||.|| ||| |.||..|.||.|||||.||..|.||.||.||.|||
BL02443___rbs 334 TCGGCCAATTCGC--TTGGCATTCCGGTCGTCACCCTTGACCGCTCCGCC 381
BSNT_05481___ 385 GAACAAGGAAAAGTTGAAACTCTCGTTGCTTCCGATAATGTAAAAGGCGG 434
|||.|.||||||||.|||||.|||||.|||||.|||||.|||||||||||
BL02443___rbs 382 GAAAACGGAAAAGTAGAAACGCTCGTCGCTTCAGATAACGTAAAAGGCGG 431
BSNT_05481___ 435 TGAAATGGCCGCGGCGTTTATTGCCGATAAACTTGGAAAAGGAGCAAAGG 484
..|||||||.||||..|||||||..||..|.||.||.|||||.|||||.|
BL02443___rbs 432 ACAAATGGCAGCGGACTTTATTGTGGAGCAGCTCGGCAAAGGCGCAAAAG 481
BSNT_05481___ 485 TGGCAGAGCTTGAAGGCGTCCCCGGCGCATCTGCCACACGGGAACGCGGC 534
||||.||||||||||||||||||||||||||.||.|||.|||||||.|||
BL02443___rbs 482 TGGCTGAGCTTGAAGGCGTCCCCGGCGCATCGGCAACAAGGGAACGGGGC 531
BSNT_05481___ 535 TCAGGATTTCATAACATCGCAGACCAAAAGCTCCATGTTGTCACAAAACA 584
|||||.||||||||.|.|||.||..|.|||||..||||..||.|.||.||
BL02443___rbs 532 TCAGGGTTTCATAAGACCGCTGATGACAAGCTGAATGTGATCGCCAAGCA 581
BSNT_05481___ 585 ATCAGCTGACTTTGACCGCACGAAAGGCCTGACTGTCATGGAAAACCTGC 634
|.||||.|||||||||||.||.|||||..|||..||||||||.|||||.|
BL02443___rbs 582 AACAGCCGACTTTGACCGGACAAAAGGGTTGAACGTCATGGAGAACCTCC 631
BSNT_05481___ 635 TGCAGGGACATCCTGATATCCAAGCTGTTTTTGCTCACAACGATGAAATG 684
|.||.|||.|.||||||||.|||||.|||||.||.||.||.||.||||||
BL02443___rbs 632 TTCAAGGAAACCCTGATATTCAAGCGGTTTTCGCACATAATGACGAAATG 681
BSNT_05481___ 685 GCGCTCGGTGCTCTCGAAGCAATTAACAGCTCGGGAAAAGACATATTGGT 734
||||||||.||..|.|||||.||.|..|||||.||.|||||.||..|.||
BL02443___rbs 682 GCGCTCGGCGCGATTGAAGCGATCAGAAGCTCAGGGAAAGAGATTCTTGT 731
BSNT_05481___ 735 AATCGGCTTTGACGGCAATAAAGACGCGCT-----CGCTTCCATTAAAGA 779
..|||||||.|||||||||.||||.|||.| ||.||| |.|.
BL02443___rbs 732 CGTCGGCTTCGACGGCAATGAAGATGCGGTTAAAGCGGTTC-----AGGC 776
BSNT_05481___ 780 CGGAAAGCTGTCAGCCACCGTAGCTCAGCAGCCTGAATTAATCGGTAAAC 829
||||.|..||||.||.||..|.||.||||||||||||||.|||||.||.|
BL02443___rbs 777 CGGAGACATGTCGGCAACGATCGCCCAGCAGCCTGAATTGATCGGCAAGC 826
BSNT_05481___ 830 TGGC--TACAGAAGCAGCAGATGATATTTTGCACGGAAAAAAAGTGCAAA 877
|.|| ||| ||||.||....|||||||||.||||.||||||||..|||
BL02443___rbs 827 TCGCCGTAC--AAGCGGCCCGCGATATTTTGAACGGCAAAAAAGTTGAAA 874
BSNT_05481___ 878 AAACAATATCCGCGCCTCTCAAACTAGAAACACAAAAATAA 918
||||.|||.||||.||.||||||||.|||||..||||.|||
BL02443___rbs 875 AAACGATACCCGCACCGCTCAAACTGGAAACGAAAAAGTAA 915
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