Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05480 and BL02442

See Amino acid alignment / Visit BSNT_05480 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:37
# Commandline: needle
#    -asequence dna-align/BSNT_05480___rbsC.1.5803.seq
#    -bsequence dna-align/BL02442___rbsC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05480___rbsC-BL02442___rbsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05480___rbsC-BL02442___rbsC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05480___rbsC
# 2: BL02442___rbsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 987
# Identity:     734/987 (74.4%)
# Similarity:   734/987 (74.4%)
# Gaps:          42/987 ( 4.3%)
# Score: 2691.0
# 
#
#=======================================

BSNT_05480___      1 ATGAAAACGGAACAAC------TGCAAACAGAACAAA-----AACG--GA     37
                     ||||||||   .||||      ||.|||      |||     ||.|  ||
BL02442___rbs      1 ATGAAAAC---TCAACCGGCTGTGAAAA------AAAGCCTTAATGTTGA     41

BSNT_05480___     38 TTCACTTCGACGGAGTCATGCAAAAACTCGGCCCGTTTCTTGGTTTATTT     87
                     |||          .||.||||||||.|||||.||||||||.||..|..|.
BL02442___rbs     42 TTC----------TGTAATGCAAAAGCTCGGTCCGTTTCTCGGCCTGATC     81

BSNT_05480___     88 ATTCTCGTTATCATTGTATCTATT-TTAAATCCAAGCTTTCTTGAACCGC    136
                     ||||||||..||||.||||| ||| ||||||||.||||||.|.||||||.
BL02442___rbs     82 ATTCTCGTCGTCATCGTATC-ATTGTTAAATCCGAGCTTTTTAGAACCGT    130

BSNT_05480___    137 TGAATATTTTAAACCTGCTTCGACAGGTCGCCATTAACGGATTAATCGCG    186
                     |.||||||||||||.||.|..||||.|||||||||||.|...|.||||||
BL02442___rbs    131 TAAATATTTTAAACTTGTTAAGACAAGTCGCCATTAATGCGCTGATCGCG    180

BSNT_05480___    187 TTCGGGATGACCTTTGTCATTTTGACAGGCGGCATTGATCTTTCTGTCGG    236
                     ||.||.|||||||||||||||||.||.||||||||.||||||||.|||||
BL02442___rbs    181 TTTGGCATGACCTTTGTCATTTTAACCGGCGGCATCGATCTTTCCGTCGG    230

BSNT_05480___    237 CGCTATTCTTGCCCTGTCAAGTGCTTTAGTTGCGGGAATGATTGTATCCG    286
                     .||.|||.|.||.||||||||.||.||..|.||.||||||||.|   |||
BL02442___rbs    231 AGCGATTTTGGCGCTGTCAAGCGCATTGATCGCCGGAATGATCG---CCG    277

BSNT_05480___    287 GTG---TTGATCCGGTTCTCGCGATCATCCTTGGCTGTATCATTGGTGCC    333
                     |.|   |.|||||.|||.||||..|||||.|.|||||..|.||.||.|||
BL02442___rbs    278 GCGGCATCGATCCTGTTTTCGCCGTCATCATCGGCTGCCTGATCGGAGCC    327

BSNT_05480___    334 GTACTAGGCATGATCAACGGATTATTGATTACTAAAGGAAAAATGGCGCC    383
                     .|.||.|||.||.|||||||..|.||.||.||.|||||.||||||||.||
BL02442___rbs    328 CTGCTCGGCTTGGTCAACGGGCTGTTAATCACGAAAGGTAAAATGGCCCC    377

BSNT_05480___    384 CTTTATCGCCACGCTTGCGACCATGACTGTGTTTCGCGGACTGACGCTAG    433
                     .||.|||||.||.|||||.||.|||||..|.||.||||||.|||||.|.|
BL02442___rbs    378 GTTCATCGCAACACTTGCCACAATGACGATTTTCCGCGGATTGACGATGG    427

BSNT_05480___    434 TGTATACAGATGGAAATCCGATTACCGGACTTGGCACAAACTACGCTTTT    483
                     |.||||||||.||.|||||||||||.||.||.||||...||||||..||.
BL02442___rbs    428 TTTATACAGACGGCAATCCGATTACAGGGCTCGGCAACCACTACGGCTTC    477

BSNT_05480___    484 CAGATGTTCGGATGCGGTTACTTTTTAGGCATTCCTGTACCGGCGATTAC    533
                     |||.|.||||||.|||||||||||||||||||.||.||.||.||||||||
BL02442___rbs    478 CAGCTTTTCGGACGCGGTTACTTTTTAGGCATCCCCGTCCCTGCGATTAC    527

BSNT_05480___    534 GATGGTTCTTGCCTTTGTCATCCTTTGGGTGCTTCTTCATAAAACACCAT    583
                     .||||.....||||||.|||||||.||||||.|.|||||.|||||.||.|
BL02442___rbs    528 AATGGCAGCCGCCTTTATCATCCTCTGGGTGATCCTTCACAAAACGCCTT    577

BSNT_05480___    584 TCGGCCGCCGAACGTACGCTATCGGCGGCAACGAAAAAGCCGCTCTCATT    633
                     ||||||||||.||.||.||.||||||||.||.||||||||.||..|.||.
BL02442___rbs    578 TCGGCCGCCGCACATATGCAATCGGCGGAAATGAAAAAGCGGCCTTGATC    627

BSNT_05480___    634 TCAGGCATCAAAGTGACGCGCGTGAAAGTGATGATCTATTCTTTAGCCGG    683
                     ||.|||||.|||||..|||||||.|||.|||||||.||||||.|.||.||
BL02442___rbs    628 TCGGGCATTAAAGTTCCGCGCGTCAAAATGATGATTTATTCTCTTGCAGG    677

BSNT_05480___    684 GCTTTTATCCGCTCTTGCAGGTGCCATATTGACTTCCCGCCTGCATTCGG    733
                     .||.||||||||..|.||.||.|||||.|||||.||.||.||..|.||.|
BL02442___rbs    678 CCTATTATCCGCGTTGGCTGGAGCCATCTTGACGTCACGGCTAAACTCAG    727

BSNT_05480___    734 CCCAGCCGACTGCGGGGGAATCGTACGAACTTGATGCTATCGCGGCAGTC    783
                     ||||||||||.||.||....||.||.|||||.||.||.||.||.||||||
BL02442___rbs    728 CCCAGCCGACGGCAGGCACTTCCTATGAACTCGACGCCATAGCCGCAGTC    777

BSNT_05480___    784 GTCTTAGGCGGAACAAGTCTTTCCGGCGGCCGAGGACGCATTGTTGGCAC    833
                     ||.||||||||.|||||.|||.||||.||..|||||||.||||..|||||
BL02442___rbs    778 GTATTAGGCGGCACAAGCCTTGCCGGAGGAAGAGGACGAATTGCCGGCAC    827

BSNT_05480___    834 GTTAATCGGGGTGCTGATCATCGGCACACTTAATAACGGGCTT-AATCTG    882
                     ..|.|||||.||.|||||||||||.||..|.|||||| ||||| ||.|||
BL02442___rbs    828 ACTCATCGGCGTCCTGATCATCGGAACGTTGAATAAC-GGCTTGAACCTG    876

BSNT_05480___    883 CTTGGCGTCTCATCATTTTATCAGCTGGTTGTCAAAGGGATTGTCATCTT    932
                     |||||||||||.||.||||..||..||||.||||||||..|.|||||.||
BL02442___rbs    877 CTTGGCGTCTCTTCCTTTTTCCAAATGGTCGTCAAAGGTGTCGTCATTTT    926

BSNT_05480___    933 AATTGCGGTATTGTTAGACCGCAAGAAGTCAGCATAG    969
                     .||.||.||..||.|.|||||||||||.||.||.||.
BL02442___rbs    927 GATCGCAGTCCTGCTGGACCGCAAGAAATCCGCTTAA    963


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05480 and BL02442

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
