Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05479 and BL02441
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05479___rbsA.1.5803.seq
# -bsequence dna-align/BL02441___rbsA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05479___rbsA-BL02441___rbsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05479___rbsA-BL02441___rbsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05479___rbsA
# 2: BL02441___rbsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1528
# Identity: 1153/1528 (75.5%)
# Similarity: 1153/1528 (75.5%)
# Gaps: 92/1528 ( 6.0%)
# Score: 4330.5
#
#
#=======================================
BSNT_05479___ 1 ATGCAGATTGAAATGAAAGACATTCATAAAGCATTCGGAAAAAACCAGGT 50
|||||.|||.|||||||.||||||..||||||.||.||..||||||||||
BL02441___rbs 1 ATGCATATTAAAATGAAGGACATTTTTAAAGCCTTTGGCCAAAACCAGGT 50
BSNT_05479___ 51 GCTATCAGGCGTTTCTTTTCAGCTCTTACCTGGCGAGGTTCACGCGTTAA 100
|||.||.||||||||.||..||||...|...||.||.||.|||||.||||
BL02441___rbs 51 GCTGTCCGGCGTTTCCTTCGAGCTTCAAGAAGGTGAAGTCCACGCTTTAA 100
BSNT_05479___ 101 TGGGAGAAAACGGCGCCGGCAAGTCCACGCTTATGAACATTCTGACAGGC 150
|||||||||||||||||||.|||||.||.||.|||||..|..||||.||.
BL02441___rbs 101 TGGGAGAAAACGGCGCCGGAAAGTCGACACTCATGAATCTGTTGACTGGA 150
BSNT_05479___ 151 CTGCACAA-------ATCG----GATCAAGGTCAAATCAGCATAAACGGA 189
||.||||| |.|| ||||.|| ||..|||||
BL02441___rbs 151 CTTCACAAGCTGGACAGCGGAACGATCGAG-----------ATCGACGGA 189
BSNT_05479___ 190 AACGAAACGTATTTTTCCAATCCGAAAGAAGCAGAACAGCATGGAATAGC 239
||.||||||||||||||..||||.||.|||||.||||||.|.|||||.||
BL02441___rbs 190 AAAGAAACGTATTTTTCAGATCCAAAGGAAGCCGAACAGAACGGAATCGC 239
BSNT_05479___ 240 CTTTATCCATCAGGAATTGAATATCTGGCCGGAAATGACTGTTCTGGAGA 289
|||||||||||||||..||||.||.|||||.||||||||.|||.||||.|
BL02441___rbs 240 CTTTATCCATCAGGAGCTGAACATTTGGCCTGAAATGACCGTTTTGGAAA 289
BSNT_05479___ 290 ATCTATTTATCGGTAAAGAGATATCCTCCAAGCTGGGCGTTTTACA-AAC 338
||||.||||||||.|.||||.|.||.|||||.||.||..|||||.| |||
BL02441___rbs 290 ATCTGTTTATCGGCAGAGAGCTTTCTTCCAAACTTGGATTTTTAAACAAC 339
BSNT_05479___ 339 AAGAAAAATGAAAGCGCTAGCAAAAGAGCAATTTGACAAACTCTCTGTCT 388
||| ||||||||||||||||||||||||||..||||.|..|||..|||||
BL02441___rbs 340 AAG-AAAATGAAAGCGCTAGCAAAAGAGCAGCTTGAAAGGCTCGGTGTCT 388
BSNT_05479___ 389 CTCTTTCTCTCGATCAAGAAGCCGGCGAATGTTCTGTCGGACAGCAGCAA 438
|..|||||||.||..||||||||||.||.|||||.|||||.|||||||||
BL02441___rbs 389 CAATTTCTCTTGAAAAAGAAGCCGGAGACTGTTCCGTCGGCCAGCAGCAA 438
BSNT_05479___ 439 ATGATCGAAATCGCAAAAGCGCTTATGACAAATGCCGAGGTAATCATTAT 488
||||||||||||||||||||.|||||||||.|.||..|.||.|||||.||
BL02441___rbs 439 ATGATCGAAATCGCAAAAGCCCTTATGACAGACGCGAAAGTGATCATCAT 488
BSNT_05479___ 489 GGATGAACCGACCGCAGCGTTGACTGAACGTGAAATCAGCAAGCTCTTTG 538
||||||||||||.|||||||||||.|||.|.|||||....||.||.||.|
BL02441___rbs 489 GGATGAACCGACGGCAGCGTTGACAGAAAGAGAAATTGAAAAACTGTTCG 538
BSNT_05479___ 539 AGGTCATTACAGCGTTAAAAAAGAACGGCGTCTCCATTGTCTATATTTCG 588
..|||||||.|||.|||||.||.||||||||||||||.||||||||.||.
BL02441___rbs 539 GCGTCATTAGAGCATTAAAGAAAAACGGCGTCTCCATCGTCTATATATCC 588
BSNT_05479___ 589 CATCGCATGGAAGAAATTTTTGCGATTTGCGACAGAATTACCATCATGCG 638
||.||||||||||||||.||..|||||||||||||.||.||..|.|||||
BL02441___rbs 589 CACCGCATGGAAGAAATCTTCACGATTTGCGACAGGATCACGGTGATGCG 638
BSNT_05479___ 639 TGACGGAAAAACGGTGGATACAACAAAC--ATCTCAGAAACTGATTTTGA 686
.||.||||||||||||| |||..|||| ||..|.||.||.||.|||.|
BL02441___rbs 639 CGATGGAAAAACGGTGG--ACACGAAACGGATTCCCGACACCGACTTTCA 686
BSNT_05479___ 687 TGACGTCGTCAAAAAAATGGTCGGACGGGAGCTGACTGAACGATATCC-A 735
|||.||.||.|||||.||||||||||||||||||||.|||||.||||| .
BL02441___rbs 687 TGAAGTGGTGAAAAAGATGGTCGGACGGGAGCTGACCGAACGCTATCCTG 736
BSNT_05479___ 736 AAACGCACTCCTTCTCTCGGTGACAAA-------------GTATTCGAGG 772
|||..|| |.|||| ||..||||.|
BL02441___rbs 737 AAAGACA--------------GCCAAATCCGGGACGCGTCGTCCTCGAAG 772
BSNT_05479___ 773 TGAAAAATGCCTCTGTAAAAGGGAGT-TTTGAAGATGTCAGCTTTTATGT 821
|.||..|.||.|| ..||||.||||| ||..||.||.|||||||||..||
BL02441___rbs 773 TCAAGCAGGCATC-CAAAAAAGGAGTCTTCCAAAATATCAGCTTTTCCGT 821
BSNT_05479___ 822 TCGGTCCGGTGAAATCGTCGGTGTTTCAGGATTGATGGGAGCCGGCCGTA 871
.||.|||||.|||||||||||..||||||||.|||||||.|||||.||.|
BL02441___rbs 822 CCGCTCCGGCGAAATCGTCGGGATTTCAGGACTGATGGGTGCCGGGCGCA 871
BSNT_05479___ 872 CAGAAATGATGAGAGCGCTGTTCGGCGTTGACAGGCTGGACACGGGTGAG 921
|.||..|||||||||||.|.|||||..|.||...|||.|||.||||.||.
BL02441___rbs 872 CCGAGCTGATGAGAGCGGTTTTCGGGCTCGATCCGCTTGACTCGGGAGAC 921
BSNT_05479___ 922 ATATGGATCGCTGGGAAAAAAACGGCTATTAAGAACCCGCAG-GAAGCCG 970
||.|..||||..||.||||||.||||..|.||.||.||| || ||.||||
BL02441___rbs 922 ATTTTCATCGAAGGCAAAAAAGCGGCGCTCAAAAAACCG-AGCGATGCCG 970
BSNT_05479___ 971 TGAAAAAAGGTCTCGGCTTTATTACAGAGAATCGCAAGGATGAAGGGCTC 1020
|..||||.||..|||||||||||||.|||||.||||||||||||||.||.
BL02441___rbs 971 TTCAAAAGGGAATCGGCTTTATTACCGAGAACCGCAAGGATGAAGGACTT 1020
BSNT_05479___ 1021 CTGCTCGACACCTCGATCCGCGAAAATATTGCCCTGCCCAATCTGTCCAG 1070
.||||||||||.||.|||.|.||||||||.|||||.||.|||||..||||
BL02441___rbs 1021 GTGCTCGACACGTCCATCAGAGAAAATATCGCCCTTCCGAATCTCGCCAG 1070
BSNT_05479___ 1071 CTTCTCACC-AAAGG--GGCTCATTGATC---ACAAGCG-GGAGGCTGAG 1113
|||.||.|| ||||| || ||||| | |.||||| |.|| ||.
BL02441___rbs 1071 CTTTTCGCCGAAAGGATGG---ATTGA-CAAAAAAAGCGAGCAG---GAA 1113
BSNT_05479___ 1114 TTTGTCGATCTGTTAATTAAACGCCTCACTATCAAAACAGCATCACCGGA 1163
|||||||||||..|.||.||.||.||.||.||||||||.|.|||.|||||
BL02441___rbs 1114 TTTGTCGATCTTCTGATCAAGCGGCTGACGATCAAAACGGAATCGCCGGA 1163
BSNT_05479___ 1164 AACGCACGCACGCCATTTGTCAGGTGGAAACCAGCAAAAAGTGGTGATAG 1213
|||.|||||.||..|..|.|||||.||||||||||||||||||||.||.|
BL02441___rbs 1164 AACCCACGCGCGAAACCTTTCAGGAGGAAACCAGCAAAAAGTGGTCATTG 1213
BSNT_05479___ 1214 CCAAGTGGATCGGCATCGGACTGAAAGTGCTTATCTTGGATGAGCCAACC 1263
||||.||||||||||||||.|..||||||||.||.|||||||||||.|||
BL02441___rbs 1214 CCAAATGGATCGGCATCGGCCCTAAAGTGCTGATTTTGGATGAGCCGACC 1263
BSNT_05479___ 1264 AGAGGTGTGGATGTTGGCGCCAAACGAGAGATTTATACGCTGATGAATGA 1313
|||||.||.|||||.|||||.|||.|.|||||||||..|||||||||.||
BL02441___rbs 1264 AGAGGCGTCGATGTCGGCGCGAAAAGGGAGATTTATCAGCTGATGAACGA 1313
BSNT_05479___ 1314 GCTGACCGAACGCGGCGTCGCTATCATCATGGTGTCATCAGAGCTGCCTG 1363
||||||.||.|||||||||||.|||.|||||||.||.||||||||.||.|
BL02441___rbs 1314 GCTGACAGACCGCGGCGTCGCGATCGTCATGGTCTCTTCAGAGCTCCCCG 1363
BSNT_05479___ 1364 AAATTCTGGGAATGAGCGATCG-GATTATCGTTG---TCCATGAAGGCAG 1409
|.|||||.||.||||||||.|| | ||.||| ||||||||||.|.
BL02441___rbs 1364 AGATTCTCGGGATGAGCGACCGCG----TCCTTGTAATCCATGAAGGAAC 1409
BSNT_05479___ 1410 AATCAGCGGAGA--AATCCATGCGCGA---GAAGCAACACAAGAACGAAT 1454
..|.|||||||| .|||.| || ||.||.||.|||||||||||
BL02441___rbs 1410 GCTAAGCGGAGAGCTATCAA-----GAAATGATGCCACGCAAGAACGAAT 1454
BSNT_05479___ 1455 TATGACACTTGCCACGGGAGGGCGGTAA 1482
|||||||||.||.||.|||||.||||||
BL02441___rbs 1455 TATGACACTCGCTACAGGAGGACGGTAA 1482
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