Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05465 and BL02436
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:36
# Commandline: needle
# -asequence dna-align/BSNT_05465___ywtF.1.5803.seq
# -bsequence dna-align/BL02436___ywtF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05465___ywtF-BL02436___ywtF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05465___ywtF-BL02436___ywtF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05465___ywtF
# 2: BL02436___ywtF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1065
# Identity: 646/1065 (60.7%)
# Similarity: 646/1065 (60.7%)
# Gaps: 186/1065 (17.5%)
# Score: 1741.5
#
#
#=======================================
BSNT_05465___ 1 ATGGAGGAACGATTACAACACAAGAAGAAAAAGAGACGTCTGAAAAAATG 50
|| |..|||||..||.|..|.||||||||||||| ||.|.||||||
BL02436___ywt 1 AT---GCTACGATCGCAGCGAACGAAGAAAAAGAGA---CTAAGAAAATG 44
BSNT_05465___ 51 GGTGAAATTCACAATCGGTTTGT--TTGCTATTCTAATTATCGTAACTG- 97
||||||||.|.|| |.||||.| |||| || |.|||.|.||.|
BL02436___ywt 45 GGTGAAATACTCA--CTGTTTTTCATTGC----CT--TAATCCTGACGGC 86
BSNT_05465___ 98 ----------GTTCAATTGGTACCTATGCTTA-TATAAAGT--TGAACAA 134
| || ||...||||||.|| |||||||| .||||
BL02436___ywt 87 GACGGCAGCCG--CA---GGCGGCTATGCGTACTATAAAGTGGCGAAC-- 129
BSNT_05465___ 135 TGCGTCAAAACAAGCACATATTGA-----TCTAAA--TGAAAATGGTCAA 177
||.||.|||.|.||.|| |.|.| ||.|.| |||| ||.
BL02436___ywt 130 -GCCTCCAAAGATGCGCA-AGTCACCCTTTCCAGAGGTGAA------CAG 171
BSNT_05465___ 178 TCCGTTAAACGTATCAAAGAATTTGATCCGAAAAAAGA------CT-CAT 220
|||||.||.||.||.|||||.||..|.||.|||||||| || ||
BL02436___ywt 172 TCCGTCAAGCGGATTAAAGAGTTCAACCCTAAAAAAGATAACTTCTCCA- 220
BSNT_05465___ 221 TTACTGTATTACTTTTAGGAATTGATTCAAGAAATTC-----CAAAG-GT 264
|.|||| |..|.||.||||||.|..| || ||||| .|
BL02436___ywt 221 -TCCTGT-----TGATGGGGATTGATGCCCG----TCCCGGACAAAGCAT 260
BSNT_05465___ 265 GAGACGGTTGACGATGCTCGAAGTGACGCTAATG--TCTTAGTTACCTTT 312
| |||.|.|..|||||.||.|| .||| |||| |..||.||.
BL02436___ywt 261 G--------GACAAAGAACGAAGCGATGC-GATGGTTCTT-GCCACGTTC 300
BSNT_05465___ 313 AATCGAAAAAACAAATCAGCAACAATGTTAAGTATACCGAGAGATTCTTA 362
||..|||||.|||||||.|..|.|.|.||.||.||.|||.|.|||||.||
BL02436___ywt 301 AACAGAAAAGACAAATCGGTGAAACTATTGAGCATCCCGCGGGATTCCTA 350
BSNT_05465___ 363 TGTTAACATCCCTGGTTATGGATATGATAAATTTACACATGCCCATGCAT 412
|||.||||||||.||....||.||.||||||.|.||.||||||||..|||
BL02436___ywt 351 TGTCAACATCCCCGGACGCGGCTACGATAAAATAACGCATGCCCACTCAT 400
BSNT_05465___ 413 ATGGAGG----------AGTAAAACTCTCGGCGAAAACAATTGAAAACCT 452
..||.|| |||| |..||||..|.||||||||
BL02436___ywt 401 TAGGCGGGCGCGACCTTAGTA----------CAGAAACCGTCGAAAACCT 440
BSNT_05465___ 453 TCTAGATATTCCAGTAGATTATGTAATAGAAAGTAATTTTGACGCTTTTA 502
.||.||.|||||.||.|||||.||.||.|||...||||||...|||||.|
BL02436___ywt 441 GCTCGACATTCCGGTTGATTACGTCATGGAAGCCAATTTTTCAGCTTTCA 490
BSNT_05465___ 503 AAGATGTTGTGGATGAATTAAATGGAGTTAGT----ATAAATGTAAAAAA 548
|.||.||.||.||||||.| .||.|.| || ||.|...|.|||.|
BL02436___ywt 491 AGGAAGTAGTTGATGAACT---CGGCGGT-GTACCGATCACGATCAAAGA 536
BSNT_05465___ 549 TGAAAAAATAGTTAATCAAATTAAAAAAGATACAAAAGGAAAAGTC-ACA 597
.||..|.||.||....||.||||||||.|||||.|||||.|||||| ||.
BL02436___ywt 537 AGACTATATTGTCCGGCAGATTAAAAAGGATACGAAAGGCAAAGTCAACC 586
BSNT_05465___ 598 TTAAAAACTGGCGTTCAAACACTAAACGGTGAAGAAGCACTAGCTTATGT 647
|| .||||.||||..||.||.||...|||.||||||||.||.||||||||
BL02436___ywt 587 TT-CAAACAGGCGAGCAGACGCTGGGCGGAGAAGAAGCCCTCGCTTATGT 635
BSNT_05465___ 648 AAGGACACGTAAAGCTGATACCGATTTTCAACGCGGTCAAAGACAGATGG 697
|||.||..|.|||||.|||||.||.||..|.|||||..|..|.|||||||
BL02436___ywt 636 AAGAACGAGAAAAGCCGATACGGACTTGAAGCGCGGCGAGCGCCAGATGG 685
BSNT_05465___ 698 AAGTCCT-AAATGCCATCATAAAAAAATCTAAATCATTAAGCTCAATACC 746
|||||.| |||| |.||.||.||.|||||.|||||..|.|..||.||.||
BL02436___ywt 686 AAGTCATCAAAT-CGATTATCAACAAATCCAAATCGCTTACTTCCATTCC 734
BSNT_05465___ 747 AGCATATGATGATATCGTTGAT--AGTTTAGGGGAA--AATTTAAAGATG 792
.||.||.||.||||||.||||| ||| .|||| ||..||..||||
BL02436___ywt 735 GGCTTACGACGATATCCTTGATACAGT----CGGAAAGAACGTATCGATG 780
BSNT_05465___ 793 AATTTATCTTTAAATGATGCAATCGGTTTATTTCCTTTTATAACTTC--T 840
||.||.||..|.||||||||||||||..|..|.||.|||||.||.|| |
BL02436___ywt 781 AACTTGTCGCTGAATGATGCAATCGGACTGATCCCGTTTATGACGTCCAT 830
BSNT_05465___ 841 TTAAAATCAGTTGATACTGAACAACTTACCGGTTC---TGACATGTATCT 887
|.||| |.||.||||| || ||| |||.|
BL02436___ywt 831 TCAAA--CGGTCGATAC-----------CC--TTCAATTGAAA------- 858
BSNT_05465___ 888 CTACAGCTCTCGTGAGCGAAAA----------AAACTATATTATTTGAAA 927
|.||||||..| |||.|.||.|||||..|.
BL02436___ywt 859 -----------GGGAGCGATTATCAACCGGGCAAAGTCTACTATTTCCAG 897
BSNT_05465___ 928 CTTGAT-AGTGAAAAGCTAGAAGAAGTCAAAACCGAACTAAAA----AAT 972
|||||| || |||||.||..|.|||.|.||....|||.||||| |.|
BL02436___ywt 898 CTTGATCAG-GAAAACCTCAACGAAATTAAGCAGGAATTAAAACAGCAGT 946
BSNT_05465___ 973 GACATAGATAACTGA 987
.|.||..||||
BL02436___ywt 947 TAGATGTATAA---- 957
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