Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03298 and BL02435

See Amino acid alignment / Visit BSNT_03298 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:59
# Commandline: needle
#    -asequence dna-align/BSNT_03298___kduD.1.5803.seq
#    -bsequence dna-align/BL02435___kduD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03298___kduD-BL02435___kduD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03298___kduD-BL02435___kduD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03298___kduD
# 2: BL02435___kduD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 805
# Identity:     547/805 (68.0%)
# Similarity:   547/805 (68.0%)
# Gaps:          80/805 ( 9.9%)
# Score: 1774.0
# 
#
#=======================================

BSNT_03298___      1 ATGGGTTATCTACATGA--CGT-CTTTTCATTAGAAGGAAAAACAGCGCT     47
                     |||||.|||||   |||  ||| .||||||.|.|||||.|||||.|||||
BL02435___kdu      1 ATGGGATATCT---TGAATCGTATTTTTCACTTGAAGGCAAAACGGCGCT     47

BSNT_03298___     48 GGTGACAGGCCCGGGAACAGGGATCGGTCAAGGTATTGCCAAAGCCCTAG     97
                     .||.||||||||||||||.||.|||||..||||.||||||.||||.||.|
BL02435___kdu     48 TGTCACAGGCCCGGGAACGGGAATCGGCAAAGGGATTGCCGAAGCGCTGG     97

BSNT_03298___     98 CCGGAGCTGGCGCTGATATTATCGGCACATCACATACAAGCAGTCTGTCT    147
                     |...|||.||.||.|||||.||||||||.||.|||||.|||.|.||...|
BL02435___kdu     98 CAAAAGCGGGAGCGGATATCATCGGCACTTCGCATACGAGCGGACTTGAT    147

BSNT_03298___    148 GAAACACAGCAGCTTGTGGAAAAGGAAGGCCGG----ATATTTACATCTT    193
                     ||||||.|||.|||..|.|||   ||| |||||    |..|||||.||||
BL02435___kdu    148 GAAACAAAGCGGCTGATCGAA---GAA-GCCGGCAGAACGTTTACTTCTT    193

BSNT_03298___    194 TTACA--TTGGACATGAGCAAGCCGGAAGCGATAAAGGATTCTGCAGCTG    241
                     .| ||  || ||.|||.||||.|..||.|.|.|..|||.||.|||     
BL02435___kdu    194 AT-CAGCTT-GATATGGGCAACCTTGACGAGGTCGAGGCTTTTGC-----    236

BSNT_03298___    242 ACCTGTTTGAAAACAGG--------------CAGATCGACATCCTTGTCA    277
                              ||||.|||              ||.||.||.||.||.||.|
BL02435___kdu    237 ---------AAAAGAGGTGCCTGACCGCCATCAAATTGATATTCTCGTTA    277

BSNT_03298___    278 ATAATGCCGGCATTATTCATCGGGAAAAAGCGGAAGATTTTTCAGAAGAG    327
                     |.||.|||||.|..||.|...|.||||||||||..||||||||....|||
BL02435___kdu    278 ACAACGCCGGGACGATCCGCAGAGAAAAAGCGGCTGATTTTTCCCGGGAG    327

BSNT_03298___    328 AACT-GGCAGCACGTACTGAATGTCAATCTACACAGCCTGTTTATTCTGA    376
                     |||| ||.||| .||..|.|||||||||.|..|||||.|.|||.|.||||
BL02435___kdu    328 AACTGGGAAGC-GGTGATCAATGTCAATTTGAACAGCTTATTTTTGCTGA    376

BSNT_03298___    377 CACAGCTTGCT---GGCAGGCACATG-CTGA---AAAGAGGTCACGGAAA    419
                     |.|||   |||   |||.||||.||| .|||   ||||    ||.||.||
BL02435___kdu    377 CGCAG---GCTATCGGCCGGCAGATGATTGAGCGAAAG----CAAGGGAA    419

BSNT_03298___    420 GATTATTAATATTGCCTCTCTCCTGTCTTTTCAAGGCGGCATCCTCGTTC    469
                     .||.||.||||||||||||||.||.||.||||||||.|||||.||.||.|
BL02435___kdu    420 AATCATCAATATTGCCTCTCTTCTTTCATTTCAAGGAGGCATTCTTGTCC    469

BSNT_03298___    470 CGGCTTACACCGCGAGCAAACACGCTGTTGCCGGTTTGACAAAATCATTT    519
                     |.||.||.||.||.||||||||.||.||.|||||.|||||.||.||.|||
BL02435___kdu    470 CTGCATATACGGCAAGCAAACATGCAGTAGCCGGATTGACGAAGTCTTTT    519

BSNT_03298___    520 GCAAATGAGTGGGCAGC-------GTCAGGTATTCAGGTCAACGCAATCG    562
                     ||.|||||.|||||.||       |||       ||||||||.||.||.|
BL02435___kdu    520 GCCAATGAATGGGCGGCTTATAATGTC-------CAGGTCAATGCGATTG    562

BSNT_03298___    563 CCCCAGGCTATATTTCTACTGCCAATACAAAGCCTATTCGGGATGACGAA    612
                     |.||.||||||||..|.||...|||||||||||..||.||.||.||..||
BL02435___kdu    563 CTCCGGGCTATATCGCGACGAACAATACAAAGCAGATCCGCGACGATCAA    612

BSNT_03298___    613 AAGCGAAATGAGGACATTTTAAAGAGAATTCCTGCCGGCCGCTGGGGCCA    662
                     ||.||.||||..||.||.|||||..|.|||||.||||..||||||||.||
BL02435___kdu    613 AACCGCAATGCCGAAATCTTAAAACGGATTCCGGCCGAGCGCTGGGGTCA    662

BSNT_03298___    663 CGCGGATGATATCGGGGGGACTGCAGTCTT--TTTGGCATCACGTGCTTC    710
                     ..|||||||.||.|..||..|.||.||.||  |||  |.||.|..||.||
BL02435___kdu    663 GCCGGATGACATTGCCGGCGCCGCCGTATTCCTTT--CGTCGCCGGCATC    710

BSNT_03298___    711 AGATTATGTAAATGGACATATTTTAGCAGTTGATGGCGGCTGGCTATCCC    760
                     .||||||||.|||||||||.|.|||||.||.||||||||.|||||..|..
BL02435___kdu    711 CGATTATGTGAATGGACATGTGTTAGCCGTCGATGGCGGATGGCTGGCAA    760

BSNT_03298___    761 GCTGA    765
                     |.|.|
BL02435___kdu    761 GGTAA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03298 and BL02435

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
