Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04403 and BL02411
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:34
# Commandline: needle
# -asequence dna-align/BSNT_04403.1.5803.seq
# -bsequence dna-align/BL02411___bioW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04403-BL02411___bioW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04403-BL02411___bioW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04403
# 2: BL02411___bioW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 820
# Identity: 466/820 (56.8%)
# Similarity: 466/820 (56.8%)
# Gaps: 221/820 (27.0%)
# Score: 1475.5
#
#
#=======================================
BSNT_04403 1 ----------------AT----------GAATG---------------GG 9
|| ||||| ||
BL02411___bio 1 ATGAAGGGGGAAGCGTATTACAGTGTGAGAATGAGAGCCTCCGAGAACGG 50
BSNT_04403 10 T-CTCATGAAGACGGCGGAAAGCATATATCCGGCGGAGAACGGCTTATTC 58
| |.||||||||.||.|||||.||.||||||||.|||||.||||||.|.|
BL02411___bio 51 TCCCCATGAAGAGGGGGGAAAACACATATCCGGAGGAGAGCGGCTTGTGC 100
BSNT_04403 59 CTTTCCATGAGATGAA--GCATACAGTCAATGCTTTATTAGAAAAAGGGT 106
|||| |||..|.|.|| | ||.|.||||..|.||||||.||||||||..
BL02411___bio 101 CTTT-CATCGGTTTAAATG-ATGCCGTCAGCGATTTATTGGAAAAAGGTA 148
BSNT_04403 107 TATCCCATTCAAGAGGAAAACCTGATTTTATGCAAATTCAATTTGAAGAG 156
|.||.|||||..|.||.|..||.||.||||||||||||||.||.||....
BL02411___bio 149 TGTCTCATTCGCGGGGCAGGCCGGACTTTATGCAAATTCAGTTCGATCTT 198
BSNT_04403 157 GTACATGAATCGATAAA--------AACCATTCAGC-CATTGCCTGTGTA 197
|||.|.|||.||||||| ||||.|| || ||||| |
BL02411___bio 199 GTAAACGAACCGATAAAGCTTGTTCAACCTTT--GCGCATTG-------A 239
BSNT_04403 198 TACGAATGAA---GTGAGCTGCCCGGGAGAAGGACAAAAGCTTGCCCGAT 244
.||||||||| || |.|.| |||.||||||||||..|||.|||||
BL02411___bio 240 AACGAATGAAACGGT-ATCAG--CGGAAGAAGGACAAGCGCTCGCCCG-- 284
BSNT_04403 245 TGTTATTG----GAAAA----AGAAGGCGTTTCACGAGA-CGTGATTGAA 285
|| ||..| .|..|||| |.|..||.| ||.|.|||||
BL02411___bio 285 ------TGAGCTGATCAGCCGCGCCGGCG-TGCCGGAAAGCGCGGTTGAA 327
BSNT_04403 286 AAAGCGTATGAACAAATCCCAGAAT----GGTCAGATGTCAGGGGTGCGG 331
|||||||.|.||...||..|.|||| ||.| ||.|||||.||.|
BL02411___bio 328 AAAGCGTTTCAAGGCATTGCCGAATACTGGGGC----GTGAGGGGCGCCG 373
BSNT_04403 332 TGTTGTTTGATATTCATACAGGCAAGCGAATGGATCAAACAAAAGAAAAA 381
|.|||||||||||||||.|.|||..|||.||.||...||.||||||||||
BL02411___bio 374 TTTTGTTTGATATTCATTCCGGCCGGCGGATTGACGGAAGAAAAGAAAAA 423
BSNT_04403 382 GGGGTGCGGGTCTCCAGAATGGATTGGCCGGACGCTAATTTTGAAAAATG 431
||.|||||.|||||..|..|.|||||||||||.||..|||||.|||..||
BL02411___bio 424 GGAGTGCGCGTCTCGCGGCTCGATTGGCCGGAAGCCGATTTTCAAAGGTG 473
BSNT_04403 432 GG-CGCTTCACAGTCAC---GTGCCGGCTCATTCAAGAATAAAAGAGGCC 477
|| ||||| .|| .| ||||||.|..||.||.|..|.||||||||.
BL02411___bio 474 GGCCGCTT---TGT-GCGGGGTGCCGCCAAATCCACGGTTGAAAGAGGCG 519
BSNT_04403 478 CTTGCGCTCGCTTCAAAGGTAAGCCGGCACCCGGCAGCCATTGCAGAATT 527
|||||..||||.|||||||||.|...|||||||||.|.|||.||.|||||
BL02411___bio 520 CTTGCCATCGCCTCAAAGGTATGTGAGCACCCGGCCGTCATCGCCGAATT 569
BSNT_04403 528 ATGCTGGTCGGACGATCCGGATTACATAACAGGCTATGTTGCGGGTAAGA 577
||||||||||||.||.||.|||||||||||.|||||||||||||.|||.|
BL02411___bio 570 ATGCTGGTCGGATGACCCTGATTACATAACGGGCTATGTTGCGGCTAAAA 619
BSNT_04403 578 AAATGGGCTATCAGCGTATTACAGCAATGAAAGA--ATACGGGACTGAAG 625
|..||||.||||||||.||.|||...|||||||| || .||||| |||
BL02411___bio 620 AGCTGGGTTATCAGCGGATGACAAAGATGAAAGAGCAT-GGGGAC-GAA- 666
BSNT_04403 626 AG-GGCTGA----------------------------------------- 633
|| |||||.
BL02411___bio 667 AGCGGCTGCCGGATTTTTTTTGTTGATGGATCAGCAGATGTAAAAAGCTG 716
BSNT_04403 633 -------------------------------------------------- 633
BL02411___bio 717 CATAGACGATTTGGAAAAACAGCCTGTATTCATTGGTCAGGAGGTAAATC 766
BSNT_04403 633 -------------------- 633
BL02411___bio 767 ATGAATCAATCATTCGTTGA 786
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