Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04483 and BL02407
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_04483___ytxM.1.5803.seq
# -bsequence dna-align/BL02407___ytxM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04483___ytxM-BL02407___ytxM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04483___ytxM-BL02407___ytxM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04483___ytxM
# 2: BL02407___ytxM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 927
# Identity: 529/927 (57.1%)
# Similarity: 529/927 (57.1%)
# Gaps: 216/927 (23.3%)
# Score: 1310.0
#
#
#=======================================
BSNT_04483___ 1 -----ATGGGAACTGTAAACATAACGGTATCAGATGGTATCCGATATGCA 45
||.|..||||.|| .|||| .||.||| |||..|
BL02407___ytx 1 TTGAAATTGACACTGAAA----GACGG--------CGTTTCC--TATAAA 36
BSNT_04483___ 46 GTGGCAGACGAGGGACCGAATG-CTTCCGAA-----GCCGTCGTCTGTCT 89
.|.|.||||.|.||.| || ||.|.||| |.|| ||.|.|.|
BL02407___ytx 37 ATTGAAGACAATGGCC----TGTCTGCAGAAAAAACGGCG--GTGTTTTT 80
BSNT_04483___ 90 GCACGGGTTTACCGGCAG------CAAACAATCATG----------GAC- 122
|||.||.|||||.||.|| || |||| |||
BL02407___ytx 81 GCATGGCTTTACAGGAAGCGCGGCCA------CATGGGACGGGATAGACG 124
BSNT_04483___ 123 ----TTTTCTTGATGAGATGCTGTCTGATTCACGTTTGATCAAAATTGAT 168
||||| |.|.||||| |||||| |||.|.|..|||
BL02407___ytx 125 GCTATTTTC---AGGGGATGC-GTCTGA-TCAAGCTGAATC--------- 160
BSNT_04483___ 169 TGTTTAGGGCATGGGGAAACCGATGCCCCGCTGAATGGGAAA-----AGA 213
|| .|.||.||.||.|.||||||..|.|| ||.|||.| .|.
BL02407___ytx 161 TG-CTCGGACACGGCGGAACCGACTCGCC-----ATCGGACAGCCGGCGC 204
BSNT_04483___ 214 TACAGCAC----AAGCCGGCAAGTTTCTGACCTTGCCGAGATTTTGAATC 259
||||..|| ||||.|||| .|.||.||...|||.|||||..|||
BL02407___ytx 205 TACACAACAGAGAAGCAGGCA----GCGGATCTCATCGAAATTTTTGATC 250
BSNT_04483___ 260 -----AAT-TAAAA----CTTCACAAAGTGAAATTGATTGGGTATTCTAT 299
||| ||||| ||| |..|.||.||.|||||.||
BL02407___ytx 251 GTTTAAATGTAAAACAGGCTT----------ACCTCATCGGTTATTCAAT 290
BSNT_04483___ 300 GGGAGGAAGGCTTG-CTTACTCTTTTGCGATGACATATCCCGAGCGGGTA 348
|||.||..|||||| |||| ||.||.|||||||...|.||||||||.||.
BL02407___ytx 291 GGGCGGCCGGCTTGCCTTA-TCCTTGGCGATGATTCACCCCGAGCGTGTG 339
BSNT_04483___ 349 TCGGCACTTGTGCTTGAAAGCACGACGCCGGGGCTCAAAACACTTGGGGA 398
||.|..||||||||.||.||||...|.||||||||..|..|.|.||..||
BL02407___ytx 340 TCCGGTCTTGTGCTGGAGAGCAGTTCTCCGGGGCTTGATTCGCCTGAAGA 389
BSNT_04483___ 399 ACG----GCGGGAACGAATTATGCGGGA---CCGG--AAGCTTGCTGATT 439
|.| |||.|.|.|.| ||.||| |||| .|||..||.||
BL02407___ytx 390 AAGAAAAGCGCGCAGGGA----GCAGGACAGCCGGCTCAGCAGGCGGA-- 433
BSNT_04483___ 440 TTATTTTAAGAGACGGGCTCAAAGCGTTTGTTGCGTATTGGGAGAATATC 489
||.||.| |||.||..||||..|.||.||.|..||||||||....||.
BL02407___ytx 434 -TACTTGA--AGAAGGAATCAAGTCTTTCGTAGATTATTGGGAAGGCATT 480
BSNT_04483___ 490 CCTTTGTTTTCATCTCAGC--------------------AGAGGCTGGCT 519
||..|||||.||||.|||| |||
BL02407___ytx 481 CCGCTGTTTGCATCCCAGCTTTCAATGGACCCTTCAAAAAGA-------- 522
BSNT_04483___ 520 GAAGATATTCGGCACAGGATACGATCGGGCCGTCTGCGGAACAATAAGAT 569
||.|.|.|..||..||.| ||||||...||||||..|||
BL02407___ytx 523 -AAAAAAGTGCGCGAAGAA-----------CGTCTGAACAACAATCCGAT 560
BSNT_04483___ 570 CGGGCTTGCGA-ACAGTTTAACCGGCATGGGCACCGGTTCACAGCCTTCC 618
|||.||| ||| .|||.||||.|||.|||||.|||||.||||||||.||.
BL02407___ytx 561 CGGCCTT-CGAGGCAGCTTAATCGGAATGGGGACCGGATCACAGCCGTCT 609
BSNT_04483___ 619 TTCTGGAGC---CGTGTAGAGG----AAATAGATGTTCCTGTGCTTCTGA 661
|..||||.| | || ||.|| ||.|| |||.||||||||.|
BL02407___ytx 610 TGGTGGAACAAAC-TG-AGCGGGATCAATTA-----TCCGGTGCTTCTCA 652
BSNT_04483___ 662 TCTGCGGGGAG--TGGGACGAAAAATTTTGCGCCATCAATCAAGAGGTGC 709
|| |||||.|| | |||..|.||||||..||||||||||.|| .||
BL02407___ytx 653 TC-GCGGGAAGCCT-GGATCAGAAATTTGTCGCCATCAATGAA----AGC 696
BSNT_04483___ 710 AT----AAGATGCTTCCTTCTAG----TAGAATAGAGATTGTTCCAAAAG 751
|| |||..|.|||| || ..|..|.|||||||||..|.|..
BL02407___ytx 697 ATGGCAAAGCGGATTCC----AGCCGCCCGCCTCGAGATTGTTGAACATA 742
BSNT_04483___ 752 CAGGACATACGGTCCATGTGGAACAGCCGCGA-TTGTTTGGTAAAATAGT 800
|.||.|||.||||.|||||||||.|||| ||| ||.|||||||.||||||
BL02407___ytx 743 CCGGTCATGCGGTTCATGTGGAAGAGCC-CGATTTTTTTGGTAGAATAGT 791
BSNT_04483___ 801 GAGTGAGTT--TTTGACAAGCATCTGA 825
.|||||||| |||.| |||.|.
BL02407___ytx 792 AAGTGAGTTTATTTTA-AAGTAG---- 813
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