Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04468 and E2

See Amino acid alignment / Visit BSNT_04468 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence dna-align/BSNT_04468___rpmE2.1.5803.seq
#    -bsequence dna-align/BL02403___rpmE2.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04468___rpmE2-BL02403___rpmE2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04468___rpmE2-BL02403___rpmE2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04468___rpmE2
# 2: BL02403___rpmE2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 250
# Identity:     195/250 (78.0%)
# Similarity:   195/250 (78.0%)
# Gaps:           5/250 ( 2.0%)
# Score: 744.0
# 
#
#=======================================

BSNT_04468___      1 ATGAAAGAAGGAATTCATCCAAAGAAC-CACAAAGTGATATTTCAGGATG     49
                     ||||||..|...||||||||.|| ||| .|..|||||||.||||||||||
BL02403___rpm      1 ATGAAACCAAATATTCATCCGAA-AACTTATCAAGTGATCTTTCAGGATG     49

BSNT_04468___     50 TCAACAGCGGCTACCGTTTTCTCAGCACCTCTACGAAAACATCTAATGAA     99
                     |.||||||||.|||||||||.|.|||..|||.||.|||||.||..||||.
BL02403___rpm     50 TAAACAGCGGGTACCGTTTTTTAAGCCGCTCAACTAAAACTTCCGATGAG     99

BSNT_04468___    100 ACAGCAGAGTGGGAAGACGGAAACACATATCCTGTCATTAAAGTAGAGGT    149
                     ||.||.||||||||||||||.||.||.|||||.||.||.|||||.|||||
BL02403___rpm    100 ACGGCCGAGTGGGAAGACGGCAAGACGTATCCCGTTATAAAAGTTGAGGT    149

BSNT_04468___    150 AAGTTCTGACACGCATCCGTTTTATACAGGCCGCCAGAAATTCAATGAAA    199
                     .||.|||||.||.||||||||||||||.||..|.||||||||||||||||
BL02403___rpm    150 GAGCTCTGATACCCATCCGTTTTATACCGGAAGACAGAAATTCAATGAAA    199

BSNT_04468___    200 AAGGCGGACGAGTTGAGCAGTTCAAAAAACGCTATAACATGGGGAAATAA    249
                     .|||||||.|.||.||.||||||||.|||.|.|.|||.||||   |.|||
BL02403___rpm    200 GAGGCGGAAGGGTCGAACAGTTCAAGAAAAGATTTAATATGG---ATTAA    246


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