Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03936 and BL02398
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:57
# Commandline: needle
# -asequence dna-align/BSNT_03936.1.5803.seq
# -bsequence dna-align/BL02398___cypE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03936-BL02398___cypE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03936-BL02398___cypE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03936
# 2: BL02398___cypE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3461
# Identity: 1529/3461 (44.2%)
# Similarity: 1529/3461 (44.2%)
# Gaps: 1429/3461 (41.3%)
# Score: 4198.5
#
#
#=======================================
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 1 ATGAACAAGTTAGATGGAATTCCAATCCCTAAAACTTACGGGCCGCTCGG 50
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 51 CAACCTGCCTTTGCTTGACAAAAACAGGGTCTCCCAGTCACTTTGGAAAA 100
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 101 TCGCGGATGAGATGGGGCCTATCTTTCAATTTAAGTTTGCGGATGCGATT 150
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 151 GGGGTTTTTGTGTCCAGCCATGAACTGGTTAAAGAAGTCTCTGAAGAATC 200
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 201 CCGTTTTGACAAAAACATGGGGAAGGGGCTATTGAAAGTTCGCGAGTTCA 250
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 251 GCGGAGACGGGCTCTTTACAAGCTGGACGGAAGAACCCAATTGGCGGAAA 300
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 301 GCCCACAACATCCTTCTGCCGAGCTTCAGCCAGAAAGCGATGAAGGGATA 350
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 351 CCATCCCATGATGCAGGATATCGCCGTCCAGCTCATTCAAAAGTGGTCCC 400
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 401 GTCTCAATCAGGATGAAAGCATTGATGTGCCGGACGATATGACGCGGCTG 450
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 451 ACGCTGGACACGATCGGCTTATGCGGGTTTAACTACCGCTTTAACAGCTT 500
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 501 CTACCGTGAAGGGCAGCATCCGTTTATTGAGAGCATGGTCCGGGGTTTGA 550
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 551 GCGAAGCGATGAGACAGACGAAGCGCTTCCCGCTGCAGGATAAGCTGATG 600
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 601 ATTCAAACGAAGCGCCGGTTTAACAGCGATGTCGAGTCGATGTTTTCTCT 650
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 651 TGTTGACCGGATCATCGCTGACCGGAAGCAGGCCGAGAGTGAAAGCGGAA 700
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 701 ATGACCTCTTGTCGCTTATGCTTCATGCGAAAGACCCTGAGACCGGCGAA 750
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 751 AAACTGGATGATGAGAATATCCGCTATCAAATTATTACATTTTTGATTGC 800
BSNT_03936 0 -------------------------------------------------- 0
BL02398___cyp 801 CGGACACGAGACGACGAGCGGTTTATTATCGTTTGCAATCTATCTGCTCC 850
BSNT_03936 1 -----------------------------------------------GTG 3
|||
BL02398___cyp 851 TGAAGCATCCGGATAAGCTTAAGAAAGCGTATGAAGAAGCAGACCGCGTG 900
BSNT_03936 4 TTAACGGATGACACG------CCTGAATATAAACAAATCCAGCAGCTCAA 47
.|.||.||| |.|| || ||.|||||..|.||||||||.||
BL02398___cyp 901 CTGACCGAT--CCCGTCCCATCC----TACAAACAGGTTCAGCAGCTGAA 944
BSNT_03936 48 ATACACTCGGATGGTTTTAAATGAAACCCTCAGACTGTATCCAACAGCTC 97
|||||..||.|||.||||.||||||.|..|.||.||.|..||.||.||.|
BL02398___cyp 945 ATACATCCGAATGATTTTGAATGAATCGATAAGGCTTTGGCCGACGGCAC 994
BSNT_03936 98 CGGCTTTTTCTCTATATGCGAAGGAGGATACTGTTCTAGGCGGGGAATAT 147
|||||||.|||||.|||||.||.||.||.||.|||.|.||.||..|||||
BL02398___cyp 995 CGGCTTTCTCTCTTTATGCAAAAGAAGAAACGGTTATCGGGGGAAAATAT 1044
BSNT_03936 148 CCGAT--CAGCAAAGGGCAGCCAGTCACTGTTTTAATTCCAAAACTGCAC 195
..||| || |||||.|||...||.||.||..|.||.||||||||||||
BL02398___cyp 1045 TTGATTCCA--AAAGGACAGAGCGTTACAGTGCTCATCCCAAAACTGCAC 1092
BSNT_03936 196 CGGGACCAAAACGCTTGGGGGCCGGATGCGGAAGATTTCCGTCCGGAACG 245
.|.||.||||.||..|||||....|||||.||.|..|||||.||.|||||
BL02398___cyp 1093 AGAGATCAAAGCGTCTGGGGAGAAGATGCCGAGGCATTCCGGCCTGAACG 1142
BSNT_03936 246 GTTTGAG--GAT---CCTTCAAGTATCCCTCACCATGCGTATAAGCCGTT 290
|||.||| ||| | ||.||.||....||.||.||.||.|||||
BL02398___cyp 1143 GTTCGAGCAGATGGAC-----AGCATTCCGGCGCACGCATACAAACCGTT 1187
BSNT_03936 291 TGGAAACGGACAGCGCGCTTGTATTGGCATGCAGTTTGCTCTTCAAGAAG 340
|||.|||||.||..|.||.||.||.|||||||||||.||.|||||.||||
BL02398___cyp 1188 TGGCAACGGCCAAAGGGCATGCATCGGCATGCAGTTCGCCCTTCATGAAG 1237
BSNT_03936 341 CGACAATGGTTCTCGG------TCTT--GTA--TTAAAGCATTTTGAATT 380
||||..|.||.||||| |||| ||| || .||.|||||
BL02398___cyp 1238 CGACGCTTGTGCTCGGCATGATTCTTCAGTACTTT----GATCTTGAA-- 1281
BSNT_03936 381 GATTAACCATACTGGCTACGAACTAAAAATCAAAGAAGCATTAACGATCA 430
||| |||.|...||||.||.|.||.|||||||||.|..|.||..|.|
BL02398___cyp 1282 GAT----CATGCAAACTACCAATTGAAGATCAAAGAATCGCTGACATTAA 1327
BSNT_03936 431 AGCCGGATGATTTTAAAATTACTGTGAAACCGCGGAAAACAGCGGCAAT- 479
|.|||||||.|||.|.|||....||||..|||.||||||.||..|||||
BL02398___cyp 1328 AACCGGATGGTTTCACAATCCGGGTGAGGCCGAGGAAAAAAGAAGCAATG 1377
BSNT_03936 480 ----CAATG--------TACAG--AGAAAAGAACAGGCAGAAATCAAAGC 515
|.||| | ||| .|||.|||||.| |..||
BL02398___cyp 1378 ACGGCGATGCCGGGCGCT-CAGCCTGAAGAGAACGG---------ACGGC 1417
BSNT_03936 516 AGAAACAAAGCC------------------AAAAGAAACCAAACCTAAAC 547
||.||.||.|.| |||| ||..|
BL02398___cyp 1418 AGGAAGAACGGCCTTCCGCACCGGCGGCGGAAAA-----------TACGC 1456
BSNT_03936 548 ACGGCACACCTTTACTCGTTCTTTACGGTTCAAACCTTGGGACAGCTGAG 597
||||.||.|||.|.||.||.||.|||||||||||.||.||.|||||.||.
BL02398___cyp 1457 ACGGAACCCCTCTTCTTGTGCTCTACGGTTCAAATCTCGGCACAGCCGAA 1506
BSNT_03936 598 GGAATAGCCGATGAATTGGCTT-CTCAAG--GC-CGCCAG-ATGGGCTTT 642
|..||.|| |||...|||| ||.||| || ||..|| |.|||.||.
BL02398___cyp 1507 GAGATTGC----GAAGGAGCTTGCTGAAGAAGCGCGTGAGCAAGGGTTTC 1552
BSNT_03936 643 ACAGCTGAAACGGCTCCGCTTGATGATTATATCGGCAAGC----TCCCTG 688
|||||.| .|||||...|||||||.| ||..|||.|| ||||.|
BL02398___cyp 1553 ACAGCCG-GACGGCGGAGCTTGATCA----ATACGCAGGCGCCATCCCGG 1597
BSNT_03936 689 AAGAAGGGGCAGTCGTCATTGTAACGGCTTCTTATAATGGGTCGCCGCCT 738
.|||||||||.||..|||||||.||||||||.|||||.||....|||||.
BL02398___cyp 1598 CAGAAGGGGCTGTTATCATTGTGACGGCTTCCTATAACGGAAACCCGCCC 1647
BSNT_03936 739 GATAATGCTGCCGGC-------TTTGTAGAGTGGCTGAAAGAGCTTG--- 778
||| ||| || |||||..|.||||| .||||.||
BL02398___cyp 1648 GAT-----TGC--GCAAAGGAATTTGTCAATTGGCT---TGAGCATGATC 1687
BSNT_03936 779 AGGAAGGCCAATTGAAAGGTGTTTCCTATGCGGTATTCGGCTGCGGGAAC 828
||..||.|.|.|||...|||||....||||||||||||||||||||.|||
BL02398___cyp 1688 AGACAGACGATTTGCGTGGTGTCAAATATGCGGTATTCGGCTGCGGTAAC 1737
BSNT_03936 829 CGGAGCTGGGCCAGCACGTATCAGCGGATTCCCCGCCTGATTGATGACA- 877
||.||||||||||||||.||.|||||||||||.|||||||| |||||
BL02398___cyp 1738 CGCAGCTGGGCCAGCACCTACCAGCGGATTCCGCGCCTGAT---TGACAG 1784
BSNT_03936 878 -----TGATGAAAGCAAAGGGGGCATCGC------GTTTAACAGAGATTG 916
|| ||||..||||| ||| |.|..||| ||.|||
BL02398___cyp 1785 CGTATTG--GAAAAAAAAGG------CGCCCAAAGGCTGCACA-AGCTTG 1825
BSNT_03936 917 GGGAAGGTGACGCCGCCGATGATTTTGAAAGCCATCGCGAGTCTTGGGAA 966
|.|||||.||.||.|.|||||||||||||.|.||....|||||.|||.||
BL02398___cyp 1826 GAGAAGGGGATGCAGGCGATGATTTTGAAGGACAGTTTGAGTCATGGAAA 1875
BSNT_03936 967 AA----------CCGCTTCTGGAAGGAAACGATGGACGCATTTGAT-ATT 1005
.| ||||||.| |.|||.||| |||| | |||
BL02398___cyp 1876 TATGATCTGTGGCCGCTTTT---AAGAACCGA-------ATTT--TCATT 1913
BSNT_03936 1006 -----AA--CGAAATAGCC--------CAGAAAGAAGACAG----GCCTT 1036
|| || |||| |||||| .|||||| |||||
BL02398___cyp 1914 GGCCGAACCCG----AGCCGAATCAAACAGAAA-CAGACAGGCAAGCCTT 1958
BSNT_03936 1037 CAT-TATCGATTGCTTTTCTCAGTGAAGCG-----ACGGAAACGCCGGTT 1080
|| |.||||.|.|.| ||.|| .|||...|||||.|.
BL02398___cyp 1959 -ATCTGTCGAGTTCGT---------AAACGCACCTGCGGCTTCGCCGCTG 1998
BSNT_03936 1081 GCTAAAGCATATGGCGCGTTTGAAGGGGTTGTGTT--------AGA---- 1118
||||||||.||| .|| ||||| |||
BL02398___cyp 1999 GCTAAAGCTTAT----------CAG-----GTGTTCACAGCGAAGATATC 2033
BSNT_03936 1119 ---GAATCGAGAACTCCAG-------ACAGC---TGACAGCACGCGTTCA 1155
.||.||||||||.||| |.||| .|| |||| ||
BL02398___cyp 2034 GGCAAACCGAGAACTGCAGTGTGAAAAGAGCGGGAGA-AGCA------CA 2076
BSNT_03936 1156 ACCTGCCATATTGAATTGGAAA----TTCCGGCTGGTAAAA-------CA 1194
| |.||||||||| |.| ||||.| || ||
BL02398___cyp 2077 A---GGCATATTGAA----ATATCGCTTCCTG-------AAGGCGCCGCA 2112
BSNT_03936 1195 TATAAAGAAGGCGATCATATCGGAATCCTGCCGAAGAACAGCAGGGAGCT 1244
|||.|.||.||.||.|||.||||..|.||.|||.|.||||||...|.|||
BL02398___cyp 2113 TATCAGGAGGGAGACCATCTCGGTGTGCTACCGCAAAACAGCGAAGTGCT 2162
BSNT_03936 1245 TGTT--CAGCGGGTTCTCAGCCGATTCGGTT---------TGCAGTCCAA 1283
..|| |.|| |.||.|||||.|.||.||.| ||.| |.||
BL02398___cyp 2163 GATTGGCCGC-GTTTTTCAGCGGTTTGGGCTGAACGGAAATGAA--CAAA 2209
BSNT_03936 1284 TCATGTGATAAAAGTAAGCGG--------AAGCGCTCATATGGCTCATCT 1325
| |.||| |.||||| |||| || |.|||.|
BL02398___cyp 2210 T--TCTGA------TTAGCGGCCGGAATCAAGC------AT--CACATTT 2243
BSNT_03936 1326 GCCGATGGATCGGCC-------GATCAAAG---TTGCGGATTT----ATT 1361
|||..||||..|||| | |||||| || ||| |||
BL02398___cyp 2244 GCCTTTGGAGAGGCCCGTTCATG-TCAAAGACCTT-----TTTCAACATT 2287
BSNT_03936 1362 GTCGTCCTATGTAGAGCTGCAGGAACCGGCATCAAGGCTTCAGCTTCGGG 1411
| |||| |||||.|||||||||||..|||||...|||.|.||.|
BL02398___cyp 2288 G-CGTC-------GAGCTCCAGGAACCGGCCACAAGGGCCCAGATACGCG 2329
BSNT_03936 1412 AGCTGGCCTCTTATACAGTTTGTCCGCCGCATCAAAAAGAGCTGGAACAG 1461
|||||||..||.||||.|||||||||||.|||||....|||||.|||.|.
BL02398___cyp 2330 AGCTGGCGGCTCATACTGTTTGTCCGCCTCATCAGCGCGAGCTTGAAGAC 2379
BSNT_03936 1462 CTCGTTTCAGATGATGGCATTTACAAAGAGCAGGTACTTGCA-AAACGTC 1510
||..|...|||||| |.|.||.||.||.||.|| .|||.| ||.||.|
BL02398___cyp 2380 CTGCTGAAAGATGA---CGTCTATAAGGATCAAGT-GTTGAATAAGCGGC 2425
BSNT_03936 1511 TTACCATGCTTGATTTTTTAGAGGATTATCCTGCTTGCGAAATGCCGTTT 1560
|.||.||||||||..|..|.|||.|.||.||.||.||.|||.|||||||.
BL02398___cyp 2426 TGACAATGCTTGACCTGCTTGAGCAATACCCGGCCTGTGAACTGCCGTTC 2475
BSNT_03936 1561 GAACGGTTTTTAGCACTTTTGCCATCACTAAAACCGAGATACTATTCCAT 1610
|..||.|||.|.||.|||.|.||..|.|||||||||||.||||||||.||
BL02398___cyp 2476 GCCCGTTTTCTGGCGCTTCTTCCTCCGCTAAAACCGAGGTACTATTCGAT 2525
BSNT_03936 1611 TTCAAGCTCACCGAAAGTTCA-----TGCAAATATCGTGAGCATGACGGT 1655
|||.||.||.|||.|..||.| .|||||.| |||||.||.||
BL02398___cyp 2526 TTCCAGTTCGCCGCAGCTTAACCCGCGGCAAACA-----AGCATCACCGT 2570
BSNT_03936 1656 AGGAGTTGTGAAAGCCTCAGCATGGAGCGGCCGAGGTGAATACCGGGGTG 1705
....||.||.|..|.|.|.||.|.|||||||||.||..|.||...|||.|
BL02398___cyp 2571 CTCTGTCGTAAGTGGCCCGGCGTTGAGCGGCCGCGGGCATTATAAGGGAG 2620
BSNT_03936 1706 TCGCCTCTAATTATTTAGCAGAG--TTGAATACAGGTGATGCAGCAG--- 1750
|.||.||.||.|||.|.||.| | ||| |..|.||.||.|| |
BL02398___cyp 2621 TTGCATCGAACTATCTCGCCG-GCCTTG-AGCCGGGAGACGC----GATT 2664
BSNT_03936 1751 -CCTGCTTCATTCGTACGCCGCAGTCCGGATTCCAGATGCCGGATGAGCC 1799
|.||.|||||..|...|||.|||||.||.||||.|.|.||.||.||.||
BL02398___cyp 2665 TCGTGTTTCATCAGAGAGCCTCAGTCAGGCTTCCGGCTTCCCGAAGATCC 2714
BSNT_03936 1800 TGAAACGCCTATGATTATGGTCGGGCCGGGCACAGGAATTGCGCCATTCA 1849
||||||.||..||||.|||||||||||||||||.|||||.||.||.|.|.
BL02398___cyp 2715 TGAAACACCGGTGATCATGGTCGGGCCGGGCACCGGAATCGCCCCTTACC 2764
BSNT_03936 1850 GGGGCTTTATTCAG--------------GCAAGAT--CGGTTTTGAAGAA 1883
|.||.|||.||||| ||..||| ||||.|
BL02398___cyp 2765 GCGGATTTCTTCAGGCGCGCCGCATCCAGCGCGATGCCGGTGT------- 2807
BSNT_03936 1884 GGAAGGAAGCACCCTTGGTGAAGCACTTTTATACTTCGGCTGCCGCCGCC 1933
|||| ||.||||||||.|.|||.|||||||||||||||||.|
BL02398___cyp 2808 -----GAAG----CTCGGTGAAGCGCATTTGTACTTCGGCTGCCGCCGTC 2848
BSNT_03936 1934 CGGACCATGACGACCTTTACAGAGAAGAGCTGGATCAAGCGGAACAGGAA 1983
||.||.|.||....||.||..||||.|||.||||.|||||||||.||||.
BL02398___cyp 2849 CGAACGAAGATTTTCTGTATCGAGACGAGTTGGAGCAAGCGGAAAAGGAC 2898
BSNT_03936 1984 GGTTTGGTCACAATCCGCCGATGC-TAC-------TC-----------GC 2014
||..|.|| |.||| ||| ||| || ||
BL02398___cyp 2899 GGAATCGT--CCATC------TGCATACAGCGTTTTCCCGGCTTGAGGGC 2940
BSNT_03936 2015 GCGTCAAAAACGAACCAAAAGAATATGTCCAGCACTTGCTCA-AGCAAGA 2063
..|.|.||||| ||||||.||..|.||||||| || |.||
BL02398___cyp 2941 CGGCCGAAAAC-----------ATATGTGCAAGATTTGCTCAGAG-AGGA 2978
BSNT_03936 2064 TACGCAGAAATTGATGA--CACTCATTGAA--AAAGGGGCTCATATTTAC 2109
| |||| ..|||.||| ||||..||||| ||.|.||| |...|.||.
BL02398___cyp 2979 T--GCAG-CCTTGCTGATTCACTTGTTGAACGAAGGCGGC-CGCCTGTAT 3024
BSNT_03936 2110 GTATGCGGTGATGGATCACAAATGGCTCCTGATGTAG-AGAAGACTT--T 2156
||.|||||.||.|||...|..||||||||.|.|||.| |.||| ||| |
BL02398___cyp 3025 GTGTGCGGAGACGGAAGCCGCATGGCTCCAGCTGTTGAACAAG-CTTTGT 3073
BSNT_03936 2157 GCGATTGGCGTATGAAGC--TGAAAAAGGAGCAAGTCAGGAAGAATC--- 2201
|||| ||||||| .|| .|.|.|.||.||.||||.||||||.||
BL02398___cyp 3074 GCGA--GGCGTAT--CGCATAGTACAGGGTGCGAGTCGGGAAGAGTCGCA 3119
BSNT_03936 2202 -AGCT--------------------GAATGGC----TGCAAAAGCTGCAA 2226
|||| |||.||| ||||||.|.||.|.
BL02398___cyp 3120 AAGCTGGCTGTCCGCACTTTTAGAAGAAGGGCGCTATGCAAAGGATGTAT 3169
BSNT_03936 2227 GATCAAAGACG----------------TTATGTGAAAGACGTTTGGA--- 2257
| .|||| |.|||||||.|..|..||.|
BL02398___cyp 3170 G-----GGACGGCGGCGTTTCCCAACATAATGTGAAGGCGGACTGCATTG 3214
BSNT_03936 2258 CAGGAATGTAA 2268
||.|||.||||
BL02398___cyp 3215 CAAGAACGTAA 3225
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