Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03938 and BL02397
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:57
# Commandline: needle
# -asequence dna-align/BSNT_03938___yrhI.1.5803.seq
# -bsequence dna-align/BL02397.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03938___yrhI-BL02397.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03938___yrhI-BL02397.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03938___yrhI
# 2: BL02397
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity: 368/653 (56.4%)
# Similarity: 368/653 (56.4%)
# Gaps: 175/653 (26.8%)
# Score: 949.0
#
#
#=======================================
BSNT_03938___ 1 ------------------------ATGATTATGAAAGCGTCAGTC-TCAC 25
|.||||||..|.||.||..|| || |
BL02397 1 ATGGAATCGGAAAGCAAATATCAGAAGATTATCGAGGCTTCGCTCGTC-C 49
BSNT_03938___ 26 TTTTTACGGAAAGGGGTTTTGACGCTACCACTATTCCTATGATAGCTGA- 74
||||..||||.||.||.||||||||..|.||.|||||.|||||.||.||
BL02397 50 TTTTCGCGGACAGAGGCTTTGACGCCGCAACCATTCCGATGATCGCCGAT 99
BSNT_03938___ 75 ACGTGCTCATGTAGGGACAGGAACGATCTATCGTTATTTTGACAGCAAAG 124
|.| ||..|.||.||..||||.||.|||||.||.||.|||||||||||.|
BL02397 100 AAG-GCAAACGTCGGTGCAGGCACCATCTACCGCTACTTTGACAGCAAGG 148
BSNT_03938___ 125 AAACACTCGTTAACGTACTGTTTCAAGAAAGCATCCAGCGATTTACGGAA 174
||.||||.||.|||||..||||.|||||.||..|..||.||||||..|||
BL02397 149 AAGCACTTGTAAACGTCTTGTTCCAAGACAGTGTGAAGAGATTTAAAGAA 198
BSNT_03938___ 175 AAACTGA-AGCAAGACGTTTCAGAATTGCCTG-----TCAGAGAAGGC-- 216
|| || || |.||.|..| || |||| || ||.||||
BL02397 199 AA---GATAG-AGGAGGGCT----AT--CCTGAAGATTC--AGCAGGCAT 236
BSNT_03938___ 217 ----------TTTCACCACGTATTTT--GCTGTCTCGTTC-AGTTT---- 249
|||||.||| ||||| ||||.|| .||| |||||
BL02397 237 AAAAAAACAATTTCAGCAC--ATTTTCCGCTGCCT-TTTCGAGTTTTCTC 283
BSNT_03938___ 250 ACGAAAGAGAGCGACTATGCGCTTTTTTTTCTTGAA----ACAAAAAAAG 295
|.|||| |.| .|.|||||||.|.||||.|.||| || |||
BL02397 284 AGGAAA-ATA---TCCATGCGCTGTATTTTTTGGAAATTGAC-----AAG 324
BSNT_03938___ 296 A--TGCTCATTACTTAAATCATACAAGCAAAAAAATGATAGAAAATC--- 340
| | ||||||||||.|.| .||||||.|
BL02397 325 ACCT-CTCATTACTTGACT-------------------GAGAAAAGCCGC 354
BSNT_03938___ 341 -------TGACTCAAATGCTTGATGAC-------TATTTT---AATAAGG 373
|||...||.||||.|||..| |||||| ||.||||
BL02397 355 GAGGTCTTGAACGAACTGCTGGATTTCATCTATTTATTTTTTGAAAAAGG 404
BSNT_03938___ 374 GAAAAGCGGAAGGCGTGATTCGC----AGCCTGCCCTCTAATGTGTTAAT 419
| |||||||..|||.|||||||| .||||.|||.| |.|.||| .
BL02397 405 G-AAAGCGGCCGGCATGATTCGCCCTTTGCCTTCCCAC-ATTTTGT---C 449
BSNT_03938___ 420 TGCGATTGTATTAGGGGCGT---TTCTCAAGATATATC---AGCTCGTTC 463
.||..|||||||.||.|||| ||| |||| || ||.|.||..
BL02397 450 GGCTGTTGTATTCGGAGCGTTCGTTC-----ATAT-TCAGAAGTTGGTAA 493
BSNT_03938___ 464 AAACAGGTGATATAGAGATGGAC---ACTGATTTAATTACTGA------- 503
.|.||||.||..|.|| |||| ||.|| |||||
BL02397 494 GAGCAGGGGAATTCGA---GGACCCTACCGA-------ACTGATGGAGGA 533
BSNT_03938___ 504 -ATTGGAACAATGCTGCTGGGACGCCATTAAGCTTCATTCATCACAAAAA 552
||| |||.||||.|.||||||.||..||||.|.||||..||.|
BL02397 534 GATT-GAAGAATGTTCCTGGGATGCTGTTAAACATCATGGATGA------ 576
BSNT_03938___ 553 TAG 555
BL02397 576 --- 576
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