Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03938 and BL02397

See Amino acid alignment / Visit BSNT_03938 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:57
# Commandline: needle
#    -asequence dna-align/BSNT_03938___yrhI.1.5803.seq
#    -bsequence dna-align/BL02397.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03938___yrhI-BL02397.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03938___yrhI-BL02397.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03938___yrhI
# 2: BL02397
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity:     368/653 (56.4%)
# Similarity:   368/653 (56.4%)
# Gaps:         175/653 (26.8%)
# Score: 949.0
# 
#
#=======================================

BSNT_03938___      1 ------------------------ATGATTATGAAAGCGTCAGTC-TCAC     25
                                             |.||||||..|.||.||..|| || |
BL02397            1 ATGGAATCGGAAAGCAAATATCAGAAGATTATCGAGGCTTCGCTCGTC-C     49

BSNT_03938___     26 TTTTTACGGAAAGGGGTTTTGACGCTACCACTATTCCTATGATAGCTGA-     74
                     ||||..||||.||.||.||||||||..|.||.|||||.|||||.||.|| 
BL02397           50 TTTTCGCGGACAGAGGCTTTGACGCCGCAACCATTCCGATGATCGCCGAT     99

BSNT_03938___     75 ACGTGCTCATGTAGGGACAGGAACGATCTATCGTTATTTTGACAGCAAAG    124
                     |.| ||..|.||.||..||||.||.|||||.||.||.|||||||||||.|
BL02397          100 AAG-GCAAACGTCGGTGCAGGCACCATCTACCGCTACTTTGACAGCAAGG    148

BSNT_03938___    125 AAACACTCGTTAACGTACTGTTTCAAGAAAGCATCCAGCGATTTACGGAA    174
                     ||.||||.||.|||||..||||.|||||.||..|..||.||||||..|||
BL02397          149 AAGCACTTGTAAACGTCTTGTTCCAAGACAGTGTGAAGAGATTTAAAGAA    198

BSNT_03938___    175 AAACTGA-AGCAAGACGTTTCAGAATTGCCTG-----TCAGAGAAGGC--    216
                     ||   || || |.||.|..|    ||  ||||     ||  ||.||||  
BL02397          199 AA---GATAG-AGGAGGGCT----AT--CCTGAAGATTC--AGCAGGCAT    236

BSNT_03938___    217 ----------TTTCACCACGTATTTT--GCTGTCTCGTTC-AGTTT----    249
                               |||||.|||  |||||  ||||.|| .||| |||||    
BL02397          237 AAAAAAACAATTTCAGCAC--ATTTTCCGCTGCCT-TTTCGAGTTTTCTC    283

BSNT_03938___    250 ACGAAAGAGAGCGACTATGCGCTTTTTTTTCTTGAA----ACAAAAAAAG    295
                     |.|||| |.|   .|.|||||||.|.||||.|.|||    ||     |||
BL02397          284 AGGAAA-ATA---TCCATGCGCTGTATTTTTTGGAAATTGAC-----AAG    324

BSNT_03938___    296 A--TGCTCATTACTTAAATCATACAAGCAAAAAAATGATAGAAAATC---    340
                     |  | ||||||||||.|.|                   .||||||.|   
BL02397          325 ACCT-CTCATTACTTGACT-------------------GAGAAAAGCCGC    354

BSNT_03938___    341 -------TGACTCAAATGCTTGATGAC-------TATTTT---AATAAGG    373
                            |||...||.||||.|||..|       ||||||   ||.||||
BL02397          355 GAGGTCTTGAACGAACTGCTGGATTTCATCTATTTATTTTTTGAAAAAGG    404

BSNT_03938___    374 GAAAAGCGGAAGGCGTGATTCGC----AGCCTGCCCTCTAATGTGTTAAT    419
                     | |||||||..|||.||||||||    .||||.|||.| |.|.|||   .
BL02397          405 G-AAAGCGGCCGGCATGATTCGCCCTTTGCCTTCCCAC-ATTTTGT---C    449

BSNT_03938___    420 TGCGATTGTATTAGGGGCGT---TTCTCAAGATATATC---AGCTCGTTC    463
                     .||..|||||||.||.||||   |||     |||| ||   ||.|.||..
BL02397          450 GGCTGTTGTATTCGGAGCGTTCGTTC-----ATAT-TCAGAAGTTGGTAA    493

BSNT_03938___    464 AAACAGGTGATATAGAGATGGAC---ACTGATTTAATTACTGA-------    503
                     .|.||||.||..|.||   ||||   ||.||       |||||       
BL02397          494 GAGCAGGGGAATTCGA---GGACCCTACCGA-------ACTGATGGAGGA    533

BSNT_03938___    504 -ATTGGAACAATGCTGCTGGGACGCCATTAAGCTTCATTCATCACAAAAA    552
                      ||| |||.||||.|.||||||.||..||||.|.||||..||.|      
BL02397          534 GATT-GAAGAATGTTCCTGGGATGCTGTTAAACATCATGGATGA------    576

BSNT_03938___    553 TAG    555
                        
BL02397          576 ---    576


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