Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06180 and BL02380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:08
# Commandline: needle
# -asequence dna-align/BSNT_06180___yycN.1.5803.seq
# -bsequence dna-align/BL02380___yycN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06180___yycN-BL02380___yycN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06180___yycN-BL02380___yycN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06180___yycN
# 2: BL02380___yycN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity: 326/568 (57.4%)
# Similarity: 326/568 (57.4%)
# Gaps: 143/568 (25.2%)
# Score: 882.5
#
#
#=======================================
BSNT_06180___ 1 ------------------------------------------------AT 2
|.
BL02380___yyc 1 TTGATGTTGAAATCGAAAATTAAAATTGACTTGAACAAACCGAGAAAAAA 50
BSNT_06180___ 3 GAC---AATCATGCTGACCCCAATGCAGTCAGAAGAATTT---------C 40
|.| ||||....||||.||||||..|..|||.||.||| |
BL02380___yyc 51 GCCGGAAATCCGTTTGACGCCAATGACGGAAGAGGACTTTAAGATATACC 100
BSNT_06180___ 41 GGTCTTATCTCACATACACAACAAAGCATTACGC---GGAAGAAAAGGTA 87
.|.|.||| || |||.| |||||||||| || ||||| |||
BL02380___yyc 101 AGACCTAT-TC-CATCC-------AGCATTACGCCATGG-AGAAA--GTA 138
BSNT_06180___ 88 AAAGCGGGAACATGG---CTGCCTGAAG--ATGCACAGCTTTTGTCTAAG 132
||||||||.|||||| .||.|.|||| |||.|.| |||
BL02380___yyc 139 AAAGCGGGCACATGGACAGTGGCGGAAGCTATGGAGA----------AAG 178
BSNT_06180___ 133 CAG----GC-GTTTACTGATCTGCTTCCGAGAGGGC-TGGAAACACCCCA 176
||| || ||||.|.|..|| .||.|.|.|.||| |.|||| |.|
BL02380___yyc 179 CAGAAGAGCAGTTTGCGGCCCT-TTTGCCAAACGGCATTGAAA----CGA 223
BSNT_06180___ 177 TC-ACCATT---TGTGGAGCCTCAAGC-TGAATGA-------AAAGGATA 214
|| |||||| |.||| ||||.| ||||.|| ||.|
BL02380___yyc 224 TCAACCATTATCTATGG----TCAATCATGAACGACAGCGGGAACG---- 265
BSNT_06180___ 215 CCGTTGGCTGGCTCTGGATACATGCTGAACCGGAGCATCCGCAGCAGGAA 264
|||..||||||.|.|||||..|.|||||.|||.|.||.||.||..|||||
BL02380___yyc 266 CCGCAGGCTGGGTTTGGATCTACGCTGATCCGCACCACCCTCAAAAGGAA 315
BSNT_06180___ 265 GCGTTTATTTATGATTTCGGGTTATATGAACCGTATCGGGGAAAGGGCTA 314
|||||||||||.|||||||||.|.||||||.||||.||.||..||||...
BL02380___yyc 316 GCGTTTATTTACGATTTCGGGCTTTATGAAGCGTACCGCGGCCAGGGAAT 365
BSNT_06180___ 315 CGCAAAGCAAGCATTGGCAGCATTAGATCATACGGCACGCAGCA--TGGG 362
||...||||.||.||.||.|..|||||..|...|||| .|||| |.||
BL02380___yyc 366 CGGCCAGCAGGCTTTAGCCGTCTTAGAAGAGGAGGCA--AAGCAATTAGG 413
BSNT_06180___ 363 AATCCGCAAGCTGTCCCTTCATGTCTTTGCTCATAATCAGACGGCGCGAA 412
|.||...|||||||||||.|||||.||.||.||||||.|.|..||| |
BL02380___yyc 414 AGTCAAAAAGCTGTCCCTGCATGTATTCGCCCATAATAAAAAAGCG---A 460
BSNT_06180___ 413 AG---CTATATGAGCAAACCGGATTTCAAGA-AACAGA----CGTAGTGA 454
|| |||||||| .|||..|.|||||.||| .||||| |.| |
BL02380___yyc 461 AGCGACTATATGA-AAAAATGAATTTCGAGACGACAGATTTGCAT----A 505
BSNT_06180___ 455 TGAGCAAGAAGA-TTTAA 471
|||||||| ||| |.|||
BL02380___yyc 506 TGAGCAAG-AGACTGTAA 522
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