Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06180 and BL02380

See Amino acid alignment / Visit BSNT_06180 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:08
# Commandline: needle
#    -asequence dna-align/BSNT_06180___yycN.1.5803.seq
#    -bsequence dna-align/BL02380___yycN.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06180___yycN-BL02380___yycN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06180___yycN-BL02380___yycN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06180___yycN
# 2: BL02380___yycN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity:     326/568 (57.4%)
# Similarity:   326/568 (57.4%)
# Gaps:         143/568 (25.2%)
# Score: 882.5
# 
#
#=======================================

BSNT_06180___      1 ------------------------------------------------AT      2
                                                                     |.
BL02380___yyc      1 TTGATGTTGAAATCGAAAATTAAAATTGACTTGAACAAACCGAGAAAAAA     50

BSNT_06180___      3 GAC---AATCATGCTGACCCCAATGCAGTCAGAAGAATTT---------C     40
                     |.|   ||||....||||.||||||..|..|||.||.|||         |
BL02380___yyc     51 GCCGGAAATCCGTTTGACGCCAATGACGGAAGAGGACTTTAAGATATACC    100

BSNT_06180___     41 GGTCTTATCTCACATACACAACAAAGCATTACGC---GGAAGAAAAGGTA     87
                     .|.|.||| || |||.|       ||||||||||   || |||||  |||
BL02380___yyc    101 AGACCTAT-TC-CATCC-------AGCATTACGCCATGG-AGAAA--GTA    138

BSNT_06180___     88 AAAGCGGGAACATGG---CTGCCTGAAG--ATGCACAGCTTTTGTCTAAG    132
                     ||||||||.||||||   .||.|.||||  |||.|.|          |||
BL02380___yyc    139 AAAGCGGGCACATGGACAGTGGCGGAAGCTATGGAGA----------AAG    178

BSNT_06180___    133 CAG----GC-GTTTACTGATCTGCTTCCGAGAGGGC-TGGAAACACCCCA    176
                     |||    || ||||.|.|..|| .||.|.|.|.||| |.||||    |.|
BL02380___yyc    179 CAGAAGAGCAGTTTGCGGCCCT-TTTGCCAAACGGCATTGAAA----CGA    223

BSNT_06180___    177 TC-ACCATT---TGTGGAGCCTCAAGC-TGAATGA-------AAAGGATA    214
                     || ||||||   |.|||    ||||.| ||||.||       ||.|    
BL02380___yyc    224 TCAACCATTATCTATGG----TCAATCATGAACGACAGCGGGAACG----    265

BSNT_06180___    215 CCGTTGGCTGGCTCTGGATACATGCTGAACCGGAGCATCCGCAGCAGGAA    264
                     |||..||||||.|.|||||..|.|||||.|||.|.||.||.||..|||||
BL02380___yyc    266 CCGCAGGCTGGGTTTGGATCTACGCTGATCCGCACCACCCTCAAAAGGAA    315

BSNT_06180___    265 GCGTTTATTTATGATTTCGGGTTATATGAACCGTATCGGGGAAAGGGCTA    314
                     |||||||||||.|||||||||.|.||||||.||||.||.||..||||...
BL02380___yyc    316 GCGTTTATTTACGATTTCGGGCTTTATGAAGCGTACCGCGGCCAGGGAAT    365

BSNT_06180___    315 CGCAAAGCAAGCATTGGCAGCATTAGATCATACGGCACGCAGCA--TGGG    362
                     ||...||||.||.||.||.|..|||||..|...||||  .||||  |.||
BL02380___yyc    366 CGGCCAGCAGGCTTTAGCCGTCTTAGAAGAGGAGGCA--AAGCAATTAGG    413

BSNT_06180___    363 AATCCGCAAGCTGTCCCTTCATGTCTTTGCTCATAATCAGACGGCGCGAA    412
                     |.||...|||||||||||.|||||.||.||.||||||.|.|..|||   |
BL02380___yyc    414 AGTCAAAAAGCTGTCCCTGCATGTATTCGCCCATAATAAAAAAGCG---A    460

BSNT_06180___    413 AG---CTATATGAGCAAACCGGATTTCAAGA-AACAGA----CGTAGTGA    454
                     ||   |||||||| .|||..|.|||||.||| .|||||    |.|    |
BL02380___yyc    461 AGCGACTATATGA-AAAAATGAATTTCGAGACGACAGATTTGCAT----A    505

BSNT_06180___    455 TGAGCAAGAAGA-TTTAA    471
                     |||||||| ||| |.|||
BL02380___yyc    506 TGAGCAAG-AGACTGTAA    522


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