Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06197 and BL02374
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:10
# Commandline: needle
# -asequence dna-align/BSNT_06197___yycI.1.5803.seq
# -bsequence dna-align/BL02374___yycI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06197___yycI-BL02374___yycI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06197___yycI-BL02374___yycI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06197___yycI
# 2: BL02374___yycI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 928
# Identity: 556/928 (59.9%)
# Similarity: 556/928 (59.9%)
# Gaps: 164/928 (17.7%)
# Score: 1377.0
#
#
#=======================================
BSNT_06197___ 1 GTGGAGTGGAATAAGACAAAATCAATCTTCATCGTTGCCTTCCTCATTTT 50
.||||||||||||..||||||.||||||||||..|.|.|||||||||..|
BL02374___yyc 1 ATGGAGTGGAATAGAACAAAAACAATCTTCATTATCGTCTTCCTCATCCT 50
BSNT_06197___ 51 AGATATTTTCTTAGGCTATCAGTTTTTTCAAAAATGGCAGGCTACCGGCA 100
.|||||.||.||.|.||.|||.|..||| ||.||..|||| .
BL02374___yyc 51 TGATATCTTTTTGGCCTTTCAATACTTT-AATAAGCGCAG---------C 90
BSNT_06197___ 101 AAGAATATGAAGT----CATT----AAAAAT----GATGTCGAGCATGAC 138
||.||| .||| .||| |||||| |.|| .||.|.||.
BL02374___yyc 91 AACAAT---CAGTTTCCGATTTTAGAAAAATCAACGCTG--CAGGAGGAT 135
BSNT_06197___ 139 ATGAAGGCCGATCATATCACGTATGAAGGC---TTGAATAAGGAAGCGAC 185
|||||.||.||.|||||..|.| |.||| |||..|||.||..||.|
BL02374___yyc 136 ATGAAAGCAGACCATATTTCAT---ACGGCAATTTGTCTAAAGAGACGTC 182
BSNT_06197___ 186 AGAAGGCT-ATCGGATCACGGCAAATCAAA----AGTCTTTCTCCAAGGA 230
|.|||||| .|| .|||.|.||| |||| |||||||...||| |
BL02374___yyc 183 AAAAGGCTCCTC-AATCTCTGCA---CAAAAGCGAGTCTTTAAGCAA--A 226
BSNT_06197___ 231 G-GAAATTGAGGCGCTGAAGGATCAAAAGCCTTTGATGGACATGCCTAGT 279
| ||.|||.|..||.|.||.|..|||||||| ||.|| |.| ||.|
BL02374___yyc 227 GCGAGATTAAATCGTTAAAAGGGCAAAAGCC---GAAGG-CGT---TAAT 269
BSNT_06197___ 280 GATGAT----CATAAAG-TAACG---AGCCTGA-----AAATGAAGTTTG 316
|| || || |||| .|||| .|.|.|| |||||.||||||
BL02374___yyc 270 GA--ATACCGCA-AAAGAGAACGCTTTGACAGAAATAGAAATGGAGTTTG 316
BSNT_06197___ 317 CAAATCCAATCGCCCTATCAAAGAAGGATATCGAGGAC-GATGCTCAGGC 365
.||..||.||.||.||..|.||.|.|||||| ||.||| .|.||...||.
BL02374___yyc 317 AAACACCCATTGCGCTTCCGAAAACGGATAT-GAAGACAAAAGCAAGGGA 365
BSNT_06197___ 366 ACTTGTTTCTTCGA------AAATTCAAGATGGCGAAAAATATAAGCTTT 409
|.|.|| || |.|||...||.|||.|.||.||.|||||||
BL02374___yyc 366 AATCGT------GAATGAAGAGATTATCGACGGCAATAAGTACAAGCTTT 409
BSNT_06197___ 410 GGAAGGTTGATAAATC--GAAGAAAGAAATTATTTTCTTCCAAACGTACG 457
|||||||.|||||.|| || |||.|.|||.|||||||||||||.||..
BL02374___yyc 410 GGAAGGTCGATAAGTCCGGA--AAACAGATTGTTTTCTTCCAAACCTATA 457
BSNT_06197___ 458 AAGGTCATTATATTTACCAAAAGACCGACAATCCCTCTAAT-ATGAT--- 503
|.||..||||.||||..| |.|||||.||| ||| |||||
BL02374___yyc 458 ATGGGAATTACATTTTTC--AGGACCGGCAA-------AATGATGATAAC 498
BSNT_06197___ 504 -------CGGGC-AAGTGGTGCTGCACTTAAACGGTAAAAACGAGGTTGT 545
.|||| ||||.||.|||.||.|.||...|||||||||.||.||
BL02374___yyc 499 AACGAGATGGGCGAAGTCGTTCTGTACCTGAATAATAAAAACGAAGTCGT 548
BSNT_06197___ 546 GTCATACGACCAGACTACGCTTGA-GACCTTCAAGCAAATTCAGAAA--G 592
|||.||..|.|||.|.|.|||..| ||..||.||| ||.||| ||| |
BL02374___yyc 549 GTCTTATAAGCAGTCAATGCTGCAGGATATTAAAG--AAGTCA-AAACGG 595
BSNT_06197___ 593 AAAGCTTAATTACTGAAATGGATGCGGTTG-AGCTGTTGTACTATCAAAA 641
|||...|.||..|||.|.|.|..||||||| |||| ||||||||.|...|
BL02374___yyc 596 AAAATCTGATCTCTGCAGTCGGCGCGGTTGAAGCT-TTGTACTACCCGGA 644
BSNT_06197___ 642 TCAATTAAAAGAA-TACAGCACTGTGAA-------GAGCTGTAAATTCGG 683
| .|||..||||| |||||||...|.|| |||| |.||
BL02374___yyc 645 T-TATTTGAAGAAGTACAGCAAAATTAAATCAGCCGAGC-------TTGG 686
BSNT_06197___ 684 CTATGTAGCACAATATCCGCTGACAAGTACGCAGGTGCTGGCGCCGGTAT 733
||||.|..|.||.|||||||||.||||..|.||..|..|.|.|||.||.|
BL02374___yyc 687 CTATTTCACGCAGTATCCGCTGGCAAGCGCTCAAATTTTCGTGCCCGTTT 736
BSNT_06197___ 734 GGAGAATTACAGTCGAGTACGATAAAAAAGTGAACGG-CGAGAAAAAGAC 782
||.|.||...|||.|||..|.| ||||| |||.||| ||
BL02374___yyc 737 GGCGGATCGAAGTGGAGCGCAA----------AACGGACGATAAA---AC 773
BSNT_06197___ 783 AGTACAAGAGTATTTTACTGTGAATGCTTTGGA--GAGTACGATT-TTAG 829
..|.||.||..|.||||..|||.||||...||| ||| ||.|| ||..
BL02374___yyc 774 CATTCACGAAGAATTTATCGTGGATGCACGGGACGGAG--CGCTTCTTCA 821
BSNT_06197___ 830 AT----ACAGATCAATGA---------- 843
|| |.|||..||.||
BL02374___yyc 822 ATCACAAGAGAAAAAGGAAAAATCATAA 849
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