Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00039 and BL02357
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:42
# Commandline: needle
# -asequence dna-align/BSNT_00039___dnaX.1.5803.seq
# -bsequence dna-align/BL02357___dnaX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00039___dnaX-BL02357___dnaX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00039___dnaX-BL02357___dnaX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00039___dnaX
# 2: BL02357___dnaX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1741
# Identity: 1316/1741 (75.6%)
# Similarity: 1316/1741 (75.6%)
# Gaps: 89/1741 ( 5.1%)
# Score: 4906.5
#
#
#=======================================
BSNT_00039___ 1 GTGAGTTACCAAGCTTTATATCGAGTATTCAGGCCTCAGCGCTTTGAAGA 50
|||||||||||.|||||||||.||||.||||||||.|||...||||||||
BL02357___dna 1 GTGAGTTACCAGGCTTTATATAGAGTGTTCAGGCCGCAGTTGTTTGAAGA 50
BSNT_00039___ 51 TGTGGTCGGACAAGAACACATTACAAAAACGCTGCAAAATGCCCTTTTGC 100
|||.|||||.||.||.|||||.||.||||||.||||||||||||||||.|
BL02357___dna 51 TGTAGTCGGTCAGGAGCACATCACGAAAACGTTGCAAAATGCCCTTTTAC 100
BSNT_00039___ 101 AAAAAAAGTTTTCTCACGCCTATCTGTTTTCCGGGCCAAGAGGAACCGGA 150
||||.||.|||||.|||||.||||||||||||||.||.||.|||||.|||
BL02357___dna 101 AAAAGAAATTTTCGCACGCTTATCTGTTTTCCGGACCGAGGGGAACGGGA 150
BSNT_00039___ 151 AAAACCAGTGCAGCCAAAATATTTGCTAAGGCTGTCAACTGTGAACATGC 200
|||||.||.||.||.|||.|.|||||.||.||||||||||||||.|..||
BL02357___dna 151 AAAACAAGCGCCGCAAAACTGTTTGCCAAAGCTGTCAACTGTGAGCGCGC 200
BSNT_00039___ 201 TCCTGTTGATGAGCCATGCAACGAATGTGCGGCCTGTAAAGGGATAACAA 250
|||.||...|||.||.||.||||||||..|.||.||.|||||.||.||||
BL02357___dna 201 TCCGGTCAGTGAACCGTGTAACGAATGCTCCGCGTGCAAAGGCATTACAA 250
BSNT_00039___ 251 ACGGGTCAATATCCGATGTCATAGAAATTGACGCCGCTTCTAATAACGGT 300
||||.||.||.||.|||||.||.||||||||||||||||||||.||||||
BL02357___dna 251 ACGGTTCGATTTCAGATGTGATCGAAATTGACGCCGCTTCTAACAACGGT 300
BSNT_00039___ 301 GTTGATGAGATTCGTGACATTCGCGATAAAGTGAAGTTTGCCCCATCGGC 350
||.|||||.||.||.|||||.|||||.||.|||||.||||||||.||.||
BL02357___dna 301 GTAGATGAAATACGCGACATCCGCGACAAGGTGAAATTTGCCCCGTCTGC 350
BSNT_00039___ 351 CGTCACATATAAGGTATATATCATAGATGAGGTGCATATGCTTTCTATCG 400
||||||.|||||.|||||||||||||||||.||.||||||||||||||||
BL02357___dna 351 CGTCACGTATAAAGTATATATCATAGATGAAGTACATATGCTTTCTATCG 400
BSNT_00039___ 401 GCGCTTTTAATGCATTACTAAAAACATTAGAAGAGCCGCCTGAGCATTGT 450
||||.||.||.||..|.||||||||..|.|||||||||||.|||||||||
BL02357___dna 401 GCGCATTCAACGCCCTTCTAAAAACGCTTGAAGAGCCGCCGGAGCATTGT 450
BSNT_00039___ 451 ATCTTCATATTAGCAACAACTGAACCGCACAAAATTCCTTTAACCATTAT 500
|||||.||..|.||||||||.||.||.||.||||||||||||||.|||||
BL02357___dna 451 ATCTTTATTCTCGCAACAACAGAGCCTCATAAAATTCCTTTAACGATTAT 500
BSNT_00039___ 501 CTCTAGATGTCAGCGTTTTGACTTTAAACGAATTACCTCCCAAGCGATTG 550
.||||||||||||||.|||||.|||||..|.||||||||.||.||.||||
BL02357___dna 501 TTCTAGATGTCAGCGATTTGATTTTAAGAGGATTACCTCGCAGGCAATTG 550
BSNT_00039___ 551 TAGGGCGCATGAATAAAATTGTTGATGCTGAACAGCTGCAAGTGGAGGAA 600
|.||.||.|||||.|||||.||.||.|||||||||.|..|.|||.||||.
BL02357___dna 551 TCGGACGAATGAAAAAAATCGTCGAAGCTGAACAGTTAAAGGTGCAGGAC 600
BSNT_00039___ 601 GGATCGCTGGATATCATCGCGAGTGCTGCAGACGGAGGGATGAGGGATGC 650
|||.|..|.||.||||||||.|||||.||.|||||.||.|||||||||||
BL02357___dna 601 GGAGCCTTAGACATCATCGCCAGTGCCGCGGACGGCGGCATGAGGGATGC 650
BSNT_00039___ 651 CCTGAGCCTTCTTGATCAGGCCATATCATTCAGCGGCGATATCCTGAAAG 700
.||||||||.||.|||||||||.|||||||||||||.||....||||..|
BL02357___dna 651 GCTGAGCCTGCTCGATCAGGCCGTATCATTCAGCGGAGAAGAGCTGACGG 700
BSNT_00039___ 701 TCGAAGATGCGCTTTTAATTACGGGTGCTGTTTCTCAATTATATATCGGG 750
|.||.||||||||..|.||.||.||.||.||.||.||....|||||.||.
BL02357___dna 701 TGGATGATGCGCTGCTGATAACAGGCGCCGTGTCACAGCACTATATTGGA 750
BSNT_00039___ 751 AAGCTTG-CACAATCCCTGCATGATAAAAACGTTTCTGACGCACTGGAAA 799
|||||.| |.||| ||||.||.||.|||||.|||||.|..||..||||||
BL02357___dna 751 AAGCTCGCCTCAA-CCCTTCACGAAAAAAATGTTTCCGGTGCTTTGGAAA 799
BSNT_00039___ 800 CATTAAATGAATTGCTTCAGCAAGGAAAAGATCCAGCTAAGCTGATAGAA 849
||||.||.|||.|.||||||||.||.||||||||.||.||..|.||.||.
BL02357___dna 800 CATTGAACGAACTCCTTCAGCAGGGGAAAGATCCGGCAAAATTAATCGAG 849
BSNT_00039___ 850 GATATGATTTTCTATTTCAGGGACATGCTGCTGTACAAAACAGCCCCTGG 899
||||||||||||||.||||||||.|||||.||.||..||||.||.||.|.
BL02357___dna 850 GATATGATTTTCTACTTCAGGGATATGCTTCTTTATCAAACGGCGCCCGA 899
BSNT_00039___ 900 CTTAGAGGGAGTGCTTGAGAAAGTAAAAGTCGATGAAACGTTCCGGAAA- 948
.|||||.||.||.|||||.||.||.||.||.||.|||..||||| |||
BL02357___dna 900 TTTAGAAGGCGTTCTTGAAAAGGTGAAGGTGGACGAAGAGTTCC--AAAC 947
BSNT_00039___ 949 -CTA----AGTGAACAAATTCCGGC-TCAGGCCCTATATGAAATGATTGA 992
||| .| ||||||||.|| ||| |.|||.||.||||||||.||
BL02357___dna 948 CCTATCCCGG----CAAATTCCCGCATCA-GACCTTTACGAAATGATCGA 992
BSNT_00039___ 993 TATTCTGAACAAGAGCCATCAGGAAATGAAATGGACAAATCATCCGCGTA 1042
|||..|.||.||.|||||||||||||||||||||||.|||||||||||||
BL02357___dna 993 TATATTAAATAAAAGCCATCAGGAAATGAAATGGACGAATCATCCGCGTA 1042
BSNT_00039___ 1043 TCTTTTTCGAAGTGGCCGTTGTGAAGATTTGCCA--AACCTCACATCA-- 1088
||||.||.|||||.||.|||||||||.|.||||| .||| .|.|.||
BL02357___dna 1043 TCTTCTTTGAAGTTGCGGTTGTGAAGCTCTGCCAGGGACC-AAAAGCAGG 1091
BSNT_00039___ 1089 ---ATCTGCTGCTGATCTCCCGGAAGTGGATATGCTGATGAAAAAAATCC 1135
|||.||.||.|..|..|||||||||||.|..||..|.||.||..|.|
BL02357___dna 1092 GGCATCCGCGGCCGCCCAGCCGGAAGTGGACAATCTCGTCAACAAGGTTC 1141
BSNT_00039___ 1136 AGCAGCTCGAACAGGAAGTAGAGCGGCTCAAAACAACGGGCATAAAAGCA 1185
.||||||.||||||||..|.|||.||||.||||||...||..| |||
BL02357___dna 1142 GGCAGCTTGAACAGGAGATTGAGAGGCTTAAAACACAAGGTGT----GCA 1187
BSNT_00039___ 1186 G-------CTGCGGAAAGCCC-----GAAAAAAGAAGCGCCGCGTGTGCC 1223
| |||| .||| |...|||||||||.|.|||..||.
BL02357___dna 1188 GGTCTCTTCTGC-----TCCCGCCCAGGCTAAAGAAGCGTCCCGTCCGCA 1232
BSNT_00039___ 1224 AAAGGGCGGGAAATCCAATTACAAAGCGCCAGTAGGCAGAATTCATGAGA 1273
|||..||...|||..|...||.||||||||.||.|||.|.||||||||.|
BL02357___dna 1233 AAAAAGCATAAAAAGCGCGTATAAAGCGCCTGTCGGCCGCATTCATGAAA 1282
BSNT_00039___ 1274 TTTTGAAGGAAGCCACAAGACCGGATCTTGATCTGCTCAGAAA------- 1316
|.||.|||||.|||||||||||||||||.|| |||
BL02357___dna 1283 TATTAAAGGATGCCACAAGACCGGATCTCGA---------AAAATTAAAG 1323
BSNT_00039___ 1317 --CAGTTGGGG-CAAGCTT-CTTGCTCATCTCAAACAGCAAAACAAAGTA 1362
|.|.||||| ||| || |||||.||.||.||||||||.||.||||||
BL02357___dna 1324 GGCTGCTGGGGACAA--TTGCTTGCCCAGCTGAAACAGCAGAATAAAGTA 1371
BSNT_00039___ 1363 TCGCATGC--CGCTTTGCTGAATGACAGTGAACCTGTGGCTGCCGGATCG 1410
||.||||| |.|||| |.||||||||.|||||.|||||||| |||.
BL02357___dna 1372 TCACATGCGGCCCTTT--TAAATGACAGCGAACCGGTGGCTGC---ATCT 1416
BSNT_00039___ 1411 GC---GGCATTTGTTCTGAAATTCAAATATGAAATTCATTGTAAAATGGT 1457
.| .||||||||.||...|||||||||.||||||||.|||||||||||
BL02357___dna 1417 TCAAAAGCATTTGTCCTCGCATTCAAATACGAAATTCACTGTAAAATGGT 1466
BSNT_00039___ 1458 TGCTGAGGATAACAACGGAGTCCGGACTAATCTTGAGCAGATTTTAGAAT 1507
.|||||.||.||||||||||||.||||.|||||.||.||.|||||.||
BL02357___dna 1467 AGCTGAAGACAACAACGGAGTCAGGACGAATCTGGAACAAATTTTGGA-- 1514
BSNT_00039___ 1508 CG--ATGCTCGGAAAAAGAATGGATTTGATTGGCGTTCCAGAAGCACAAT 1555
|| ||||||||...|||.||.|||.|..||||||||||.|||||.||||
BL02357___dna 1515 CGGAATGCTCGGCGGAAGGATAGATATAGTTGGCGTTCCCGAAGCCCAAT 1564
BSNT_00039___ 1556 GGGGTAAAATAAGAGAAGAATTTTTAGAAGATCATCAGCAGGAAAA---T 1602
|||||||||||||||||||||||||..|.|||||.||||.||||.| |
BL02357___dna 1565 GGGGTAAAATAAGAGAAGAATTTTTGCAGGATCACCAGCCGGAAGATTCT 1614
BSNT_00039___ 1603 GAAGGATCAAATGAACCGGCTGAAGAAGACCCGCTTATTGCCGAAGCGAA 1652
|||| ||||.||||||...||||||||.|||||..|.||.|||||.||
BL02357___dna 1615 GAAG---CAAACGAACCGAAAGAAGAAGATCCGCTCGTAGCAGAAGCTAA 1661
BSNT_00039___ 1653 AAAGCTTGTT-GGAGCGGATTTAATTGAAATAAAAGACTAA 1692
|||.| |||| ||||||||..|.||||||||.|||||.|||
BL02357___dna 1662 AAAAC-TGTTCGGAGCGGAACTGATTGAAATTAAAGAATAA 1701
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