Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00036 and BL02356

See Amino acid alignment / Visit BSNT_00036 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:41
# Commandline: needle
#    -asequence dna-align/BSNT_00036___yaaJ.1.5803.seq
#    -bsequence dna-align/BL02356___yaaJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00036___yaaJ-BL02356___yaaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00036___yaaJ-BL02356___yaaJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00036___yaaJ
# 2: BL02356___yaaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 607
# Identity:     367/607 (60.5%)
# Similarity:   367/607 (60.5%)
# Gaps:         137/607 (22.6%)
# Score: 1353.5
# 
#
#=======================================

BSNT_00036___      0 --------------------------------------------------      0
                                                                       
BL02356___yaa      1 ATGAGAGCTGAATTGGACAATGCGATTGTCTCCTTTCAGATTTTATATTC     50

BSNT_00036___      0 --------------------------------------------------      0
                                                                       
BL02356___yaa     51 CTTTAACTATAAGTTAGCCTATTCAGTTTGGCGAAAAACATTGAAAGAGT    100

BSNT_00036___      1 --------ATGACACAAGATGAACTTTATATGAAAGAAGCAATTAAAGAA     42
                             |||||||||||.||..||||||||||||||||..|.||.|||
BL02356___yaa    101 GCATGCGGATGACACAAGACGAGTTTTATATGAAAGAAGCGGTCAATGAA    150

BSNT_00036___     43 GCGAAAAAGGCTGAAGAGAAAGGTGAAGTGCCAATAGGTGCGGTGCTTGT     92
                     ||||.|||.||.|||||.|||||.||||||||.||.|||||.||.||.||
BL02356___yaa    151 GCGAGAAAAGCCGAAGAAAAAGGCGAAGTGCCGATTGGTGCTGTACTCGT    200

BSNT_00036___     93 CGTTAATGATGAAATTATAGCGCGTGCACATAATTTAAGAGAGACTGAGC    142
                     ..|..|||..||||||||.||.||.||.||||||.|.||.||.||.||||
BL02356___yaa    201 TCTGGATGGGGAAATTATCGCCCGCGCCCATAATCTGAGGGAAACCGAGC    250

BSNT_00036___    143 AACGATCTATTGCCCATGCAGAAATGCTTGTAATTGATGAAGCAT---GT    189
                     ||.|.||..|||||||.||.||.|||||.||.|||||.||.||||   |.
BL02356___yaa    251 AAAGGTCGGTTGCCCACGCGGAGATGCTCGTCATTGAAGAGGCATGCCGG    300

BSNT_00036___    190 AAGGCACTCGGAACATGGCGGCTGGAAGGTGCGACTCTTTATGTGACGCT    239
                     |||   ||.||.||.|||||||||||..|.||...||||||.||.||.||
BL02356___yaa    301 AAG---CTGGGGACCTGGCGGCTGGAGAGAGCTGTTCTTTACGTTACCCT    347

BSNT_00036___    240 TGAGCCATGTCCAATGTGTGCTGGTGCCGTCGTACTTTCTCGAGTGGAAA    289
                     ||||||||||||.||||||||.||.||.|.|||.|||||..||.|.||.|
BL02356___yaa    348 TGAGCCATGTCCGATGTGTGCCGGAGCGGCCGTTCTTTCCAGAATCGACA    397

BSNT_00036___    290 AAGTGGTTTTTGGCGCATTTGATCCGAAAGGCGGCTGTTCAGGCACACTA    339
                     |||||||.||.||.||.|.|||||||||||||||||||.||||.||..|.
BL02356___yaa    398 AAGTGGTGTTCGGAGCGTCTGATCCGAAAGGCGGCTGTGCAGGGACTTTG    447

BSNT_00036___    340 ATGAACCTTCTTCAGGAGGAACGCTTTAATCATCAGGCTGAAGTGGTGAG    389
                     |||||.||.||.||||||||..|.||.|||||||||||||||||.|||||
BL02356___yaa    448 ATGAATCTCCTGCAGGAGGAGAGATTCAATCATCAGGCTGAAGTCGTGAG    497

BSNT_00036___    390 CGGTGTACTTGAGGAAGAATGCGGCGGAATGCTCAGTGCGTTTTTCAGAG    439
                     |||.|||.|.||.||||||||||||.|.|||||.||.|..|||||||||.
BL02356___yaa    498 CGGCGTAATGGAAGAAGAATGCGGCAGGATGCTGAGCGATTTTTTCAGAA    547

BSNT_00036___    440 AACT-------AAGAAAAAAGAAGAAAGCCGCCAGGAAA---AACTTGTC    479
                     |.||       ||.||.||||.|||||      ||.|||   |.|   |.
BL02356___yaa    548 AGCTCCGCGCGAAAAAGAAAGCAGAAA------AGCAAAGCGAGC---TG    588

BSNT_00036___    480 TGAATAG    486
                     |||    
BL02356___yaa    589 TGA----    591


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