Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01256 and BL02344
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_01256___yfmR.1.5803.seq
# -bsequence dna-align/BL02344___yfmR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01256___yfmR-BL02344___yfmR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01256___yfmR-BL02344___yfmR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01256___yfmR
# 2: BL02344___yfmR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1965
# Identity: 1443/1965 (73.4%)
# Similarity: 1443/1965 (73.4%)
# Gaps: 150/1965 ( 7.6%)
# Score: 5148.5
#
#
#=======================================
BSNT_01256___ 1 ATGAGCATATTAAAAGCGGAAAATCTTTATAAAACATACGGAGATAAAAC 50
||||||||.||.|||||||||..|.|.||||||||.||||||||.|||||
BL02344___yfm 1 ATGAGCATTTTTAAAGCGGAAGGTTTATATAAAACTTACGGAGACAAAAC 50
BSNT_01256___ 51 ATTATTTGACCATATCTCCTTTCATATTGAAGAGAATGAGAGAATCGGAT 100
|||||||||||||||.||.||.|||||||||||.||.||..|.|||||.|
BL02344___yfm 51 ATTATTTGACCATATATCGTTCCATATTGAAGAAAACGAACGGATCGGCT 100
BSNT_01256___ 101 TAATCGGGCCGAACGGAACTGGAAAATCAAC-GC-TGCTGAAAGTGATTG 148
|.|||||.|||||||||||.|||||| |.| || |||||||||||||.|
BL02344___yfm 101 TGATCGGACCGAACGGAACGGGAAAA--AGCAGCTTGCTGAAAGTGATCG 148
BSNT_01256___ 149 CCGGCTTGGAATCTATCGAAGAAGGAGAAATCACGAAATCCGGAAGCGTG 198
|||||...|||||.|.||||.|||||||.|||||.||..||||.|||.|.
BL02344___yfm 149 CCGGCCATGAATCGACCGAAAAAGGAGACATCACAAAGCCCGGCAGCCTC 198
BSNT_01256___ 199 CAGGTCGAATTTCTT-CATCAAGACCCGGAGCTGCCTG-CGG---GGCAA 243
||..||| |.|.||| .||||.||.||.||..|| | ||| || ||
BL02344___yfm 199 CATATCG-AGTACTTGGATCAGGATCCTGATTTG---GACGGTCCGG-AA 243
BSNT_01256___ 244 ACAGTGCTGGAGCATATCTATTCCGGTGAATCGGCTGTGATGAAAACCTT 293
||.|||||.|||||.||.|||||.||.||.| |.||||||| |
BL02344___yfm 244 ACCGTGCTTGAGCACATTTATTCGGGAGATT---CCGTGATGA------T 284
BSNT_01256___ 294 GCG-----TGA----ATATGAAAAAGCGCTGTATGAACTGGGGAAA---- 330
||| ||| .|||||..|.|||||..|.||.||| ||
BL02344___yfm 285 GCGGACGATGAGGACGTATGAGCAGGCGCTTCAGGAGCTG----AATGCG 330
BSNT_01256___ 331 ---------GATCCCGAAAATGAA-CAGCGCCAGAAACACCTGCTGGCAG 370
||| ||||| ||| ||| |||| ||||||||||.|
BL02344___yfm 331 GCGCCTGATGAT-CCGAA---GAAGCAG-----GAAA-ACCTGCTGGCGG 370
BSNT_01256___ 371 CACAAGCGAAAATGGACGCAAACAAT---GCATGGGATGCAAACACCTTG 417
|.||.|.||||||||||| ||| || ||.|||||.||.||.||...|
BL02344___yfm 371 CGCAGGGGAAAATGGACG--AAC-ATGGCGCCTGGGACGCGAATACGGCG 417
BSNT_01256___ 418 GCAAAAACCGTATTGTCTAAGCTGGGCGTCAACGACGTAACAAAACCGGT 467
||||||||..|||||.|.|||||.||||||...||.||..|||||
BL02344___yfm 418 GCAAAAACGATATTGACGAAGCTTGGCGTCGCGGATGTGGCAAAA----- 462
BSNT_01256___ 468 CAA-TGAGCTC----TCAGGCGGCCAGAAAAAACGGGTGGCCATTGCCAA 512
.|| ||||||| ||.||.||.||.|||||.||.||.||.|||||.||
BL02344___yfm 463 GAAGTGAGCTCCCTTTCCGGGGGGCAAAAAAAGCGTGTTGCGATTGCGAA 512
BSNT_01256___ 513 AAACTTAATTCAGCCTGCTGATCTGCTCATTTTGGACGAGCCGACAAACC 562
||..|||||||||||.|||||.||.|||||||||||.|||||||||||||
BL02344___yfm 513 AACATTAATTCAGCCCGCTGACCTCCTCATTTTGGATGAGCCGACAAACC 562
BSNT_01256___ 563 ATTTGGATAATGAAACGATTGAGTGGCTTGAAGGGTATTTAAGCCAATAT 612
|..|.||.|||||||||||.||.|||||||||||.|||||.|||...|||
BL02344___yfm 563 ACCTTGACAATGAAACGATCGAATGGCTTGAAGGCTATTTGAGCGGGTAT 612
BSNT_01256___ 613 CCCGGCGCCGTCATGCTGGTGACGCACGATAGATATTTCTTAAACCGTGT 662
||.|||.|||||.|.||.||.||.||.||..|.|||||.||||||||.||
BL02344___yfm 613 CCGGGCTCCGTCGTCCTCGTCACCCATGACCGCTATTTTTTAAACCGGGT 662
BSNT_01256___ 663 CACCAACCGCATTTATGAGCTTGAAAGAGGCAGCCTCTACACGTACAAAG 712
.||||||.|.||.|||||.||.||..||||..||||.|||||.|||||||
BL02344___yfm 663 GACCAACAGGATCTATGAACTGGATCGAGGGCGCCTATACACATACAAAG 712
BSNT_01256___ 713 GCAACTATGAAGTGTTTTTAGAAAAACGTGCGGAACGGGAAGCGCAGGCT 762
|.|||||.|||||||||||.|||||.||.||.|||.|.|||||||..||.
BL02344___yfm 713 GGAACTACGAAGTGTTTTTGGAAAAGCGGGCCGAAAGAGAAGCGCTCGCC 762
BSNT_01256___ 763 GAGCAAAAGGAGACGAAGCGGCAAAACCTGCTGCGCCGCGAGCTGGCCTG 812
||.|||||.||.|||||||||||||||||.||..|..|.|||||.||.||
BL02344___yfm 763 GAACAAAACGAAACGAAGCGGCAAAACCTTCTCAGAAGGGAGCTTGCTTG 812
BSNT_01256___ 813 GCTCAGACGAGGAGCGAAAGCCCGCTCAACAAAACAAAAGGCGAGAATTG 862
|||.|||.|.||.||.||||||||.||.|||||.|||||.||.||||||.
BL02344___yfm 813 GCTGAGAAGGGGGGCCAAAGCCCGTTCGACAAAGCAAAAAGCAAGAATTC 862
BSNT_01256___ 863 ACCGGGTAGAGACGCTTAAAGAGCAGAAAGGCCCTCAGTCATCAGG---T 909
|.|||||.|||...||.||.||||||.|.|..|||.| |.|.|| |
BL02344___yfm 863 AGCGGGTGGAGGAACTAAAGGAGCAGGACGCGCCTGA---AACCGGTTCT 909
BSNT_01256___ 910 TCACTCGATTTTGCCATTGGCTCGCACCGTCTCGGAAAACAGGTTATTGA 959
||.||.|||||.||.||.|||||.|||||||||||.||.|||||.|||||
BL02344___yfm 910 TCCCTTGATTTCGCGATCGGCTCCCACCGTCTCGGCAAGCAGGTGATTGA 959
BSNT_01256___ 960 AGCGGAGAACGTCATGATCGCTTATGA---CGGCCGC-------AT--GC 997
||||||...||| ||| |.||||| || ||
BL02344___yfm 960 AGCGGAAGGCGT------------TGACATCAGCCGCGGCGGGAATCAGC 997
BSNT_01256___ 998 TCGTCGACCGT---TTTAATGAACTTGTCATACCAGGTGAACGGATCGGG 1044
|.|| |||| ||.||||||||..|..|.||.||.||.||||||||.
BL02344___yfm 998 TTGT---CCGTTCATTCAATGAACTGATTGTGCCGGGGGACCGGATCGGC 1044
BSNT_01256___ 1045 ATCATCGGGCCGAACGGCATCGGGAAAACAACGCTGTTAAATGCCCTTGC 1094
||||||||.||||||||.|||||.||||||||.||.|||||.||.|||||
BL02344___yfm 1045 ATCATCGGACCGAACGGGATCGGCAAAACAACACTCTTAAACGCGCTTGC 1094
BSNT_01256___ 1095 CGGCCGTCA-TACGCCGGACGGAGGCGATATTACGATCGGACAGACGGTC 1143
|||.|| || ||.|||.||||||||..|.||.||||||||.|||||.||.
BL02344___yfm 1095 CGGGCG-CATTAAGCCTGACGGAGGACAGATCACGATCGGCCAGACCGTA 1143
BSNT_01256___ 1144 AGAATCGGCTACTATACTCAGGATCATAGTGAAATGAACGGTGAGTTAAA 1193
|||||||||||.|||||.||||||||.||.||||||||||.||.|.|..|
BL02344___yfm 1144 AGAATCGGCTATTATACACAGGATCACAGCGAAATGAACGATGCGCTGCA 1193
BSNT_01256___ 1194 GGTCATTGACTATATAAAAGAAACGGCGGAGGTCGTAAAAACGGCAGATG 1243
||||.|.||.||.||.||.||.|||||.||||||||.||||||||.||.|
BL02344___yfm 1194 GGTCGTCGAATACATCAAGGAGACGGCTGAGGTCGTCAAAACGGCCGACG 1243
BSNT_01256___ 1244 GCGATATGATTACAGCTGAACAAATGCTCGAGCGTTTCCTCTTCCCGCGT 1293
|..|..||.|.|||||.||.||.|||||.||..|.||||||||.|||||.
BL02344___yfm 1244 GACAAGTGGTCACAGCGGAGCAGATGCTGGAAAGGTTCCTCTTTCCGCGG 1293
BSNT_01256___ 1294 TCAATGCAGCAGACGTATATCCGCAAGCTGTCCGGCGGGGAAAA---ACG 1340
....||||||..|..|..||||||||||||||.||||||||||| .||
BL02344___yfm 1294 AGCGTGCAGCGCAACTTGATCCGCAAGCTGTCAGGCGGGGAAAAGAGGCG 1343
BSNT_01256___ 1341 CCGTTTAT-ACTTGCTTCAGGTTCTCATGCAGGAGCCGAATGTCCTGTTT 1389
|| ||||| .|||| .|.||.||.|||.||||||||||.||||||||.
BL02344___yfm 1344 CC-TTTATCTCTTG---AAAGTGCTGATGGAGGAGCCGAACGTCCTGTTC 1389
BSNT_01256___ 1390 CTCGATGAGCCGACGAACGATTTGGATACTGAAACATTAAGCGTTCTTGA 1439
||||||||||||||.|||||..|.|||||.||.||..|..||||.||.||
BL02344___yfm 1390 CTCGATGAGCCGACAAACGACCTTGATACCGAGACGCTCGGCGTGCTCGA 1439
BSNT_01256___ 1440 GGATTATATTGACCAATTCCCTGGCGTCGTCATCACCGTATCCCATGACC 1489
.||||||.|.||.||.||.||.|||||.|||.|.||||||||||||||||
BL02344___yfm 1440 AGATTATTTGGAGCAGTTTCCCGGCGTTGTCGTGACCGTATCCCATGACC 1489
BSNT_01256___ 1490 GCTATTTCCTTGACCGCGTCGTCGACCGTTTGATTGTATTTGAAGGAAAT 1539
|||||||||||||||||||.||||||.|..||.||||||||||||| .
BL02344___yfm 1490 GCTATTTCCTTGACCGCGTAGTCGACAGGCTGCTTGTATTTGAAGG---C 1536
BSNT_01256___ 1540 GGCG---TCATTTCCCGCTTTCAAGGCTCCTATAGCGACTATATGGAGGA 1586
|||| .|.|.||.||.||||||||.|||||.|||||.|||||||||.|
BL02344___yfm 1537 GGCGGAAACGTATCGCGTTTTCAAGGTTCCTACAGCGAATATATGGAGAA 1586
BSNT_01256___ 1587 GTCAAAAGCGAAAAAAGCGGCCCAAAAACCGACAGCTGAGGAAAAAACGG 1636
| |||||| ||.||.|||.| .|||||.|||.|..||| ||.|.|
BL02344___yfm 1587 G-CAAAAG-GAGAACAGCCG-TCAAAAGCCGGCGTCTG------AAGCCG 1627
BSNT_01256___ 1637 CTGAA---GCCGAGCC---GAAGAAAAAACGGAAAAAGCTTTCTTACAAA 1680
|.||| |.|.|.|| |||.||.|||.||||.||.||.|||||.|||
BL02344___yfm 1628 CAGAACCTGTCAAACCTGAGAAAAAGAAAAGGAAGAAACTGTCTTATAAA 1677
BSNT_01256___ 1681 GACCAGCTGGAATGGGACGGCATCGAAGATAAAATTGCCCAGCTGGAAGA 1730
||.||||||||||||||||||||||||||.|.|||.|||...||||||||
BL02344___yfm 1678 GATCAGCTGGAATGGGACGGCATCGAAGACAGAATCGCCGCTCTGGAAGA 1727
BSNT_01256___ 1731 AAAGCATGAGCAGCTCGAAGCTGACATCGCCGCAGCAGGCAGTGATTTTG 1780
|||||||.|.|.|||.||||..||.||||||||.||.|||||.|||||||
BL02344___yfm 1728 AAAGCATAAACGGCTTGAAGAGGAAATCGCCGCCGCCGGCAGCGATTTTG 1777
BSNT_01256___ 1781 GCAAAATCCAAGAGC--TGATGGCCGAGCAGGCGAAAACTGCGGAAGAGC 1828
.|||||||| ||| | ||||||..|||||||||.||||.||.|||||||
BL02344___yfm 1778 CCAAAATCC-AGA-CATTGATGGAAGAGCAGGCGCAAACAGCCGAAGAGC 1825
BSNT_01256___ 1829 TTGAGGCTGCGATGGACCGCTGGACAGAATTGTCCCTCATGATCGAAGAA 1878
|.||.||.||.|||||.|||||||||||..||||.||..||||||||||.
BL02344___yfm 1826 TCGAAGCGGCAATGGAGCGCTGGACAGAGCTGTCGCTGTTGATCGAAGAG 1875
BSNT_01256___ 1879 CTGGA--AAGC-TAA 1890
||.|| ||.| |||
BL02344___yfm 1876 CTTGAACAATCGTAA 1890
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