Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01253 and BL02342
See
Amino acid alignment /
Visit
BSNT_01253 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_01253___yfmS.1.5803.seq
# -bsequence dna-align/BL02342___yfmS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01253___yfmS-BL02342___yfmS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01253___yfmS-BL02342___yfmS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01253___yfmS
# 2: BL02342___yfmS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 887
# Identity: 643/887 (72.5%)
# Similarity: 643/887 (72.5%)
# Gaps: 61/887 ( 6.9%)
# Score: 2235.5
#
#
#=======================================
BSNT_01253___ 1 ATGGAATTGACCA-TAAATACGGAAAAAGAAACCGCAGATATTCTGGACG 49
|| ||||..|.|| ||||.|||| |.|...|.|||| |.|||||.|
BL02342___yfm 1 AT-GAATGAAGCAGTAAAAACGG-ACATCCACCCGC-----TGCTGGATG 43
BSNT_01253___ 50 CATTTATCAAAGTAGC-CCCTTATTTAAACAGCCTGGTTCAGGATGATAT 98
|.|||.|.|||||.|| ||.||..|.||.||| |||.|||||||.|||.|
BL02342___yfm 44 CTTTTGTGAAAGTGGCGCCGTTCCTGAATCAG-CTGATTCAGGACGATGT 92
BSNT_01253___ 99 TACAATCGGCATTTATGATACGGAAAAACTGCTCGTGAATATACCGGCCA 148
.|||.|.||.|||||.|||||.|||||.|||.||||.||.||.||||..|
BL02342___yfm 93 GACAGTGGGGATTTACGATACCGAAAAGCTGATCGTCAACATCCCGGGAA 142
BSNT_01253___ 149 AAACCTTTTCGCTGAACGTAAAAGCCGGCGATCCGCTGCAGGAAGGGGAT 198
|.||.|||||.|||||.||.|||||.||.||.||..||||||||||.|||
BL02342___yfm 143 AGACATTTTCCCTGAATGTCAAAGCGGGTGACCCTTTGCAGGAAGGCGAT 192
BSNT_01253___ 199 ATCATCACAGATGCCATCCG---AAGCAATCAG-AAGAAGACGAGCATGG 244
||.||.|||||.|||||||| ||.|||..|| |||.| |||||||
BL02342___yfm 193 ATTATTACAGACGCCATCCGCCAAAACAAAAAGAAAGTA----AGCATGG 238
BSNT_01253___ 245 TTCCGAAAGAATTGTTCGGCTTCCCATTGATC-----GCGCGTGCCATCC 289
|.||.||.||..||||||||||||| || |||.|.||.||||
BL02342___yfm 239 TGCCTAAGGAGCTGTTCGGCTTCCC-----TCTTGCGGCGAGAGCGATCC 283
BSNT_01253___ 290 CGCTGCACGACGAGAATGGAAGAGTCATTGGAGGCGTCGGCCTCGGAACG 339
||||.|||||||||||.|||||.||.||.||.||.|||||.|||||.|||
BL02342___yfm 284 CGCTCCACGACGAGAACGGAAGGGTTATCGGCGGAGTCGGGCTCGGCACG 333
BSNT_01253___ 340 AGCCTTGAGGAGTCG--TCAAAGCTGCATGATGTCGCGGAAAGCTTATCA 387
||||||||..|.||| || ||||.||....||||||||||||.|.||.
BL02342___yfm 334 AGCCTTGAAAAATCGGATC--AGCTTCACCGCGTCGCGGAAAGCCTGTCG 381
BSNT_01253___ 388 GCTGTCGTTGAACAAACAGCCGCGGCTATTTCCGACATTTCTGAATCAAT 437
|...||||.||.||.||.||..||||.|||...||.||..|.|||||..|
BL02342___yfm 382 GTCATCGTCGAGCAGACGGCTTCGGCCATTCAGGATATCGCCGAATCTGT 431
BSNT_01253___ 438 TAACGGGTTTTCAACTCAAATGTCGGGCATTTCCTCTCAGGCGAAAAAAG 487
.|.|||.||.||....||||||||.|.|||.|||...||||||||..|||
BL02342___yfm 432 CAGCGGCTTCTCCGGACAAATGTCCGACATCTCCAAGCAGGCGAAGGAAG 481
BSNT_01253___ 488 TAAGCGAAAGCGCCGGTGAAATCGCCGATATTTCAGTAACTGTTAAAGGC 537
|.||.|||||||||||.|||||||...|.||||||||.||.||.||||||
BL02342___yfm 482 TCAGTGAAAGCGCCGGAGAAATCGAGAAAATTTCAGTCACCGTAAAAGGC 531
BSNT_01253___ 538 ATCTCTGACCAAAGCAATCTGCTCGGCTTGAATGCCGCGATCGAAGCGGC 587
||.||.||.||||||||.||||||||..||||.||.|||||.||||||||
BL02342___yfm 532 ATTTCAGATCAAAGCAACCTGCTCGGGCTGAACGCGGCGATTGAAGCGGC 581
BSNT_01253___ 588 AAGAGCAGGGGAGTCCGGAAAAGGGTTCTCTGTCGTCGCAGATGAGATCA 637
.|||||.||.|||||.||||||||||||||.||||||||.||.||.|||.
BL02342___yfm 582 GAGAGCCGGAGAGTCAGGAAAAGGGTTCTCCGTCGTCGCCGACGAAATCC 631
BSNT_01253___ 638 GAAAGCTAGCGACGCATTCAAAAGAAAATGTCGGCCAAATTGACCAGATT 687
|.|||||.|||||.||.|||||||||||.||||||||.||||||||.||.
BL02342___yfm 632 GCAAGCTTGCGACACACTCAAAAGAAAACGTCGGCCAGATTGACCAAATC 681
BSNT_01253___ 688 ACGAAAAAAATCCACAGCCTGC-----TGAAAGGGCTGGAGGAATCCATT 732
|||||.||||||||| || |.||||..||.|||.|.||.||.
BL02342___yfm 682 ACGAAGAAAATCCAC-----GCGTTATTAAAAGACCTTGAGCATTCGATC 726
BSNT_01253___ 733 G-AGTCGATTAACCAGCATACAGA-CGGACAAGCCGCTGCCGTTGAACAA 780
| |||| ||.||..|.||||| || |||.||.|||||.|..|||||||||
BL02342___yfm 727 GAAGTC-ATCAATGAACATAC-GAGCGGCCAGGCCGCAGGTGTTGAACAA 774
BSNT_01253___ 781 ATTTCCGCCACGATGCAGGAGATTTCAG--GAAGCGCGCAGCATCTTGCA 828
|||||||||||||||||||||| |||| |.|.||||||..|.|||||.
BL02342___yfm 775 ATTTCCGCCACGATGCAGGAGA--TCAGCAGCAACGCGCAAAACCTTGCC 822
BSNT_01253___ 829 AAAATGGCTGAA----AAAGCGCTTGAGGAAGAGTAA 861
||.|||||.||| || .||||.||..||
BL02342___yfm 823 AAGATGGCGGAACACCAA----TTTGAAGACTAG--- 852
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.