Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02604 and BL02313
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:16
# Commandline: needle
# -asequence dna-align/BSNT_02604___plsX.1.5803.seq
# -bsequence dna-align/BL02313___plsX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02604___plsX-BL02313___plsX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02604___plsX-BL02313___plsX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02604___plsX
# 2: BL02313___plsX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1028
# Identity: 751/1028 (73.1%)
# Similarity: 751/1028 (73.1%)
# Gaps: 61/1028 ( 5.9%)
# Score: 2642.0
#
#
#=======================================
BSNT_02604___ 1 ATGAGAATAGCTGTAGATGCAATGGGAGGAGACCACGCTCCCAAAGCTGT 50
||||.|||.|||||||||||.||||||||||||.|.|||||||||||.||
BL02313___pls 1 ATGAAAATTGCTGTAGATGCCATGGGAGGAGACAATGCTCCCAAAGCGGT 50
BSNT_02604___ 51 TATTGACGGAGTTATAAAAGGTATAGAGGCATTTGATGATCTCCATATCA 100
||||||.||.||.||.||||...|.||.|..|||||.||.|||.|.||||
BL02313___pls 51 TATTGAAGGCGTGATGAAAGCGGTCGAAGATTTTGAAGACCTCGAGATCA 100
BSNT_02604___ 101 CACTTGTCGGTGAC-----AAAACAACGATAGAATCACATTTAAC--AAC 143
|.||..||||.||| |||| ||||...|.|||||||| |||
BL02313___pls 101 CGCTGATCGGCGACCGGGAAAAA-----ATAGCCGCCCATTTAACAGAAC 145
BSNT_02604___ 144 TACATCAGATCGCATCACGGTGCTGCACGCAGATGAAGTGATTGAGCCTA 193
|| |..||.|||||.||....|||||.||.|||||.||.||..|.|
BL02313___pls 146 -AC----GGGCGGATCACCGTCAAACACGCGGAAGAAGTCATCGAAGCGA 190
BSNT_02604___ 194 CGGATGAACCTGTCCGTGCCGTGCGAAGAAAAAAGAACTCATCTATGGTT 243
|.||.||.||.|||.|.|||||..|||||||.|||||.|||||.||||||
BL02313___pls 191 CAGACGAGCCAGTCAGAGCCGTCAGAAGAAAGAAGAATTCATCGATGGTT 240
BSNT_02604___ 244 CTTATGGCGCAGGAG--GTTGCGGAAAACAGAGCTGACGCCTGCATTTCA 291
||.||| ||.|||| ||.||.|||..|||.|||||.|||||||||||.
BL02313___pls 241 CTGATG--GCCGGAGAAGTCGCCGAAGGCAGGGCTGATGCCTGCATTTCC 288
BSNT_02604___ 292 GCAGGAAATACCGGTGCATTAATGACAGCCGGTCTCTTTATTGTCGGAAG 341
||.|||||.|||||.||..|.|||||.|||||.||||||||.|||||..|
BL02313___pls 289 GCCGGAAACACCGGAGCGCTTATGACGGCCGGGCTCTTTATCGTCGGCCG 338
BSNT_02604___ 342 AATTAAAGGAATTGACCGTCCGGCGCTTGCCCCGACACTTCCGACTGTTT 391
.|||.||||.|||||..|.||.|||.|.||.||||||.|.|||||.||.|
BL02313___pls 339 GATTGAAGGGATTGAAAGGCCTGCGTTGGCACCGACATTGCCGACCGTCT 388
BSNT_02604___ 392 CGGGAGACGGATTTCTTCTCCTTGATGTCGGCGCCAATGTCGATGCCAAA 441
|.||||||||.|||||.||.|||||||||||.||.|||||.||.|||||.
BL02313___pls 389 CCGGAGACGGCTTTCTCCTTCTTGATGTCGGAGCGAATGTGGACGCCAAG 438
BSNT_02604___ 442 CCGGAGCACCTCGTTCAATATGCCATCATGGGTTCTGTTTATTCTCAG-- 489
||.||.||.|||||||||||.|||||.|||||.|||||||| |..||
BL02313___pls 439 CCCGAACATCTCGTTCAATACGCCATTATGGGATCTGTTTA--CGGAGAA 486
BSNT_02604___ 490 CAAGTGCGCGGTGTCACTTCA----CCGAGAGTCGGACTTTTAAATGTCG 535
||.||||..||.|||| | |||.|..||||||||||.||.||||
BL02313___pls 487 CAGGTGCTGGGCGTCA----AAAATCCGCGCATCGGACTTTTGAACGTCG 532
BSNT_02604___ 536 GAACAGAAGATAAAAAAGGAAACGAACTGACGAAGCAGACGTTTCAAATT 585
||||.|||||||||||||||||.||.||..|.||||||||.|||||||..
BL02313___pls 533 GAACCGAAGATAAAAAAGGAAATGAGCTTGCCAAGCAGACCTTTCAAAAA 582
BSNT_02604___ 586 TTAAAAGAAACAGCAAACATCAATTTTATCGGAAACGTGGAAGCGCGAGA 635
||.||.|||||.| |..|.|||||.|||||.||.||||||||.||.||
BL02313___pls 583 TTGAAGGAAACCG---ATTTGAATTTCATCGGCAATGTGGAAGCCCGCGA 629
BSNT_02604___ 636 CCTTTTAGATGATGTGGCGGATGTTGTAGTAACAGACGGCTTTACCGGGA 685
..|..|.||.|..||.||.|||||..|.||.|||||||||||||||||.|
BL02313___pls 630 TATGCTGGACGGAGTCGCTGATGTCATCGTCACAGACGGCTTTACCGGTA 679
BSNT_02604___ 686 ATGTTACACTCAAAACGCTGGAAGGCTCTGCGTTGTCTATTTTTAAAATG 735
|.|||.|..|.||||||.|.||.|||.|.|||.||||.||||||||||||
BL02313___pls 680 ACGTTGCCTTGAAAACGGTCGAGGGCGCGGCGCTGTCCATTTTTAAAATG 729
BSNT_02604___ 736 ATGAGA--GACGTAATGACGTCTACTTTGACATCCAAGCTTGCAGCAGCT 783
.||||| |||| .||||.||.|..||.||..|.|||||.||.||..||
BL02313___pls 730 CTGAGAACGACG--CTGACTTCGAGCTTCACGGCGAAGCTCGCCGCTTCT 777
BSNT_02604___ 784 GTGCTGAAGCCAAAATTGAAAGAAATGAAAATGAATATGGAGTATTC-GA 832
|..||||||||.||..|||||||||||||||.|||.|||||.||.|| ||
BL02313___pls 778 GCACTGAAGCCGAAGCTGAAAGAAATGAAAACGAAAATGGATTACTCTGA 827
BSNT_02604___ 833 ATTATGGCGGAGCAAGTCTTTTTGGCTTAAAAGCGCCTGTGATCAAGGCG 882
| ||.||||||||..|..|.||.||||||||.|||||.||.|||||.|||
BL02313___pls 828 A-TACGGCGGAGCCGGATTGTTCGGCTTAAAGGCGCCCGTCATCAAAGCG 876
BSNT_02604___ 883 CACGGCTCTTCAGATTCAAATGC----TGTATTCCATGCGATTCGGCAAG 928
|||||.||.||.|| |..|.|| |.||| ||.|||||.||.||.|
BL02313___pls 877 CACGGATCATCTGA--CGGACGCGCCGTTTAT--CACGCGATCCGCCAGG 922
BSNT_02604___ 929 CAAGAGAGATGGTCAGCCAAAATGTGGCTGCGCTCATTCA-GGAAGAAGT 977
|.|||||||||||||||||||||||.||.| ||||.| .||||||
BL02313___pls 923 CCAGAGAGATGGTCAGCCAAAATGTCGCGG----CATTTATCGAAGAA-- 966
BSNT_02604___ 978 GAAA---GAAGAAAAAACAGATGAGTAG 1002
||| .||.|||||.|||||||.|||
BL02313___pls 967 -AAAATTCAACAAAAAGCAGATGAATAG 993
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