Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02603 and BL02312

See Amino acid alignment / Visit BSNT_02603 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:16
# Commandline: needle
#    -asequence dna-align/BSNT_02603___ylpC.1.5803.seq
#    -bsequence dna-align/BL02312___fapR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02603___ylpC-BL02312___fapR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02603___ylpC-BL02312___fapR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02603___ylpC
# 2: BL02312___fapR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 572
# Identity:     447/572 (78.1%)
# Similarity:   447/572 (78.1%)
# Gaps:          10/572 ( 1.7%)
# Score: 1722.5
# 
#
#=======================================

BSNT_02603___      1 ATGAGAAGAAATAAGAGAGAACGCCAGGAATTACTTCAGCAGACGATTCA     50
                     |||||||.||.|||||||||||||||.|||||.||.|||||||||||||.
BL02312___fap      1 ATGAGAAAAAGTAAGAGAGAACGCCAAGAATTGCTGCAGCAGACGATTCG     50

BSNT_02603___     51 AGCAACCCCCTTTATTACAGATGAAGAATTAGCGGGTAAATTCGGGGTGA    100
                     ..|.|||||.||||||||.||.||.||.|||||||..|||||....||.|
BL02312___fap     51 TACGACCCCGTTTATTACGGACGAGGAGTTAGCGGAGAAATTTAACGTCA    100

BSNT_02603___    101 GCATCCAGACGATACGTTTGGACCGCTTAGAGCTTTCCATACCTGAACTG    150
                     ||||.||||||||.||.||||||||.||.||.||||||||||||||||||
BL02312___fap    101 GCATTCAGACGATTCGCTTGGACCGTTTGGAACTTTCCATACCTGAACTG    150

BSNT_02603___    151 AGAGAAAGAATTAAGAACGTGGCAGAGAAAACACTTGAGGACGAAGTGAA    200
                     |||||||||||.||.|..||.||.|||||..|.|||||.||.|||||.||
BL02312___fap    151 AGAGAAAGAATCAAAAGTGTTGCCGAGAAGTCTCTTGAAGATGAAGTCAA    200

BSNT_02603___    201 GTCTCTGTCACTTGATGAAGTTATCGGAGAAATTATTGACCTTGAGCTGG    250
                     |||..||.|.|||||.||.||.|||||.||.||.|||||..|.|||||||
BL02312___fap    201 GTCATTGCCGCTTGACGAGGTCATCGGCGAGATCATTGATTTGGAGCTGG    250

BSNT_02603___    251 ATGATCAGGCGATATCCATTTTAGAAATAAAACAGGAGCACGTGTTCAGC    300
                     ||||.||.|||||.||.|||.|.||.||.|.|..||||||.||.||||||
BL02312___fap    251 ATGAGCACGCGATTTCAATTCTTGAGATCAGAAGGGAGCATGTTTTCAGC    300

BSNT_02603___    301 CGGAATCAGATTGCGAGAGGACACCATTTATTTGCACAGGCGAATTCTTT    350
                     ||.|||||.||.||.||.||.||||||||.|||||.|||||.||.||..|
BL02312___fap    301 CGAAATCAAATCGCCAGGGGGCACCATTTGTTTGCCCAGGCCAACTCGCT    350

BSNT_02603___    351 GGCAGTTGCAGTCATTGATGACGAGCTGGCGCTGACTGCAAGTGCAGACA    400
                     .||.||.||..||||.||.||.|||||.||..||||.||.|..||.||||
BL02312___fap    351 CGCCGTCGCCCTCATCGACGATGAGCTCGCATTGACGGCCAAAGCGGACA    400

BSNT_02603___    401 TCCGCTTTACAAGACAGGTAAAGCAGGGTGAACGTGTCGTAGCAAAAGCG    450
                     |||||||||||||.|||||.|||||.||.|||||.|||||.|||||||||
BL02312___fap    401 TCCGCTTTACAAGGCAGGTCAAGCAAGGCGAACGGGTCGTTGCAAAAGCG    450

BSNT_02603___    451 AAAGTGACGGCTG----TCGAAAAAGAAAAAGGAAGAACGGTTGTCGAAG    496
                     |||||  ||  ||    |.||.|||||.|||||.|||||||||||.||||
BL02312___fap    451 AAAGT--CG--TGAAGCTTGATAAAGATAAAGGCAGAACGGTTGTTGAAG    496

BSNT_02603___    497 TGAACAGCTACGTTGGCGAAGAAATTGTTTTTTCTGGACG-CTTTGACAT    545
                     ||||||||||.||||.||||||...|||.|||||.|| || .||||.|||
BL02312___fap    497 TGAACAGCTATGTTGCCGAAGAGCCTGTGTTTTCAGG-CGAATTTGTCAT    545

BSNT_02603___    546 GTATCGTTCAAAACATTCATAA    567
                     |||||||||||||||.|||||.
BL02312___fap    546 GTATCGTTCAAAACAATCATAG    567


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.