Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02587 and BL02299
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_02587___yloM.1.5803.seq
# -bsequence dna-align/BL02299___rsmB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02587___yloM-BL02299___rsmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02587___yloM-BL02299___rsmB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02587___yloM
# 2: BL02299___rsmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1382
# Identity: 986/1382 (71.3%)
# Similarity: 986/1382 (71.3%)
# Gaps: 73/1382 ( 5.3%)
# Score: 3386.0
#
#
#=======================================
BSNT_02587___ 1 ATGAAAAAAACTAGTGTTCGTGACATCGCCCTTGAGGCGCTGATCAAATT 50
|||||||| ||.|||..|.||..||||.|||||.||.|||||.||..|
BL02299___rsm 1 ATGAAAAA---TAATGTGAGAGAAGTCGCGCTTGATGCACTGATTAAGCT 47
BSNT_02587___ 51 AGAACAAAACCAGGCATACAGCAACCTGCTGCTGAAATCGGTCATTAAAT 100
.||.||.||.||||||||||||||.||..||||..|.||.|.|||.|||.
BL02299___rsm 48 TGACCAGAATCAGGCATACAGCAATCTTTTGCTTCAGTCTGCCATGAAAG 97
BSNT_02587___ 101 CAAATGAACTGAGTGATCAGGACAGAGGGCTTTTGACTGAACTTGTCTAT 150
|.||.||..|.||.||..|.||||||||.||||||||.|||||.||.||.
BL02299___rsm 98 CGAACGATTTAAGCGACAAAGACAGAGGCCTTTTGACAGAACTCGTTTAC 147
BSNT_02587___ 151 GGTACATTACAAAATAAGATCGCGCTTGATTATATGCTTAAACCGTTTAT 200
||.||..|.||.||||||.|.|||||||||||||||||.||.||||||||
BL02299___rsm 148 GGCACCCTTCAGAATAAGCTGGCGCTTGATTATATGCTGAAGCCGTTTAT 197
BSNT_02587___ 201 CAATAAGCCTCAAAAGGT-AAAGCCGTGGGTGATTCAGCTTCT------- 242
.||.|||||..||||||| ||||.| |||||.||.||.||..|
BL02299___rsm 198 TAAAAAGCCGGAAAAGGTGAAAGAC-TGGGTCATCCATCTGTTGAGAATG 246
BSNT_02587___ 243 TCGCCTATCCTTATATCAAATGGAGTATTTAGAGAAGATTCCAGACAGGG 292
|||| |.|||||.|||||.||..|.|||||.||.||.|||.|||
BL02299___rsm 247 TCGC-------TGTATCAGATGGAATACCTGGAGAAAATCCCTGACCGGG 289
BSNT_02587___ 293 CAGCCATTCATGAAGCGGTTGAGATTGCTAAAATCCGCGGACACAAAGGC 342
|.||..||..||||||.|||||.||.|||||||..|||||.||.|||||.
BL02299___rsm 290 CCGCTCTTTTTGAAGCCGTTGAAATCGCTAAAAGACGCGGGCATAAAGGA 339
BSNT_02587___ 343 ATTGCTTCATTTGTCAACGGCGTGCTCCGTTCTATTCAGCGCGAAGGTGT 392
||..||||||||||.|||||.||.||.||.||..|||||.|.|||||.||
BL02299___rsm 340 ATATCTTCATTTGTTAACGGTGTTCTGCGCTCCGTTCAGAGGGAAGGAGT 389
BSNT_02587___ 393 TCCATCCTTTGACGCGATCGAAGATCC---TGTACGCCGGCTGGCGACAG 439
.||.|||||||..|..||.|..||||| ||.|||| ||.|||...|
BL02299___rsm 390 GCCTTCCTTTGCGGATATTGCCGATCCGATTGAACGC---CTTGCGGTTG 436
BSNT_02587___ 440 AAACAAGCCATCCGGAGTGGCTTGTGAAAGAGTGGGCGGATGCGTATGGA 489
|.|||||||||||||||||||||||.|.|||.|||.|||||||.||.||.
BL02299___rsm 437 AGACAAGCCATCCGGAGTGGCTTGTCAGAGAATGGACGGATGCCTACGGG 486
BSNT_02587___ 490 TTTGAAGCTGCGGAAAAGATTTGCCGCATCCATCTCATTCCGCCGAAGCA 539
||.|||||.||.|||.|.||.|||||.||.|||.|.||.|||||||||||
BL02299___rsm 487 TTCGAAGCGGCAGAACAAATCTGCCGGATTCATATGATCCCGCCGAAGCA 536
BSNT_02587___ 540 GACGCTGCGTGTCAATCA-AATGAAAGCAGACAGAGCTGAGCTGCTTGAC 588
||||.|.||.||||| || ..|||||...|||.|.|.|..|||.|||..|
BL02299___rsm 537 GACGATCCGCGTCAA-CAGGCTGAAAAACGACCGGGATACGCTTCTTTCC 585
BSNT_02587___ 589 CAAATGGCTG-CTGA---GGGAATCGAAGTTGAAAAAGGCGACCTCGCTG 634
| |.||| .||| |||.||.||.|..|||.||||||||.|..|..
BL02299___rsm 586 C----GTCTGAATGAAGCGGGGATTGAGGCGGAAGAAGGCGACTTGTCCA 631
BSNT_02587___ 635 AAGATGCTGTGAAGCT-CTTAAAGGGAACAATTGCCGGAACTCATTTCTT 683
||||.|||||.||.|| ||.||| |||||.|||||....||||.|||.||
BL02299___rsm 632 AAGACGCTGTCAAACTGCTGAAA-GGAACGATTGCGTCCACTCCTTTTTT 680
BSNT_02587___ 684 CCAAAACGGCGAAGTTTCCATCCAGGATGAGAGCTCCATGCTCGTCGCCC 733
|.||.|.||||||||..||||.||.|||||.|||||.|||||.||.||..
BL02299___rsm 681 CAAAGAAGGCGAAGTCACCATACAAGATGAAAGCTCAATGCTAGTAGCGA 730
BSNT_02587___ 734 GCGCCCTTGACCCTAAGCCTGATGAAACAGTGCTTGACGCGTGTGCGGCG 783
|.|||||||..|||.|||..|..|||||||||||.||.||.||.||.||.
BL02299___rsm 731 GAGCCCTTGGACCTGAGCGGGGAGAAACAGTGCTGGATGCATGCGCAGCT 780
BSNT_02587___ 784 CCTGGCGGAAAGTCGGCTCATATCGCAGAATTAATGC-AGAACA-AGGGG 831
||.||.|||||.||..|||||||||..|| |.||| .|||.| |.|||
BL02299___rsm 781 CCGGGAGGAAAATCCACTCATATCGGCGA---ACTGCTCGAAGATACGGG 827
BSNT_02587___ 832 AGCGTTACG--TCGCTTGATCTTCACAAACATAAAGTGAAGCTGATCAAA 879
|..|.| || ||.||.||.|||||..|.||||||||.||||||||||||
BL02299___rsm 828 AAAGGT-CGTCTCCCTGGACCTTCATCAGCATAAAGTAAAGCTGATCAAA 876
BSNT_02587___ 880 GAAGCGGCAGACCGGCTTGGCCTGACAATCATTCATGCGGAAACAA---- 925
||||||||||.||||.||||.||..|.|.|||| |||.|||
BL02299___rsm 877 GAAGCGGCAGGCCGGATTGGACTTTCCAACATT------GAAGCAAGAGC 920
BSNT_02587___ 926 --TGGATGCTAGAAAAGCGGGGGAAACGTTTGAAAACGAACAGTTTGACC 973
|||||||.||||||||.||.|||...||.|||...||||||||.||||
BL02299___rsm 921 GCTGGATGCCAGAAAAGCCGGAGAAGTCTTCGAACCGGAACAGTTCGACC 970
BSNT_02587___ 974 GAATATTGGTCGATGCCCCGTGCTCAGGTTTCGGTGTTATCAGAAGAAAG 1023
|.||..|.||||||||||||||.||.||.|||||.||.|||.|.|||||.
BL02299___rsm 971 GGATCCTCGTCGATGCCCCGTGTTCGGGATTCGGCGTCATCCGCAGAAAA 1020
BSNT_02587___ 1024 CCGGACATGAAATACACGAAAAAGCCTGACGACAGCGCCCGTCTAGCTGA 1073
|||||..|.|||||||..||||.|||.||.||||||||.|||||.||.|.
BL02299___rsm 1021 CCGGATCTCAAATACAGCAAAACGCCCGAAGACAGCGCGCGTCTCGCCGG 1070
BSNT_02587___ 1074 AATCCAGCTGTCGATCCTGAGGGAAATCGCACCATTAGTAAAAAAAGGTG 1123
.||.|||||..||||..|.|..|||||||||||.|||.|.||||.|||.|
BL02299___rsm 1071 GATTCAGCTTGCGATTTTAAACGAAATCGCACCTTTATTGAAAACAGGCG 1120
BSNT_02587___ 1124 GCACTCTTGTCTACAGTACGTGTACAATGGACCGGACAGAAAATGATGAA 1173
|.||..|.||.|||||.||.||.||||||||||.|||.||||||||..||
BL02299___rsm 1121 GGACATTGGTTTACAGCACATGCACAATGGACCCGACCGAAAATGAACAA 1170
BSNT_02587___ 1174 GTAATACATGCGTTTATACAAGAACATCCTGATTTTGA-----ACCCGAT 1218
||.||.|||||.|||.|..|||||||....||.||||| ||||.|
BL02299___rsm 1171 GTCATGCATGCTTTTTTGGAAGAACACGACGAATTTGAAGCGGACCCCA- 1219
BSNT_02587___ 1219 TTGTCTCTTGAAAAGCGGCTGCCTGAAAAGGTGAGACCCTTTGTTCGGGA 1268
|.||.|...||||||||||.|||||.|.|...||.|.|||...|||
BL02299___rsm 1220 ----CCCTCGCCGAGCGGCTGCCCGAAAAAGCGGCGCCGTATGTCAAGGA 1265
BSNT_02587___ 1269 TGGAAGGCTTCAGATCCTTCCTCATTATTTCGGAACAGATGGTTTCTTTA 1318
||||||..||||.||||||||.||.||.||.|||||.||.||.|||||||
BL02299___rsm 1266 TGGAAGCATTCAAATCCTTCCCCACTACTTTGGAACGGACGGCTTCTTTA 1315
BSNT_02587___ 1319 TTTGCAGCATGAGAAAGAAGGGATAA------ 1344
||||||||||||||||||||||||.|
BL02299___rsm 1316 TTTGCAGCATGAGAAAGAAGGGATCACAATAA 1347
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