Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02572 and BL02289
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_02572___ylnF.1.5803.seq
# -bsequence dna-align/BL02289___sirA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02572___ylnF-BL02289___sirA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02572___ylnF-BL02289___sirA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02572___ylnF
# 2: BL02289___sirA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 557
# Identity: 319/557 (57.3%)
# Similarity: 319/557 (57.3%)
# Gaps: 130/557 (23.3%)
# Score: 813.0
#
#
#=======================================
BSNT_02572___ 1 ATGCTTCCGCTGCACATTAGCCTGGAAAAGAAGAAG--GTTGTGATTGCG 48
|||||.|||||||||||||.|.|| ||||...||| |..||.||||||
BL02289___sir 1 ATGCTGCCGCTGCACATTAACATG--AAAGGCAAAGCCGCAGTCATTGCG 48
BSNT_02572___ 49 GG-GGGCGGCAGCAT-----CGCTCTCAGAAGGCTGAAATCGGTGATTTC 92
|| |||.||.|| || ||| |..||||||||.|||||.|..|
BL02289___sir 49 GGCGGGGGGAAG-ATTGCGGCGC-----GGCGGCTGAAAACGGTGCTGGC 92
BSNT_02572___ 93 TGAGGGAGCTGATATAACGC-----TCGTCAGTCCGGATGTTGAACCGGA 137
.||.||.|| || .||| ||.||||.||
BL02289___sir 93 AGAAGGTGC----AT-CCGCGACCGTCATCAGCCC--------------- 122
BSNT_02572___ 138 AATCAAGCAAATGGCAGAAGAG-----------------CGA----CGTA 166
|.||||| .|||||||| ||| .|.|
BL02289___sir 123 --TGAAGCA----TCAGAAGAGATGCTCGGATTGATTAACGAACACGGCA 166
BSNT_02572___ 167 TCAAATGGGAAAAACGGACAATTGAAAAA----GAA---GATTATCTC-- 207
||.|||||.|.|| |||||| ||| |.|.||.||
BL02289___sir 167 TCGAATGGAAGAA----------GAAAAAGGCGGAACCCGGTGATTTCAA 206
BSNT_02572___ 208 -AATGC-TTTCT--TCATTATTGCTGCGACGGAT---AATGCGGCAGTGA 250
||||| ||||| |||||.| ||||||.||| .|||.|||| |
BL02289___sir 207 GAATGCATTTCTGATCATTCT---TGCGACCGATGACCATGAGGCA---A 250
BSNT_02572___ 251 ACAAAGAAATTGCCCAATCCGCTTCGCCTTTTCAGCTTGTCAATTGTGTC 300
||||.....|.|||..|||.||..|.|||...|||||.||||||..||..
BL02289___sir 251 ACAAGCGTCTCGCCGCATCGGCAGCTCCTGAGCAGCTCGTCAATGTTGCG 300
BSNT_02572___ 301 AGTGACGCTGAGCTTGGCAATGTATATATGCCGAAAATTGTCAAAAGAGG 350
|||||.||.|||||.||.|||||||||.|.||.|||||..||||.|||||
BL02289___sir 301 AGTGAAGCGGAGCTGGGAAATGTATATGTTCCAAAAATAATCAACAGAGG 350
BSNT_02572___ 351 GCATGTCACTGTGTCTGTTTCTACAAGCGGAGCCAGTCCAAAGCACACGA 400
..|..|.||..|.||.||.||.||||.|||||||||.||....|||||||
BL02289___sir 351 AAACATAACCATATCCGTCTCAACAAACGGAGCCAGCCCGCGCCACACGA 400
BSNT_02572___ 401 -AAGAGCTTGCTGAAAACGTGGATAAGCTGATTGACGGCGATTTTATTGC 449
.|| |||.||.|.|.|..|.|||.|..||||.||.|..|| ||
BL02289___sir 401 TCAG-GCTGGCCGGACAGATCGATGATTTGATCGATGATGA-------GC 442
BSNT_02572___ 450 T----GAAGTGA---ACAGGCTTTATCAGGTGAGAAGGAAGA------AA 486
| .|||.|| ||..|||||..| ||.||.||||| ||
BL02289___sir 443 TCGTCCAAGAGATCGACGAGCTTTTCC----GAAAAAGAAGAGGCCTGAA 488
BSNT_02572___ 487 ----TAA 489
|.|
BL02289___sir 489 CCCTTGA 495
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